Rroxscaffold_6G00407500

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000430
Physical Location & Seq
Forward (+)
30140829 .. 30148047
7219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407500.1

Sequence Viewer

Length: 1767 bp
ATGACTCTTTTTCTATCTCACGAGGTCTATCTATTCGAAAAACGCTTCATGCCTTCATCCATGACAATGAGAGCGATGAAGAAGCAGAAAATTAAAACAACCAACACTGAGAGAGATGAAGAAGTAGAAGACGAAAGAGATGATGAGAAACCCTGCATGATTCTACAATTGCCAGACCACATAATCCTGGAGATCTTCTCTAGAATCCCAATAAACACGGTCATCCAATGCAAGTATGTGTGCAAGTCTTGGCGCCGTTCTCTCTCAGACCACGAGTTCTCAAAATCCCTATTTGCACGAACTGCGGCGTGCTTGTTTCTCAAAGTCTATAGTGAGACTCCATGCCGGAGCCGAAACACCAAACGTTATCATATACCCCCGAATAAGCACATCTTGGCCAACTTGGAAAGCGTCTCGAGCCCAAACAACGTGGTCTTGAAGCTTTCAGATCCCAATGCCTTATACAACAGGCTCCATTCAAGTTTTACCGGTGTTATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGACATAATTGTAAAATTGATGCTTTCATTTTTAACATATCCAATCCCATTACCGGTGAGTCTGTACCTCTTCCGGCCAATAAAGAAATAGGTCGTCCAGCTCACTTTGGGTTTGGGTTTAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACAGCCAATGACGTTAATGAACATCGCTTTCACAAAAGAAAACAATGTCATAAATTGGAGGTGATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAAGAATTGGCAAAGTATCAAATGTCATGCGTGCAGCACGAGAAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGCCACTGTAAAAAAGGAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGCCACTGTAAAAAAGGTTATGGCTCTCTCTTCGTACGTGCATTTGATGTTGAAAGCGAGCGTTTCAAGGATTTACCAATGCCCCCTTGTCATTTCCATCCCCATTCTATACCTCAAATGCGAGTCCTAGGAGGTTCACTTTCTGTAAGTGATGGCCGCACGTTTTGGGTAATGAAAGAGTACGGCGTCAAGAAGTCTTGGACCAAAGAGCTTGAAATTGGACGTGGTAAAGTTGATCCTAATGGCGGATATGGGTCCAATATACGAGATGTTGAAGTGCTGAAATTTACAGAGGGGAAAGTTTTGTTGTTAGCAGACAATAATTTGTGCCTCTATACTCCTGAAACCAGGATCCTTGTGAGGGTTGAAATTGATGGGATGCCATCAGGGGCTTCCATTTCGTGGCGGACCATATTCCGAGCTTTGTTTCTCCGAAGGATATTATCAAGGATTACGTCTCCAAAATTTTCTTATCAGCTATTGGAATTATTGGATTTTGATATGGGGAGGAAGGGGGTGAATTTGGGCGGTGAGAAAGGCTTTGGGTACAAGGGTTCTGCCTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGTGGTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

588

Amino Acids

66.64

Weight (kDa)

9.3

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 54 - 93 1.2e-08 F-box domain
F-box-like PF12937 54 - 98 2.7e-08 F-box-like
FBA_1 PF07734 148 - 383 7.1e-11 F-box associated beta propeller domain
FBA_3 PF08268 161 - 374 1.2e-18 F-box associated beta propeller domain
Pro_isomerase PF00160 484 - 583 2.3e-31 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 1308
AciI CCGC 6 cut(s) 305, 1063, 1152, 1312, 1434, 1746
AclI AACGTT 1 cut(s) 364
AclWI GGATC 6 cut(s) 443, 495, 508, 1136, 1252, 1265
AcoI YGGCCR 3 cut(s) 396, 603, 1060
AcsI RAATTY 3 cut(s) 1190, 1370, 1426
AcyI GRCGYC 3 cut(s) 253, 1092, 1616
AdeI CACNNNGTG 1 cut(s) 1642
AfaI GTAC 5 cut(s) 594, 942, 1088, 1454, 1611
AfiI CCNNNNNNNGG 4 cut(s) 581, 1151, 1267, 1308
AgeI ACCGGT 2 cut(s) 488, 581
AgsI TTSAA 8 cut(s) 439, 480, 959, 973, 1121, 1181, 1274, 1499
AjiI CACGTC 1 cut(s) 1130
AjnI CCWGG 3 cut(s) 186, 1253, 1543
AloI GAACNNNNNNTCC 2 cut(s) 1533, 1565
AluBI AGCT 6 cut(s) 442, 629, 1117, 1328, 1384, 1753
AluI AGCT 6 cut(s) 442, 629, 1117, 1328, 1384, 1753
Alw26I GTCTC 4 cut(s) 329, 418, 1368, 1691
AlwI GGATC 6 cut(s) 443, 495, 508, 1136, 1252, 1265
Ama87I CYCGRG 1 cut(s) 415
AoxI GGCC 4 cut(s) 396, 603, 1060, 1570
ApeKI GCWGC 1 cut(s) 812
ApoI RAATTY 3 cut(s) 1190, 1370, 1426
AsiGI ACCGGT 2 cut(s) 488, 581
AspA2I CCTAGG 1 cut(s) 1033
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 5 cut(s) 1107, 1161, 1314, 1541, 1571
AsuHPI GGTGA 5 cut(s) 596, 757, 1435, 1448, 1721
AsuII TTCGAA 1 cut(s) 36
AvaI CYCGRG 1 cut(s) 415
AvaII GGWCC 4 cut(s) 1107, 1161, 1314, 1541
AvrII CCTAGG 1 cut(s) 1033
BaeI ACNNNNGTAYC 2 cut(s) 1444, 1477
BalI TGGCCA 1 cut(s) 398
BamHI GGATCC 2 cut(s) 500, 1257
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 422
BauI CACGAG 3 cut(s) 20, 272, 816
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 824
BccI CCATC 6 cut(s) 742, 1011, 1052, 1274, 1297, 1479
BceAI ACGGC 2 cut(s) 240, 1105
BciT130I CCWGG 3 cut(s) 188, 1255, 1545
BclI TGATCA 1 cut(s) 1479
BcoDI GTCTC 4 cut(s) 329, 418, 1368, 1691
BfaI CTAG 2 cut(s) 201, 1034
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 256
BglII AGATCT 1 cut(s) 192
BisI GCNGC 3 cut(s) 306, 813, 1063
BlnI CCTAGG 1 cut(s) 1033
BlsI GCNGC 3 cut(s) 307, 814, 1064
Bme1390I CCNGG 3 cut(s) 188, 1255, 1545
Bme18I GGWCC 4 cut(s) 1107, 1161, 1314, 1541
BmeT110I CYCGRG 1 cut(s) 415
BmgBI CACGTC 1 cut(s) 1130
BmgT120I GGNCC 5 cut(s) 1107, 1161, 1314, 1541, 1571
BmiI GGNNCC 7 cut(s) 254, 350, 473, 502, 1162, 1259, 1573
BmrFI CCNGG 3 cut(s) 188, 1255, 1545
BmrI ACTGGG 2 cut(s) 859, 910
BmsI GCATC 2 cut(s) 538, 1275
BmuI ACTGGG 2 cut(s) 859, 910
BpiI GAAGAC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpmI CTGGAG 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 36
BsaAI YACGTR 1 cut(s) 944
BsaHI GRCGYC 3 cut(s) 253, 1092, 1616
BsaJI CCNNGG 2 cut(s) 1033, 1619
BsaWI WCCGGW 2 cut(s) 488, 581
Bsc4I CCNNNNNNNGG 4 cut(s) 581, 1151, 1267, 1308
Bse118I RCCGGY 2 cut(s) 488, 581
Bse1I ACTGG 4 cut(s) 854, 905, 1543, 1757
Bse3DI GCAATG 3 cut(s) 514, 1528, 1734
BseBI CCWGG 3 cut(s) 188, 1255, 1545
BseDI CCNNGG 2 cut(s) 1033, 1619
BseGI GGATG 4 cut(s) 56, 222, 1003, 1290
BseLI CCNNNNNNNGG 4 cut(s) 581, 1151, 1267, 1308
BseMI GCAATG 3 cut(s) 514, 1528, 1734
BseMII CTCAG 2 cut(s) 99, 279
BseNI ACTGG 4 cut(s) 854, 905, 1543, 1757
BseXI GCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 831
BshFI GGCC 4 cut(s) 398, 605, 1062, 1572
BshNI GGYRCC 1 cut(s) 252
BshTI ACCGGT 2 cut(s) 488, 581
BsiHKCI CYCGRG 1 cut(s) 415
BsiSI CCGG 4 cut(s) 346, 489, 582, 602
BsiWI CGTACG 1 cut(s) 940
BslFI GGGAC 2 cut(s) 636, 1520
BslI CCNNNNNNNGG 4 cut(s) 581, 1151, 1267, 1308
BsmAI GTCTC 4 cut(s) 329, 418, 1368, 1691
BsmBI CGTCTC 2 cut(s) 418, 1368
BsmFI GGGAC 2 cut(s) 636, 1520
BsnI GGCC 4 cut(s) 398, 605, 1062, 1572
BsoBI CYCGRG 1 cut(s) 415
Bsp119I TTCGAA 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
Bsp19I CCATGG 1 cut(s) 1619
BspACI CCGC 6 cut(s) 305, 1063, 1152, 1312, 1434, 1746
BspANI GGCC 4 cut(s) 398, 605, 1062, 1572
BspCNI CTCAG 2 cut(s) 100, 278
BspHI TCATGA 1 cut(s) 1491
BspLI GGNNCC 7 cut(s) 254, 350, 473, 502, 1162, 1259, 1573
BspPI GGATC 6 cut(s) 443, 495, 508, 1136, 1252, 1265
BspT104I TTCGAA 1 cut(s) 36
BspT107I GGYRCC 1 cut(s) 252
BsrDI GCAATG 3 cut(s) 514, 1528, 1734
BsrFI RCCGGY 2 cut(s) 488, 581
BsrI ACTGG 4 cut(s) 854, 905, 1543, 1757
BssAI RCCGGY 2 cut(s) 488, 581
BssECI CCNNGG 2 cut(s) 1033, 1619
BssMI GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
BssNI GRCGYC 3 cut(s) 253, 1092, 1616
BssSI CACGAG 3 cut(s) 20, 272, 816
BssT1I CCWWGG 2 cut(s) 1033, 1619
Bst2BI CACGAG 3 cut(s) 20, 272, 816
Bst2UI CCWGG 3 cut(s) 188, 1255, 1545
Bst4CI ACNGT 6 cut(s) 220, 760, 863, 914, 1609, 1715
Bst6I CTCTTC 2 cut(s) 603, 941
BstACI GRCGYC 3 cut(s) 253, 1092, 1616
BstAPI GCANNNNNTGC 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 36
BstC8I GCNNGC 4 cut(s) 310, 810, 965, 1570
BstDEI CTNAG 3 cut(s) 108, 265, 1553
BstDSI CCRYGG 1 cut(s) 1619
BstEII GGTNACC 1 cut(s) 1709
BstF5I GGATG 4 cut(s) 56, 222, 1003, 1290
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 7 cut(s) 195, 451, 503, 1144, 1260, 1482, 1686
BstMAI GTCTC 4 cut(s) 329, 418, 1368, 1691
BstMBI GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
BstMWI GCNNNNNNNGC 3 cut(s) 302, 417, 519
BstNI CCWGG 3 cut(s) 188, 1255, 1545
BstPI GGTNACC 1 cut(s) 1709
BstSCI CCNGG 3 cut(s) 186, 1253, 1543
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 824
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 4 cut(s) 192, 448, 500, 1257
BstYI RGATCY 4 cut(s) 192, 448, 500, 1257
BsuRI GGCC 4 cut(s) 398, 605, 1062, 1572
BtgI CCRYGG 1 cut(s) 1619
BtgZI GCGATG 2 cut(s) 89, 692
BtrI CACGTC 1 cut(s) 1130
BtsCI GGATG 4 cut(s) 56, 222, 1003, 1290
BtsIMutI CAGTG 5 cut(s) 105, 847, 859, 898, 910
Cac8I GCNNGC 4 cut(s) 310, 810, 965, 1570
CciI TCATGA 1 cut(s) 1491
CfoI GCGC 1 cut(s) 255
Cfr10I RCCGGY 2 cut(s) 488, 581
Cfr13I GGNCC 5 cut(s) 1107, 1161, 1314, 1541, 1571
CseI GACGC 3 cut(s) 400, 1081, 1624
Csp6I GTAC 5 cut(s) 593, 941, 1087, 1453, 1610
CspAI ACCGGT 2 cut(s) 488, 581
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 9 cut(s) 49, 61, 157, 342, 805, 1492, 1558, 1620, 1666
CviQI GTAC 5 cut(s) 593, 941, 1087, 1453, 1610
DdeI CTNAG 3 cut(s) 108, 265, 1553
DinI GGCGCC 1 cut(s) 254
DpnI GATC 7 cut(s) 194, 450, 502, 1143, 1259, 1481, 1685
DpnII GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
DraIII CACNNNGTG 1 cut(s) 1642
EaeI YGGCCR 3 cut(s) 396, 603, 1060
Eam1104I CTCTTC 2 cut(s) 603, 941
EarI CTCTTC 2 cut(s) 603, 941
EciI GGCGGA 2 cut(s) 1167, 1327
Eco130I CCWWGG 2 cut(s) 1033, 1619
Eco24I GRGCYC 1 cut(s) 422
Eco47I GGWCC 4 cut(s) 1107, 1161, 1314, 1541
Eco88I CYCGRG 1 cut(s) 415
Eco91I GGTNACC 1 cut(s) 1709
EcoO109I RGGNCCY 1 cut(s) 1571
EcoO65I GGTNACC 1 cut(s) 1709
EcoRII CCWGG 3 cut(s) 186, 1253, 1543
EcoT14I CCWWGG 2 cut(s) 1033, 1619
EcoT38I GRGCYC 1 cut(s) 422
EgeI GGCGCC 1 cut(s) 254
EheI GGCGCC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 1033, 1619
Esp3I CGTCTC 2 cut(s) 418, 1368
FaeI CATG 9 cut(s) 52, 64, 160, 345, 808, 1495, 1561, 1623, 1669
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 2 cut(s) 636, 1520
FatI CATG 9 cut(s) 48, 60, 156, 341, 804, 1491, 1557, 1619, 1665
FauNDI CATATG 1 cut(s) 1601
FbaI TGATCA 1 cut(s) 1479
Fnu4HI GCNGC 3 cut(s) 306, 813, 1063
FokI GGATG 4 cut(s) 43, 209, 990, 1297
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 3 cut(s) 306, 813, 1063
FspBI CTAG 2 cut(s) 201, 1034
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 306, 813, 1063
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 256
HaeIII GGCC 4 cut(s) 398, 605, 1062, 1572
HapII CCGG 4 cut(s) 346, 489, 582, 602
HgaI GACGC 3 cut(s) 400, 1081, 1624
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 3 cut(s) 253, 1092, 1616
Hin1II CATG 9 cut(s) 52, 64, 160, 345, 808, 1495, 1561, 1623, 1669
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 8 cut(s) 4, 160, 204, 337, 587, 1029, 1495, 1688
HpaII CCGG 4 cut(s) 346, 489, 582, 602
HphI GGTGA 5 cut(s) 596, 757, 1435, 1448, 1721
Hpy166II GTNNAC 2 cut(s) 684, 1043
Hpy188I TCNGA 5 cut(s) 268, 448, 530, 1325, 1340
Hpy188III TCNNGA 7 cut(s) 20, 201, 415, 436, 1096, 1247, 1492
Hpy8I GTNNAC 2 cut(s) 684, 1043
HpyAV CCTTC 7 cut(s) 63, 815, 1335, 1411, 1477, 1655, 1720
HpyCH4III ACNGT 6 cut(s) 220, 760, 863, 914, 1609, 1715
HpyCH4IV ACGT 8 cut(s) 364, 429, 696, 943, 1067, 1129, 1361, 1638
HpyCH4V TGCA 9 cut(s) 156, 231, 243, 296, 507, 812, 947, 1568, 1605
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 417, 519
HpyF3I CTNAG 3 cut(s) 108, 265, 1553
HpySE526I ACGT 8 cut(s) 364, 429, 696, 943, 1067, 1129, 1361, 1638
Hsp92I GRCGYC 3 cut(s) 253, 1092, 1616
Hsp92II CATG 9 cut(s) 52, 64, 160, 345, 808, 1495, 1561, 1623, 1669
HspAI GCGC 1 cut(s) 253
KasI GGCGCC 1 cut(s) 252
Ksp22I TGATCA 1 cut(s) 1479
Kzo9I GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
LmnI GCTCC 2 cut(s) 348, 477
Lsp1109I GCAGC 1 cut(s) 824
LweI GCATC 2 cut(s) 538, 1275
MaeI CTAG 2 cut(s) 201, 1034
MaeII ACGT 8 cut(s) 364, 429, 696, 943, 1067, 1129, 1361, 1638
MaeIII GTNAC 1 cut(s) 1709
MalI GATC 7 cut(s) 194, 450, 502, 1143, 1259, 1481, 1685
MboI GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
MfeI CAATTG 1 cut(s) 167
MflI RGATCY 4 cut(s) 192, 448, 500, 1257
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 398
Mly113I GGCGCC 1 cut(s) 253
MlyI GAGTC 4 cut(s) 331, 596, 1038, 1697
MmeI TCCRAC 1 cut(s) 553
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MseI TTAA 3 cut(s) 93, 561, 699
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 398
MspI CCGG 4 cut(s) 346, 489, 582, 602
MspR9I CCNGG 3 cut(s) 188, 1255, 1545
MunI CAATTG 1 cut(s) 167
MvaI CCWGG 3 cut(s) 188, 1255, 1545
MwoI GCNNNNNNNGC 3 cut(s) 302, 417, 519
NarI GGCGCC 1 cut(s) 253
NcoI CCATGG 1 cut(s) 1619
NdeI CATATG 1 cut(s) 1601
NdeII GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
NlaIII CATG 9 cut(s) 52, 64, 160, 345, 808, 1495, 1561, 1623, 1669
NlaIV GGNNCC 7 cut(s) 254, 350, 473, 502, 1162, 1259, 1573
NmuCI GTSAC 1 cut(s) 1709
NspV TTCGAA 1 cut(s) 36
PaeR7I CTCGAG 1 cut(s) 415
PagI TCATGA 1 cut(s) 1491
PfeI GAWTC 3 cut(s) 160, 204, 1495
Pfl23II CGTACG 1 cut(s) 940
PflMI CCANNNNNTGG 1 cut(s) 1308
PfoI TCCNGGA 1 cut(s) 186
PinAI ACCGGT 2 cut(s) 488, 581
PkrI GCNGC 3 cut(s) 307, 814, 1064
PleI GAGTC 4 cut(s) 331, 595, 1037, 1696
PluTI GGCGCC 1 cut(s) 256
PpsI GAGTC 4 cut(s) 331, 595, 1037, 1696
Ppu21I YACGTR 1 cut(s) 944
Psp1406I AACGTT 1 cut(s) 364
Psp6I CCWGG 3 cut(s) 186, 1253, 1543
PspEI GGTNACC 1 cut(s) 1709
PspGI CCWGG 3 cut(s) 186, 1253, 1543
PspLI CGTACG 1 cut(s) 940
PspN4I GGNNCC 7 cut(s) 254, 350, 473, 502, 1162, 1259, 1573
PspPI GGNCC 5 cut(s) 1107, 1161, 1314, 1541, 1571
PsuI RGATCY 4 cut(s) 192, 448, 500, 1257
RsaI GTAC 5 cut(s) 594, 942, 1088, 1454, 1611
RsaNI GTAC 5 cut(s) 593, 941, 1087, 1453, 1610
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 3 cut(s) 93, 561, 699
SatI GCNGC 3 cut(s) 306, 813, 1063
Sau3AI GATC 7 cut(s) 192, 448, 500, 1141, 1257, 1479, 1683
Sau96I GGNCC 5 cut(s) 1107, 1161, 1314, 1541, 1571
SchI GAGTC 4 cut(s) 331, 596, 1038, 1697
ScrFI CCNGG 3 cut(s) 188, 1255, 1545
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 2 cut(s) 538, 1275
SfcI CTRYAG 1 cut(s) 328
SfoI GGCGCC 1 cut(s) 254
Sfr274I CTCGAG 1 cut(s) 415
SfuI TTCGAA 1 cut(s) 36
SinI GGWCC 4 cut(s) 1107, 1161, 1314, 1541
SlaI CTCGAG 1 cut(s) 415
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
SsiI CCGC 6 cut(s) 305, 1063, 1152, 1312, 1434, 1746
SspDI GGCGCC 1 cut(s) 252
SspMI CTAG 2 cut(s) 201, 1034
StyD4I CCNGG 3 cut(s) 186, 1253, 1543
StyI CCWWGG 2 cut(s) 1033, 1619
TaaI ACNGT 6 cut(s) 220, 760, 863, 914, 1609, 1715
TaiI ACGT 8 cut(s) 367, 432, 699, 946, 1070, 1132, 1364, 1641
TaqI TCGA 4 cut(s) 36, 416, 1512, 1686
TatI WGTACW 1 cut(s) 1609
TauI GCSGC 2 cut(s) 308, 1065
TfiI GAWTC 3 cut(s) 160, 204, 1495
Tru1I TTAA 3 cut(s) 93, 561, 699
Tru9I TTAA 3 cut(s) 93, 561, 699
TscAI CASTG 5 cut(s) 112, 854, 866, 905, 917
TseFI GTSAC 1 cut(s) 1709
TseI GCWGC 1 cut(s) 812
Tsp45I GTSAC 1 cut(s) 1709
TspRI CASTG 5 cut(s) 112, 854, 866, 905, 917
Van91I CCANNNNNTGG 1 cut(s) 1308
VpaK11BI GGWCC 4 cut(s) 1107, 1161, 1314, 1541
XapI RAATTY 3 cut(s) 1190, 1370, 1426
XbaI TCTAGA 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 1033
XspI CTAG 2 cut(s) 201, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.