Prupe.1G169900_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13955427 .. 13956573
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G169900.1

Sequence Viewer

Length: 627 bp
ATGTTTTCCAACAAGAGCTCACTGAAGGCAAACTTTCCCGATCTTAATATTCCCTACATTCTGCAACTTCCACACCACATATTAGGGGAGATCTTCTGCAAAATTCAAATTAAAACCCTCGTCCAATGCAGGTTCGTGTGCAAGTTTTGGCATCGTTTGCTATCAGACCCCCAATTCACTGAACAACTGTTTTCACGAAGGACTTGCCTTCTTTTACGAACATTCGGCTCCGAGGTCCACTTGGCCACCCTCGAAAACGACTCCTCGAGCCCAAACGACGTCGCATGGAAGCTTTCGAACGATACAATTGTATTACCTACTCGTGACGCGTATATTAAAACGCCATGTAGCCATTTTTACATATCCAATCCCATCATGGGTGAATCTTTGGCTCCTCCAACACCGCCGGATGACTACATAATTAGTTTTCCATGTGGGTTTGGGTTTAGTCCCATAAGTGGTGCCTATAAGCTTGTTCGGTTCAGGTTTGGAGGTCGACTGGACCCGAACCCGGAGGTATTGGTTTTGACTATTGGCTCTGGGGCATGGAGAAGCATTGAGAATTTTAGGCTACAAGGAGAAAATGAGTATTTGGGTGATGAAGGAGTCTTGGAGCTTAGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

209

Amino Acids

23.57

Weight (kDa)

6.51

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 496
AccII CGCG 1 cut(s) 329
AciI CCGC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 2 cut(s) 102, 562
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 377, 458, 511
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 5 cut(s) 18, 292, 472, 616, 623
AluI AGCT 5 cut(s) 18, 292, 472, 616, 623
Alw21I GWGCWC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 243
ApoI RAATTY 2 cut(s) 102, 562
AspS9I GGNCC 2 cut(s) 235, 502
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 2 cut(s) 392, 608
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 235, 502
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BalI TGGCCA 1 cut(s) 245
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 2 cut(s) 20, 272
BauI CACGAG 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 20
BccI CCATC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BcnI CCSGG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 2 cut(s) 235, 502
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 235, 502
BmiI GGNNCC 4 cut(s) 229, 393, 463, 504
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 512
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 3 cut(s) 377, 458, 511
Bse1I ACTGG 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 3 cut(s) 377, 458, 511
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 2 cut(s) 253, 384
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 461
BsiHKAI GWGCWC 1 cut(s) 20
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 407, 512
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 3 cut(s) 377, 458, 511
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 265
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 20, 272
Bsp143I GATC 2 cut(s) 40, 90
BspACI CCGC 1 cut(s) 404
BspANI GGCC 1 cut(s) 245
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 4 cut(s) 229, 393, 463, 504
BspMI ACCTGC 1 cut(s) 120
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 2 cut(s) 40, 90
BssNI GRCGYC 1 cut(s) 279
BssSI CACGAG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 157
BstBI TTCGAA 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 329
BstKTI GATC 2 cut(s) 43, 93
BstMBI GATC 2 cut(s) 40, 90
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 510
BstUI CGCG 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 20, 177
BveI ACCTGC 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 235, 502
CseI GACGC 1 cut(s) 335
CviAII CATG 5 cut(s) 285, 345, 376, 432, 546
DdeI CTNAG 1 cut(s) 617
DpnI GATC 2 cut(s) 42, 92
DpnII GATC 2 cut(s) 40, 90
EaeI YGGCCR 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 2 cut(s) 20, 272
Eco47I GGWCC 2 cut(s) 235, 502
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 20, 272
FaeI CATG 5 cut(s) 288, 348, 379, 435, 549
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 435
FatI CATG 5 cut(s) 284, 344, 375, 431, 545
FblI GTMKAC 1 cut(s) 496
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 20, 272
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 407, 512
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 5 cut(s) 288, 348, 379, 435, 549
HincII GTYRAC 1 cut(s) 497
HindII GTYRAC 1 cut(s) 497
HindIII AAGCTT 2 cut(s) 290, 470
HinfI GANTC 3 cut(s) 260, 383, 606
HpaII CCGG 2 cut(s) 407, 512
HphI GGTGA 2 cut(s) 392, 608
Hpy166II GTNNAC 2 cut(s) 238, 497
Hpy188I TCNGA 2 cut(s) 166, 232
Hpy188III TCNNGA 3 cut(s) 38, 195, 323
Hpy8I GTNNAC 2 cut(s) 238, 497
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 4 cut(s) 19, 192, 218, 596
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 4 cut(s) 64, 99, 129, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 617
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 5 cut(s) 288, 348, 379, 435, 549
Kzo9I GATC 2 cut(s) 40, 90
LmnI GCTCC 3 cut(s) 233, 397, 613
LpnPI CCDG 6 cut(s) 115, 420, 469, 485, 525, 525
LweI GCATC 1 cut(s) 160
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 42, 92
MboI GATC 2 cut(s) 40, 90
MboII GAAGA 1 cut(s) 85
MfeI CAATTG 1 cut(s) 306
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 20, 272
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 6 cut(s) 102, 108, 173, 306, 420, 562
MluI ACGCGT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 2 cut(s) 254, 615
MmeI TCCRAC 2 cut(s) 33, 422
MnlI CCTC 7 cut(s) 128, 226, 260, 274, 405, 485, 508
Mox20I TGGCCA 1 cut(s) 245
MscI TGGCCA 1 cut(s) 245
MseI TTAA 4 cut(s) 45, 111, 336, 625
Msp20I TGGCCA 1 cut(s) 245
MspI CCGG 2 cut(s) 407, 512
MspR9I CCNGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 306
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 512
NdeII GATC 2 cut(s) 40, 90
NlaIII CATG 5 cut(s) 288, 348, 379, 435, 549
NlaIV GGNNCC 4 cut(s) 229, 393, 463, 504
NmuCI GTSAC 1 cut(s) 323
NspV TTCGAA 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 265
PfeI GAWTC 1 cut(s) 383
PleI GAGTC 2 cut(s) 254, 614
PpsI GAGTC 2 cut(s) 254, 614
Psp124BI GAGCTC 1 cut(s) 20
PspN4I GGNNCC 4 cut(s) 229, 393, 463, 504
PspPI GGNCC 2 cut(s) 235, 502
PspXI VCTCGAGB 1 cut(s) 265
PsuI RGATCY 1 cut(s) 90
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 495
SaqAI TTAA 4 cut(s) 45, 111, 336, 625
Sau3AI GATC 2 cut(s) 40, 90
Sau96I GGNCC 2 cut(s) 235, 502
SchI GAGTC 2 cut(s) 254, 615
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 2 cut(s) 20, 272
SfaNI GCATC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 265
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 2 cut(s) 235, 502
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 6 cut(s) 102, 108, 173, 306, 420, 562
SsiI CCGC 1 cut(s) 404
SspI AATATT 1 cut(s) 49
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 282
TaqI TCGA 4 cut(s) 252, 266, 296, 496
TasI AATT 6 cut(s) 102, 108, 173, 306, 420, 562
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 4 cut(s) 45, 111, 336, 625
Tru9I TTAA 4 cut(s) 45, 111, 336, 625
TscAI CASTG 2 cut(s) 27, 184
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 615
TspRI CASTG 2 cut(s) 27, 184
VpaK11BI GGWCC 2 cut(s) 235, 502
XapI RAATTY 2 cut(s) 102, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 496
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.