Prupe.1G169800_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13952766 .. 13953989
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G169800.1

Sequence Viewer

Length: 1188 bp
ATGACAAAAAGCATCTATGATGACAGTGGAGAAAACGAGAGAGTTTCATCCATGGAGAAACAAAAAAAGAATCATAATATTCCCTACATTCTGCAACTTCCAAGCCACATATTAGGGGAGATCTTCCGCAAAATTCAAATTAAAACCCTCCTGCAATGCAGGTTCGTGTGTAAGTTTTGGCATCGTTTGCTATCAGACCCCCAATTCACTGAACAACTGTTTTCGGGAACGACTTGTCTTCTTTTACGAGGATGCGGTTCCGACCATTTGGCCACCCTAAAAAACGACTCCTTGGGCCCAAACGACGTTGCACTGAAGCTTTTGAAAGATACGATTGTACTACCTAAAGAGGTGAATATTGTGAGTTCGTGCAACGGCTTACTCTGCTTCTACAAATTAGACTCTTGGAATCCGCCGTATGGCCGTTTATACATATCCAATCCCATCACGGGTGAGTCTTTGGCTCTTCCAACACCGCCAGATGAGAACGTAATTAGTTTTCCATGTGGGTTTGGGTTTAGTCCCATGAGTGGTGCCTATAAGCTTGTTCGGTTCAGGGGTACAAGTCAATGGCGTTATGAACCGTACCGGGAGGTGTTGGTTTTGACCGTTGGCTCTGGGGCTTGGAGAAGCATTGGGAATTTTTGGTACGATTTGGACTACATGCTATATGGGGTTTGTGTTAGTGGGTTTCTTCATTGGATTGATTGGTCAAGGGCTCTGATATGTGCCTTTGATCTTGAAAGAGAGGTTTTCCAAGAGTTGCCCCTACCCCCTAGTTGGGATTTGGAAGGACGGAATAATATATCAAGATTGGACTTTAGCGTCTTGCAGGGTTGCCTCTCTGTAACTGTAACTGTAGATTCCCAGAGAAAAATGAGTATTTGGGTGATGAAGGAGCATGGGGTTAAGGAGTCTTGGAGCCTAGAGCTTACAATTGGAGGCGTCATAGTTCCACGTCCTTGCCAGCAGTTTTTTCGGAATGGGCGAATCTCGTTGAAGTTTGGGGATGGGCCAGTCTTATTGAAGTTTGGGGATGGGCAAGTCTTGTTGTTTAATGGTGGGAAATTGCTGGCTCATGCTTCTGGGAAGGGTCTTGTGGACGTTGAGTTTGATGGGATATACTTGATTTCTGCACATGTCCATATTCCAAGCTTTGTTTCGCCTAAACATATTATCGGGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

396

Amino Acids

44.49

Weight (kDa)

7.96

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 533
AciI CCGC 4 cut(s) 127, 255, 413, 476
AcoI YGGCCR 2 cut(s) 270, 421
AcsI RAATTY 2 cut(s) 132, 640
AcuI CTGAAG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 945
AfaI GTAC 4 cut(s) 339, 562, 587, 650
AfiI CCNNNNNNNGG 5 cut(s) 419, 449, 530, 780, 781
AflIII ACRYGT 1 cut(s) 1138
AgsI TTSAA 5 cut(s) 137, 325, 743, 1000, 1027
AjiI CACGTC 1 cut(s) 959
AjuI GAANNNNNNNTTGG 2 cut(s) 1144, 1176
AluBI AGCT 4 cut(s) 319, 544, 931, 1155
AluI AGCT 4 cut(s) 319, 544, 931, 1155
AoxI GGCC 4 cut(s) 270, 295, 421, 1013
ApaI GGGCCC 1 cut(s) 299
ApoI RAATTY 2 cut(s) 132, 640
ArsI GACNNNNNNTTYG 2 cut(s) 1094, 1126
AspS9I GGNCC 3 cut(s) 295, 296, 1013
AsuC2I CCSGG 1 cut(s) 590
AsuHPI GGTGA 3 cut(s) 364, 464, 901
BaeGI GKGCMC 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 321, 354
BalI TGGCCA 1 cut(s) 272
BanI GGYRCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 299, 721
BbsI GAAGAC 1 cut(s) 230
BccI CCATC 4 cut(s) 452, 1004, 1031, 1109
BceAI ACGGC 3 cut(s) 391, 400, 408
BcgI CGANNNNNNTGC 2 cut(s) 959, 993
BcnI CCSGG 1 cut(s) 590
BfaI CTAG 2 cut(s) 777, 926
BfmI CTRYAG 1 cut(s) 858
BfuAI ACCTGC 1 cut(s) 150
BglII AGATCT 1 cut(s) 120
Bme1390I CCNGG 1 cut(s) 590
BmgBI CACGTC 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 295, 296, 1013
BmiI GGNNCC 4 cut(s) 259, 297, 535, 923
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 3 cut(s) 21, 190, 242
BpiI GAAGAC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 945
BsaJI CCNNGG 2 cut(s) 51, 291
Bsc4I CCNNNNNNNGG 5 cut(s) 419, 449, 530, 780, 781
Bse1I ACTGG 1 cut(s) 1016
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 2 cut(s) 51, 291
BseGI GGATG 4 cut(s) 47, 257, 1015, 1042
BseLI CCNNNNNNNGG 5 cut(s) 419, 449, 530, 780, 781
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 1016
BseSI GKGCMC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 1119
BshFI GGCC 4 cut(s) 272, 297, 423, 1015
BshNI GGYRCC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 589
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 5 cut(s) 419, 449, 530, 780, 781
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 4 cut(s) 272, 297, 423, 1015
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 721
Bsp143I GATC 2 cut(s) 120, 736
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 4 cut(s) 127, 255, 413, 476
BspANI GGCC 4 cut(s) 272, 297, 423, 1015
BspLI GGNNCC 4 cut(s) 259, 297, 535, 923
BspMI ACCTGC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 471
BspT107I GGYRCC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 1016
BssECI CCNNGG 2 cut(s) 51, 291
BssMI GATC 2 cut(s) 120, 736
BssNI GRCGYC 1 cut(s) 945
BssT1I CCWWGG 2 cut(s) 51, 291
Bst4CI ACNGT 6 cut(s) 26, 219, 585, 610, 853, 859
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 945
BstAPI GCANNNNNTGC 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 968, 1074
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 4 cut(s) 47, 257, 1015, 1042
BstKTI GATC 2 cut(s) 123, 739
BstMBI GATC 2 cut(s) 120, 736
BstMWI GCNNNNNNNGC 2 cut(s) 187, 384
BstNSI RCATGY 2 cut(s) 667, 1142
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 4 cut(s) 272, 297, 423, 1015
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 959
BtsCI GGATG 4 cut(s) 47, 257, 1015, 1042
BtsIMutI CAGTG 3 cut(s) 31, 207, 311
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 968, 1074
Cfr13I GGNCC 3 cut(s) 295, 296, 1013
CseI GACGC 2 cut(s) 814, 934
Csp6I GTAC 4 cut(s) 338, 561, 586, 649
CviAII CATG 7 cut(s) 52, 504, 526, 664, 902, 1079, 1139
CviQI GTAC 4 cut(s) 338, 561, 586, 649
DpnI GATC 2 cut(s) 122, 738
DpnII GATC 2 cut(s) 120, 736
DrdI GACNNNNNNGTC 1 cut(s) 824
DseDI GACNNNNNNGTC 1 cut(s) 824
EaeI YGGCCR 2 cut(s) 270, 421
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 51, 291
Eco24I GRGCYC 2 cut(s) 299, 721
Eco57I CTGAAG 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 51, 291
EcoT38I GRGCYC 2 cut(s) 299, 721
ErhI CCWWGG 2 cut(s) 51, 291
FaeI CATG 7 cut(s) 55, 507, 529, 667, 905, 1082, 1142
FaqI GGGAC 1 cut(s) 507
FatI CATG 7 cut(s) 51, 503, 525, 663, 901, 1078, 1138
FokI GGATG 4 cut(s) 34, 264, 1022, 1049
FriOI GRGCYC 2 cut(s) 299, 721
FspBI CTAG 2 cut(s) 777, 926
HaeIII GGCC 4 cut(s) 272, 297, 423, 1015
HapII CCGG 1 cut(s) 589
HgaI GACGC 2 cut(s) 814, 934
Hin1I GRCGYC 1 cut(s) 945
Hin1II CATG 7 cut(s) 55, 507, 529, 667, 905, 1082, 1142
HindIII AAGCTT 3 cut(s) 317, 542, 1153
HinfI GANTC 8 cut(s) 70, 287, 401, 409, 455, 863, 914, 990
HpaII CCGG 1 cut(s) 589
HphI GGTGA 3 cut(s) 364, 464, 901
Hpy166II GTNNAC 1 cut(s) 1102
Hpy188I TCNGA 4 cut(s) 196, 262, 723, 981
Hpy188III TCNNGA 3 cut(s) 225, 740, 810
Hpy8I GTNNAC 1 cut(s) 1102
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 785, 889, 1084
HpyCH4III ACNGT 6 cut(s) 26, 219, 585, 610, 853, 859
HpyCH4IV ACGT 4 cut(s) 306, 489, 958, 1104
HpyCH4V TGCA 7 cut(s) 94, 154, 159, 311, 372, 832, 1136
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 384
HpySE526I ACGT 4 cut(s) 306, 489, 958, 1104
Hsp92I GRCGYC 1 cut(s) 945
Hsp92II CATG 7 cut(s) 55, 507, 529, 667, 905, 1082, 1142
Kzo9I GATC 2 cut(s) 120, 736
LguI GCTCTTC 1 cut(s) 471
LmnI GCTCC 2 cut(s) 898, 921
LweI GCATC 3 cut(s) 21, 190, 242
MaeI CTAG 2 cut(s) 777, 926
MaeII ACGT 4 cut(s) 306, 489, 958, 1104
MaeIII GTNAC 2 cut(s) 847, 853
MalI GATC 2 cut(s) 122, 738
MboI GATC 2 cut(s) 120, 736
MboII GAAGA 4 cut(s) 115, 230, 458, 686
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 2 cut(s) 299, 721
MlsI TGGCCA 1 cut(s) 272
MluCI AATT 8 cut(s) 132, 138, 203, 395, 492, 640, 936, 1067
MluNI TGGCCA 1 cut(s) 272
MlyI GAGTC 4 cut(s) 281, 395, 464, 923
MmeI TCCRAC 2 cut(s) 285, 494
MnlI CCTC 7 cut(s) 158, 242, 343, 586, 742, 851, 935
Mox20I TGGCCA 1 cut(s) 272
MscI TGGCCA 1 cut(s) 272
MseI TTAA 3 cut(s) 141, 909, 1056
Msp20I TGGCCA 1 cut(s) 272
MspI CCGG 1 cut(s) 589
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 1 cut(s) 936
MwoI GCNNNNNNNGC 2 cut(s) 187, 384
NciI CCSGG 1 cut(s) 590
NcoI CCATGG 1 cut(s) 51
NdeII GATC 2 cut(s) 120, 736
NlaIII CATG 7 cut(s) 55, 507, 529, 667, 905, 1082, 1142
NlaIV GGNNCC 4 cut(s) 259, 297, 535, 923
NspI RCATGY 2 cut(s) 667, 1142
PciI ACATGT 1 cut(s) 1138
PciSI GCTCTTC 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 985
PfeI GAWTC 4 cut(s) 70, 409, 863, 990
PleI GAGTC 4 cut(s) 281, 395, 463, 922
PpsI GAGTC 4 cut(s) 281, 395, 463, 922
PscI ACATGT 1 cut(s) 1138
PspN4I GGNNCC 4 cut(s) 259, 297, 535, 923
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 3 cut(s) 295, 296, 1013
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 4 cut(s) 339, 562, 587, 650
RsaNI GTAC 4 cut(s) 338, 561, 586, 649
SapI GCTCTTC 1 cut(s) 471
SaqAI TTAA 3 cut(s) 141, 909, 1056
Sau3AI GATC 2 cut(s) 120, 736
Sau96I GGNCC 3 cut(s) 295, 296, 1013
SchI GAGTC 4 cut(s) 281, 395, 464, 923
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 2 cut(s) 299, 721
SfaNI GCATC 3 cut(s) 21, 190, 242
SfcI CTRYAG 1 cut(s) 858
Sse9I AATT 8 cut(s) 132, 138, 203, 395, 492, 640, 936, 1067
SsiI CCGC 4 cut(s) 127, 255, 413, 476
SspI AATATT 2 cut(s) 79, 358
SspMI CTAG 2 cut(s) 777, 926
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 2 cut(s) 51, 291
TaaI ACNGT 6 cut(s) 26, 219, 585, 610, 853, 859
TaiI ACGT 4 cut(s) 309, 492, 961, 1107
TasI AATT 8 cut(s) 132, 138, 203, 395, 492, 640, 936, 1067
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 4 cut(s) 70, 409, 863, 990
Tru1I TTAA 3 cut(s) 141, 909, 1056
Tru9I TTAA 3 cut(s) 141, 909, 1056
TscAI CASTG 3 cut(s) 31, 214, 318
TspDTI ATGAA 4 cut(s) 36, 594, 686, 908
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 3 cut(s) 31, 214, 318
XapI RAATTY 2 cut(s) 132, 640
XceI RCATGY 2 cut(s) 667, 1142
XspI CTAG 2 cut(s) 777, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.