Rh1CG398800

F-box protein At3g07870-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
66511543 .. 66512237
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG398800.1

Sequence Viewer

Length: 522 bp
ATGCCTCCTGCTTGTGAAACTACTGCTAAACTAGGAGTGTTAAATGGTTCACTTTCTATAAGTTGTTTCTCATTGGGTAATTTTAAAGTTTGGCTAATGAAGGAATATGGGGGCAAGAAGTTTTGGACCAGAAAGCTTGAAATTCATGACACAATTCAGGACCGCCGAATGACAATAGGGGATGACACATGTTGGGGGGGTCCTCTATCCAAGCATTATATTGAAGTTCTGAAACTTATAAAGGGGAAAAAGGCTCCGAAAAAAGCTTTACTGCTAGACAACTTTAGATTGAGCCTTTATACCCCTGCAACAAGGTCCCTTGTGAGGGTTCAAATTGATGGGATACCTTACATTGCTAGGAAGGCTATGGTAGGTGTCCATATTCCAAGCTTTGTTTCACCCAAAGAGATTATCAGGGATTACATCTCCAAGCATCCAGAGGAAGTAGCTGAAACATCTGATATAAAAATACCTGCATGGACAACTAGTGTTGCGGGATGGGGAAAGAACGATGAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

9.42

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 239
Acc36I ACCTGC 1 cut(s) 481
AciI CCGC 2 cut(s) 163, 494
AcsI RAATTY 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 324, 325
AflIII ACRYGT 1 cut(s) 188
AgsI TTSAA 3 cut(s) 140, 224, 332
AhlI ACTAGT 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AluBI AGCT 4 cut(s) 136, 266, 390, 449
AluI AGCT 4 cut(s) 136, 266, 390, 449
ApoI RAATTY 1 cut(s) 141
AspS9I GGNCC 4 cut(s) 126, 160, 200, 315
AsuHPI GGTGA 1 cut(s) 390
AvaII GGWCC 4 cut(s) 126, 160, 200, 315
BccI CCATC 2 cut(s) 332, 492
BciVI GTATCC 1 cut(s) 336
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 5 cut(s) 32, 275, 357, 486, 520
BfuAI ACCTGC 1 cut(s) 481
BfuI GTATCC 1 cut(s) 336
Bme18I GGWCC 4 cut(s) 126, 160, 200, 315
BmgT120I GGNCC 4 cut(s) 126, 160, 200, 315
BmiI GGNNCC 3 cut(s) 201, 255, 317
BmsI GCATC 1 cut(s) 442
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 325
Bse3DI GCAATG 1 cut(s) 351
BseGI GGATG 3 cut(s) 187, 433, 503
BseLI CCNNNNNNNGG 2 cut(s) 324, 325
BseMI GCAATG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 2 cut(s) 324, 325
BsmFI GGGAC 1 cut(s) 301
BspACI CCGC 2 cut(s) 163, 494
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 3 cut(s) 201, 255, 317
BspMI ACCTGC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 351
BstF5I GGATG 3 cut(s) 187, 433, 503
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 192
BsuI GTATCC 1 cut(s) 336
BtsCI GGATG 3 cut(s) 187, 433, 503
BveI ACCTGC 1 cut(s) 481
CciI TCATGA 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 126, 160, 200, 315
CviAII CATG 3 cut(s) 146, 189, 477
CviJI RGCY 8 cut(s) 94, 136, 254, 266, 294, 365, 390, 449
CviKI_1 RGCY 8 cut(s) 94, 136, 254, 266, 294, 365, 390, 449
DraI TTTAAA 1 cut(s) 85
Eco47I GGWCC 4 cut(s) 126, 160, 200, 315
EcoO109I RGGNCCY 2 cut(s) 200, 315
FaeI CATG 3 cut(s) 149, 192, 480
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 145, 188, 476
FauI CCCGC 1 cut(s) 487
FokI GGATG 3 cut(s) 194, 420, 510
FspBI CTAG 5 cut(s) 32, 275, 357, 486, 520
Hin1II CATG 3 cut(s) 149, 192, 480
HindIII AAGCTT 3 cut(s) 134, 264, 388
HphI GGTGA 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 3 cut(s) 231, 258, 460
Hpy188III TCNNGA 3 cut(s) 146, 158, 437
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 94, 355
HpyCH4V TGCA 2 cut(s) 308, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
Hsp92II CATG 3 cut(s) 149, 192, 480
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 21, 142, 143, 318, 400, 450, 486
LweI GCATC 1 cut(s) 442
MaeI CTAG 5 cut(s) 32, 275, 357, 486, 520
MluCI AATT 4 cut(s) 79, 141, 153, 333
MnlI CCTC 4 cut(s) 15, 213, 318, 433
MseI TTAA 2 cut(s) 41, 84
MwoI GCNNNNNNNGC 1 cut(s) 362
NlaIII CATG 3 cut(s) 149, 192, 480
NlaIV GGNNCC 3 cut(s) 201, 255, 317
NspI RCATGY 1 cut(s) 192
PagI TCATGA 1 cut(s) 145
PciI ACATGT 1 cut(s) 188
PpuMI RGGWCCY 2 cut(s) 200, 315
PscI ACATGT 1 cut(s) 188
PsiI TTATAA 1 cut(s) 239
Psp5II RGGWCCY 2 cut(s) 200, 315
PspN4I GGNNCC 3 cut(s) 201, 255, 317
PspPI GGNCC 4 cut(s) 126, 160, 200, 315
PspPPI RGGWCCY 2 cut(s) 200, 315
SaqAI TTAA 2 cut(s) 41, 84
Sau96I GGNCC 4 cut(s) 126, 160, 200, 315
SetI ASST 8 cut(s) 138, 268, 317, 349, 376, 392, 451, 475
SfaNI GCATC 1 cut(s) 442
SinI GGWCC 4 cut(s) 126, 160, 200, 315
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 4 cut(s) 79, 141, 153, 333
SsiI CCGC 2 cut(s) 163, 494
SspMI CTAG 5 cut(s) 32, 275, 357, 486, 520
TasI AATT 4 cut(s) 79, 141, 153, 333
Tru1I TTAA 2 cut(s) 41, 84
Tru9I TTAA 2 cut(s) 41, 84
TspDTI ATGAA 2 cut(s) 113, 134
VpaK11BI GGWCC 4 cut(s) 126, 160, 200, 315
XapI RAATTY 1 cut(s) 141
XceI RCATGY 1 cut(s) 192
XspI CTAG 5 cut(s) 32, 275, 357, 486, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.