RLG00000026910

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000430
Physical Location & Seq
Reverse (-)
6916674 .. 6917654
981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026910

Sequence Viewer

Length: 981 bp
ATGACGAAAACAAAACCAACCAGAACTGAGAGGAATACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCCAGGACGAGAAACCTTGCAACATTCTGCAATTGCCAGACCACATCACTCAGGAGATCTTCCTTCAAATCCCATTGAAATCTCTCATCCAATGCAAGTTTGTGTGCAAGTCTTGGCTCCGTTTTCTCTCTAACCCCGACTTCACAAAAATTCTAGTTTCACGAGCGCCTACTTGCCATTTTCTCCGAGACCTTGACACAGATCAGCACGTCTTGGCCGACCTGAGAAGCTCCTGGAGCCCATACAATATGGTCTTGAAGCTTTCTGACCCCAATGCCTTATACAATAGGGTCAATAGTTCCACTTCCACAGGTTGTTCACGTATTATAGGTTCCAGCAATGGCTTCCTCTGCTTATTCCGTCGTAATCGTAAAATTAAGGCTCTCCATTTTAATATATCGAATCCTTTTACAAGAGATTCTATAGCTCTTCCAAGCTTTAAAGCTAGGGATCATGAGCGACTTAGATTTGGGTTTGGGTTTAGTCCCATAAGTCATGTCTATAAGGTGGTGCTGTTTACAGTCTATGGAAAAAATTGGTTTCGAAATAAGTTGAAGGTGATGGTTTTGACAGTTGGCTCTGGGATTTGGAGAAGCATCGGAAAAGTATCTAAATTTGTCGGGAGTACCAGATATGGGGTCTTTCATAATGGATTTCTTCACTGGATTTGCCACTGTAAACGTTCTCCTTACTTTCCTTTCTTACGTGCCTTTGAATCAAAGGCTTTGATGTTGAAAGTGAGCGTTTCAAGAATTTACCAATATATGCCTCGTTCTGTCTACAAAACTACTGCTTACCTAGGAGTGTTAAATGGTTCACTTTCTATAAAGTTGTTGCTCATCCGATACTTTGGAAGTTTGGCTAATGAAGGAATATGGGGACAAGAAATTTTGGACGAAAGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

327

Amino Acids

37.75

Weight (kDa)

9.55

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 73 1.3e-08 F-box domain
F-box-like PF12937 33 - 70 1.5e-06 F-box-like
FBA_3 PF08268 123 - 251 6.8e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 852
AclI AACGTT 1 cut(s) 754
AclWI GGATC 1 cut(s) 531
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 4 cut(s) 222, 686, 825, 960
AfaI GTAC 1 cut(s) 700
AfiI CCNNNNNNNGG 1 cut(s) 708
AgsI TTSAA 7 cut(s) 140, 151, 331, 628, 788, 808, 822
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 2 cut(s) 75, 305
AluBI AGCT 6 cut(s) 303, 334, 500, 510, 518, 977
AluI AGCT 6 cut(s) 303, 334, 500, 510, 518, 977
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 531
AoxI GGCC 1 cut(s) 288
ApoI RAATTY 4 cut(s) 222, 686, 825, 960
AspA2I CCTAGG 1 cut(s) 871
AspLEI GCGC 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 643
AsuII TTCGAA 1 cut(s) 616
AvrII CCTAGG 1 cut(s) 871
BanII GRGCYC 1 cut(s) 314
BauI CACGAG 1 cut(s) 234
BccI CCATC 1 cut(s) 628
BciT130I CCWGG 2 cut(s) 77, 307
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 3 cut(s) 227, 519, 872
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 242
BglII AGATCT 1 cut(s) 129
BlnI CCTAGG 1 cut(s) 871
Bme1390I CCNGG 2 cut(s) 77, 307
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 191, 311, 406
BmrFI CCNGG 2 cut(s) 77, 307
BmsI GCATC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 328
Bpu14I TTCGAA 1 cut(s) 616
BsaAI YACGTR 2 cut(s) 395, 779
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 871
Bsc4I CCNNNNNNNGG 1 cut(s) 708
Bse1I ACTGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 2 cut(s) 77, 307
BseDI CCNNGG 1 cut(s) 871
BseGI GGATG 2 cut(s) 159, 912
BseLI CCNNNNNNNGG 1 cut(s) 708
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 3 cut(s) 18, 137, 287
BseNI ACTGG 1 cut(s) 740
BshFI GGCC 1 cut(s) 290
BslFI GGGAC 2 cut(s) 543, 966
BslI CCNNNNNNNGG 1 cut(s) 708
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 2 cut(s) 543, 966
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 3 cut(s) 129, 274, 523
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 3 cut(s) 19, 136, 288
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 191, 311, 406
BspPI GGATC 1 cut(s) 531
BspQI GCTCTTC 1 cut(s) 507
BspT104I TTCGAA 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 1 cut(s) 871
BssMI GATC 3 cut(s) 129, 274, 523
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 871
Bst2BI CACGAG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 77, 307
Bst4CI ACNGT 3 cut(s) 595, 646, 749
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 2 cut(s) 395, 779
BstBI TTCGAA 1 cut(s) 616
BstDEI CTNAG 4 cut(s) 27, 123, 296, 536
BstF5I GGATG 2 cut(s) 159, 912
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 132, 277, 526
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 3 cut(s) 129, 274, 523
BstMWI GCNNNNNNNGC 2 cut(s) 309, 423
BstNI CCWGG 2 cut(s) 77, 307
BstSCI CCNGG 2 cut(s) 75, 305
BstSFI CTRYAG 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 1 cut(s) 290
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 159, 912
BtsIMutI CAGTG 2 cut(s) 733, 745
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 241
Csp6I GTAC 1 cut(s) 699
CviAII CATG 2 cut(s) 527, 569
CviQI GTAC 1 cut(s) 699
DdeI CTNAG 4 cut(s) 27, 123, 296, 536
DpnI GATC 3 cut(s) 131, 276, 525
DpnII GATC 3 cut(s) 129, 274, 523
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 871
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 75, 305
EcoT14I CCWWGG 1 cut(s) 871
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 2 cut(s) 530, 572
FaqI GGGAC 2 cut(s) 543, 966
FatI CATG 2 cut(s) 526, 568
FblI GTMKAC 1 cut(s) 852
FokI GGATG 2 cut(s) 146, 899
FriOI GRGCYC 1 cut(s) 314
FspBI CTAG 3 cut(s) 227, 519, 872
GlaI GCGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 530, 572
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HindIII AAGCTT 2 cut(s) 332, 508
HinfI GANTC 3 cut(s) 475, 491, 788
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 5 cut(s) 392, 591, 752, 853, 890
Hpy188I TCNGA 4 cut(s) 260, 340, 674, 917
Hpy188III TCNNGA 6 cut(s) 125, 234, 328, 527, 694, 822
Hpy8I GTNNAC 5 cut(s) 392, 591, 752, 853, 890
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 3 cut(s) 146, 622, 935
HpyCH4III ACNGT 3 cut(s) 595, 646, 749
HpyCH4IV ACGT 4 cut(s) 282, 394, 754, 778
HpyCH4V TGCA 4 cut(s) 93, 103, 168, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 309, 423
HpyF3I CTNAG 4 cut(s) 27, 123, 296, 536
HpySE526I ACGT 4 cut(s) 282, 394, 754, 778
Hsp92II CATG 2 cut(s) 530, 572
HspAI GCGC 1 cut(s) 239
Kzo9I GATC 3 cut(s) 129, 274, 523
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 3 cut(s) 195, 308, 309
LweI GCATC 1 cut(s) 678
MaeI CTAG 3 cut(s) 227, 519, 872
MaeII ACGT 4 cut(s) 282, 394, 754, 778
MalI GATC 3 cut(s) 131, 276, 525
MboI GATC 3 cut(s) 129, 274, 523
MfeI CAATTG 1 cut(s) 104
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 7 cut(s) 104, 222, 447, 607, 686, 825, 960
MnlI CCTC 3 cut(s) 24, 431, 852
MseI TTAA 4 cut(s) 450, 465, 513, 881
MspR9I CCNGG 2 cut(s) 77, 307
MunI CAATTG 1 cut(s) 104
MvaI CCWGG 2 cut(s) 77, 307
MwoI GCNNNNNNNGC 2 cut(s) 309, 423
NdeII GATC 3 cut(s) 129, 274, 523
NlaIII CATG 2 cut(s) 530, 572
NlaIV GGNNCC 3 cut(s) 191, 311, 406
NspV TTCGAA 1 cut(s) 616
PagI TCATGA 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PfeI GAWTC 3 cut(s) 475, 491, 788
PfoI TCCNGGA 1 cut(s) 305
Ppu21I YACGTR 2 cut(s) 395, 779
Psp1406I AACGTT 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 75, 305
PspGI CCWGG 2 cut(s) 75, 305
PspN4I GGNNCC 3 cut(s) 191, 311, 406
PsrI GAACNNNNNNTAC 2 cut(s) 388, 420
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 700
RsaNI GTAC 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 450, 465, 513, 881
Sau3AI GATC 3 cut(s) 129, 274, 523
ScrFI CCNGG 2 cut(s) 77, 307
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 1 cut(s) 678
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 616
Sse9I AATT 7 cut(s) 104, 222, 447, 607, 686, 825, 960
SspMI CTAG 3 cut(s) 227, 519, 872
StyD4I CCNGG 2 cut(s) 75, 305
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 3 cut(s) 595, 646, 749
TaiI ACGT 4 cut(s) 285, 397, 757, 781
TaqI TCGA 2 cut(s) 473, 616
TasI AATT 7 cut(s) 104, 222, 447, 607, 686, 825, 960
TfiI GAWTC 3 cut(s) 475, 491, 788
Tru1I TTAA 4 cut(s) 450, 465, 513, 881
Tru9I TTAA 4 cut(s) 450, 465, 513, 881
TscAI CASTG 2 cut(s) 740, 752
TspDTI ATGAA 2 cut(s) 707, 954
TspGWI ACGGA 2 cut(s) 182, 422
TspRI CASTG 2 cut(s) 740, 752
XapI RAATTY 4 cut(s) 222, 686, 825, 960
XmaJI CCTAGG 1 cut(s) 871
XmiI GTMKAC 1 cut(s) 852
XspI CTAG 3 cut(s) 227, 519, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.