FvH4_6g39874

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000430
Physical Location & Seq
Forward (+)
31508160 .. 31509386
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39874.t1

Sequence Viewer

Length: 1119 bp
ATGAAGAAGACCAATCGATCCAATATGAAGAAAGCTTGCCGCATTCTCCAACTTCCGGATCACATACTCGTGGAAATATTTTGCAAAATCTCAGCGAAAACACTCACCCAATGCAGATTTGTGTGCAAGTCGTGGCATAGTTTCTTCAAAGATCCCCAGTTAATCAAAGACCTATTTTCAGGAACACTGCCCTCACCCTCCTCTTCCCTTTTGATATATGGTTCAACTGACTGCAACAACATCACATCCGAAGCTTATCATGAAGACCACTTCTACTTCTTAATCGATTGTGACAAGGCCTCGACGAGTCGCCGGAGACGACATGGCAAGGCACTGAACCCTTGCCCTAAAGACCTAGAGATCAGCTTCTGTGTAGAAATTGTGGGTTCTTGCAACGGCCTCCTGTGTCTAAACGAGCCAGGGCTCCAGTTTTACATATCCAATCCCATGACTAGTGAGTTCTCGCTTCTTCCAATATCAAAATCTTATCTTAAGAAATACTCACTTATTTTGGGGTTTGGATTTAGTCCCATCAGTAATGTCTATAAAGTACTGGATATTTATAGATTCCAGGAGTCTGCTAAAGTTGAAGCAATGGTTATGACTGTTGGCTCTGGTATTTGGAGAAGCATTGATGCAAACCCTATAATGAGTATATCCTCCAATAGGCAGCTGTGTCGCTCCCTATATGGGTTATGCTTATATATGACCTATCTGAATGGGTTTCTTCATTGGGCTGTTCCTAGTAATGGTTCTCTTTTGATATATGCCTTTGATCTTGAAACTGAGCAGTTCCAACAGTTACCACATTTTGATTTTGAATCTGGAGGCGCTCCGTGTAACCTTGGAGTTTTGAGAGGCTGCCTCTCCGACAGGTTATATTCTACAGTTTCTACTAACCTATTGAAAGTAACTGAGGAGGAGGAAGTATTGGTGTTCGATGAGAAAGAAAGGGAATTGAAGGTTTATGGTCCTGGAACAACCAGCAGTAAGACTGTTAAGGTTGGTCGCTCGCCAGTAGAGATTCACGGGGCATGCGACTATATTCCAAACTTTCTCTCACTTGACACTATCTTTCGTGGTAAAGACGACGTTGTAGATGATGAAAGTGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

373

Amino Acids

41.88

Weight (kDa)

6.46

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 55 9.8e-11 F-box domain
F-box-like PF12937 15 - 59 1.8e-10 F-box-like
FBA_3 PF08268 113 - 268 9.4e-16 F-box associated beta propeller domain
FBA_1 PF07734 122 - 279 4.3e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 1 cut(s) 40
AclWI GGATC 3 cut(s) 12, 66, 146
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 4 cut(s) 55, 666, 690, 749
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 7 cut(s) 148, 225, 590, 782, 821, 907, 961
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 3 cut(s) 418, 570, 973
AluBI AGCT 4 cut(s) 35, 254, 366, 673
AluI AGCT 4 cut(s) 35, 254, 366, 673
Alw26I GTCTC 1 cut(s) 310
AlwI GGATC 3 cut(s) 12, 66, 146
AlwNI CAGNNNCTG 1 cut(s) 369
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 297, 397
ApeKI GCWGC 2 cut(s) 670, 861
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 1 cut(s) 971
AsuHPI GGTGA 2 cut(s) 97, 186
AvaII GGWCC 1 cut(s) 971
BanII GRGCYC 1 cut(s) 426
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 14, 270
BbvI GCAGC 2 cut(s) 682, 848
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 412
BcgI CGANNNNNNTGC 2 cut(s) 659, 693
BciT130I CCWGG 3 cut(s) 420, 572, 975
BcoDI GTCTC 1 cut(s) 310
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 356, 453, 744
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 834
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 3 cut(s) 40, 671, 862
BlsI GCNGC 3 cut(s) 41, 672, 863
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 3 cut(s) 420, 572, 975
Bme18I GGWCC 1 cut(s) 971
BmgT120I GGNCC 1 cut(s) 971
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 3 cut(s) 420, 572, 975
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 2 cut(s) 14, 270
BplI GAGNNNNNCTC 2 cut(s) 849, 881
BpmI CTGGAG 2 cut(s) 410, 846
Bsa29I ATCGAT 2 cut(s) 16, 285
BsaJI CCNNGG 2 cut(s) 419, 844
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 666, 690, 749
Bse1I ACTGG 4 cut(s) 157, 427, 558, 1016
Bse3DI GCAATG 1 cut(s) 600
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 3 cut(s) 420, 572, 975
BseCI ATCGAT 2 cut(s) 16, 285
BseDI CCNNGG 2 cut(s) 419, 844
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 4 cut(s) 55, 666, 690, 749
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 3 cut(s) 105, 777, 906
BseNI ACTGG 4 cut(s) 157, 427, 558, 1016
BseRI GAGGAG 3 cut(s) 190, 932, 935
BseXI GCAGC 2 cut(s) 682, 848
BshFI GGCC 2 cut(s) 299, 399
BshVI ATCGAT 2 cut(s) 16, 285
BsiSI CCGG 2 cut(s) 56, 313
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 4 cut(s) 55, 666, 690, 749
BsmAI GTCTC 1 cut(s) 310
BsmBI CGTCTC 1 cut(s) 310
BsmFI GGGAC 1 cut(s) 513
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 2 cut(s) 299, 399
Bsp1286I GDGCHC 1 cut(s) 426
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 5 cut(s) 17, 58, 151, 360, 775
BspACI CCGC 1 cut(s) 40
BspANI GGCC 2 cut(s) 299, 399
BspCNI CTCAG 3 cut(s) 104, 778, 907
BspDI ATCGAT 2 cut(s) 16, 285
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 425
BspPI GGATC 3 cut(s) 12, 66, 146
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 4 cut(s) 157, 427, 558, 1016
BssECI CCNNGG 2 cut(s) 419, 844
BssMI GATC 5 cut(s) 17, 58, 151, 360, 775
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 844
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 420, 572, 975
Bst4CI ACNGT 4 cut(s) 607, 801, 889, 997
Bst6I CTCTTC 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 37, 1013, 1036
BstDEI CTNAG 3 cut(s) 91, 786, 915
BstENI CCTNNNNNAGG 1 cut(s) 664
BstF5I GGATG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 5 cut(s) 20, 61, 154, 363, 778
BstMAI GTCTC 1 cut(s) 310
BstMBI GATC 5 cut(s) 17, 58, 151, 360, 775
BstNI CCWGG 3 cut(s) 420, 572, 975
BstNSI RCATGY 1 cut(s) 1038
BstSCI CCNGG 3 cut(s) 418, 570, 973
BstSFI CTRYAG 1 cut(s) 885
BstV1I GCAGC 2 cut(s) 682, 848
BstV2I GAAGAC 2 cut(s) 14, 270
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
Bsu15I ATCGAT 2 cut(s) 16, 285
BsuRI GGCC 2 cut(s) 299, 399
BsuTUI ATCGAT 2 cut(s) 16, 285
BtsCI GGATG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 185, 332
Cac8I GCNNGC 3 cut(s) 37, 1013, 1036
CaiI CAGNNNCTG 1 cut(s) 369
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 833
Cfr13I GGNCC 1 cut(s) 971
ClaI ATCGAT 2 cut(s) 16, 285
Csp6I GTAC 1 cut(s) 551
CviAII CATG 4 cut(s) 260, 323, 448, 1035
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 91, 786, 915
DpnI GATC 5 cut(s) 19, 60, 153, 362, 777
DpnII GATC 5 cut(s) 17, 58, 151, 360, 775
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 844
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 971
EcoNI CCTNNNNNAGG 1 cut(s) 664
EcoRII CCWGG 3 cut(s) 418, 570, 973
EcoT14I CCWWGG 1 cut(s) 844
EcoT38I GRGCYC 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 310
FaeI CATG 4 cut(s) 263, 326, 451, 1038
FaqI GGGAC 1 cut(s) 513
FatI CATG 4 cut(s) 259, 322, 447, 1034
Fnu4HI GCNGC 3 cut(s) 40, 671, 862
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 426
Fsp4HI GCNGC 3 cut(s) 40, 671, 862
FspBI CTAG 3 cut(s) 356, 453, 744
GlaI GCGC 1 cut(s) 832
GluI GCNGC 3 cut(s) 40, 671, 862
GsuI CTGGAG 2 cut(s) 410, 846
HaeII RGCGCY 1 cut(s) 834
HaeIII GGCC 2 cut(s) 299, 399
HapII CCGG 2 cut(s) 56, 313
HhaI GCGC 1 cut(s) 833
Hin1II CATG 4 cut(s) 263, 326, 451, 1038
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HindIII AAGCTT 2 cut(s) 33, 252
HinfI GANTC 5 cut(s) 307, 567, 575, 821, 1024
HpaII CCGG 2 cut(s) 56, 313
HphI GGTGA 2 cut(s) 97, 186
Hpy188I TCNGA 3 cut(s) 250, 717, 871
Hpy188III TCNNGA 5 cut(s) 56, 180, 260, 779, 825
Hpy99I CGWCG 2 cut(s) 307, 1094
HpyAV CCTTC 1 cut(s) 955
HpyCH4III ACNGT 4 cut(s) 607, 801, 889, 997
HpyCH4IV ACGT 1 cut(s) 1092
HpyCH4V TGCA 6 cut(s) 84, 114, 126, 234, 393, 638
HpyF3I CTNAG 3 cut(s) 91, 786, 915
HpySE526I ACGT 1 cut(s) 1092
Hsp92II CATG 4 cut(s) 263, 326, 451, 1038
HspAI GCGC 1 cut(s) 831
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 5 cut(s) 17, 58, 151, 360, 775
LmnI GCTCC 3 cut(s) 429, 686, 838
Lsp1109I GCAGC 2 cut(s) 682, 848
LweI GCATC 1 cut(s) 625
MaeI CTAG 3 cut(s) 356, 453, 744
MaeII ACGT 1 cut(s) 1092
MaeIII GTNAC 4 cut(s) 290, 801, 839, 910
MalI GATC 5 cut(s) 19, 60, 153, 362, 777
MboI GATC 5 cut(s) 17, 58, 151, 360, 775
MboII GAAGA 8 cut(s) 16, 19, 40, 136, 195, 275, 461, 719
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 426
MluCI AATT 2 cut(s) 378, 956
MlyI GAGTC 2 cut(s) 316, 584
MmeI TCCRAC 3 cut(s) 73, 820, 894
MroI TCCGGA 1 cut(s) 55
MseI TTAA 5 cut(s) 161, 281, 492, 999, 1117
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 673
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 2 cut(s) 56, 313
MspR9I CCNGG 3 cut(s) 420, 572, 975
Mva1269I GAATGC 1 cut(s) 42
MvaI CCWGG 3 cut(s) 420, 572, 975
NdeII GATC 5 cut(s) 17, 58, 151, 360, 775
NlaIII CATG 4 cut(s) 263, 326, 451, 1038
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 1038
PaeI GCATGC 1 cut(s) 1038
PagI TCATGA 1 cut(s) 259
PceI AGGCCT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 2 cut(s) 316, 1035
PctI GAATGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 567, 821, 1024
PfoI TCCNGGA 2 cut(s) 570, 973
PkrI GCNGC 3 cut(s) 41, 672, 863
PleI GAGTC 2 cut(s) 315, 583
PpsI GAGTC 2 cut(s) 315, 583
Psp6I CCWGG 3 cut(s) 418, 570, 973
PspGI CCWGG 3 cut(s) 418, 570, 973
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 971
PstNI CAGNNNCTG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 5 cut(s) 161, 281, 492, 999, 1117
SatI GCNGC 3 cut(s) 40, 671, 862
Sau3AI GATC 5 cut(s) 17, 58, 151, 360, 775
Sau96I GGNCC 1 cut(s) 971
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 2 cut(s) 316, 584
ScrFI CCNGG 3 cut(s) 420, 572, 975
SduI GDGCHC 1 cut(s) 426
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 885
SinI GGWCC 1 cut(s) 971
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SpeI ACTAGT 1 cut(s) 452
SphI GCATGC 1 cut(s) 1038
Sse9I AATT 2 cut(s) 378, 956
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 78
SspMI CTAG 3 cut(s) 356, 453, 744
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 418, 570, 973
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 4 cut(s) 607, 801, 889, 997
TaiI ACGT 1 cut(s) 1095
TaqI TCGA 4 cut(s) 16, 285, 302, 939
TasI AATT 2 cut(s) 378, 956
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 3 cut(s) 567, 821, 1024
Tru1I TTAA 5 cut(s) 161, 281, 492, 999, 1117
Tru9I TTAA 5 cut(s) 161, 281, 492, 999, 1117
TscAI CASTG 2 cut(s) 192, 339
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 670, 861
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 17, 41, 276, 719, 1119
TspGWI ACGGA 1 cut(s) 825
TspRI CASTG 2 cut(s) 192, 339
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 971
XagI CCTNNNNNAGG 1 cut(s) 664
XceI RCATGY 1 cut(s) 1038
XspI CTAG 3 cut(s) 356, 453, 744
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.