Rw4G014750

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000430
Physical Location & Seq
Reverse (-)
34188565 .. 34191799
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G014750.1

Sequence Viewer

Length: 1152 bp
ATGAAGAAAACCAAAGTTTCCCACAGCCACCGACCATCCAACACTGACATCCCTCCAAACCAAGAAGACGAAGTAGAAGAAGAGCATCACATTCTCCGACTGCCAAACCGCATACTGCTGGAGTTCTTCTGCAAAATCCCAACGAAATGGCTCGCCCAATGCAAGTGTGTATGCAAGTCTTGGCGCCGGTTGCTTTCCGACCCTCATTTCACCAAAAGCCTCCTTTCACGAACACCCACTTACCTTCTGCTCCGAGACACTTGTTATCTCAAGAGCCTTGTCATCTTCGACTTCGAAAAGGCATCCGACAGAAATATGTTCGAGTTCTGGGAAAGGCCGAAAACCGAAGACGACTGCTTGACCAAGCTTTCTGGAGACCGCAATGCTCTCATTTCTGGCCAGGTCATCGGTTCATGCAATGGCTTCCTCTGCATATACAATGACTGGCCTAACCCTTGGCGTCTTTACATTTACAATCCCATTACTGGTGAGTCTCTGACTCTTCCAACGCCTGAAATGAAATGCTCCTTTTTTTGTGGCTTAGGGTATAGTCCAATCAGTGATGTGTACAAAGTAGTCATGTTTAAGTATCCGAGTGAAGGTCCTAATAATAAAAGGGAGGTGAAGGTCATGACTGTTGGCTCTGGGGTTTGGAGAACCATTGGGGATTTGGGGTTTAATGTTTTGGGGGATGCTGATACGAATGGGGTGTATCTTAATGGATTTCTTCACTGGATTGGTGAGTCTTGCACAGATTCGGTTTCGACATTTGCCTTTGATGTCGAAAATGAGTGCTTCCAAGAGTTGCCACCGCATCCTAGTGCTTTAAAAATCAAAAACATTAAAATCTTCAATGGTTGGCTGTCCATATTTCTTCGCAGAAGAGGTGTCATCAGTGTTTGGGTCATGAAGGATTATGGTGTTGAGGGGTCTTGGACCAAAGAGCTTGAAATTGAAAAGGCAAGTGATTCTCGAATCTTGATGTCTACAAACAAGGGGCAAGTGTTGATGTTACGTGATTGGGAAATTCACACTTATGATCTTGGAACAAAGAGGTATAAATGGGTTCCTGTCAATGGATTACCATTAGTGTTTCAAGAAATTGCACATACTCCAAGCTTTGTTTTGCTGAAAGACATCATCAAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

383

Amino Acids

44.12

Weight (kDa)

7.91

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 31 - 70 9.2e-08 F-box-like
F-box PF00646 31 - 72 5.6e-06 F-box domain
FBA_3 PF08268 98 - 320 1.4e-24 F-box associated beta propeller domain
FBA_1 PF07734 136 - 329 9.3e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 986
AciI CCGC 3 cut(s) 109, 379, 812
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 1 cut(s) 1026
AcyI GRCGYC 2 cut(s) 184, 460
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
AgsI TTSAA 4 cut(s) 853, 950, 956, 1097
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 3 cut(s) 367, 946, 1119
AluI AGCT 3 cut(s) 367, 946, 1119
Alw26I GTCTC 3 cut(s) 249, 369, 498
AoxI GGCC 3 cut(s) 335, 397, 446
ApoI RAATTY 1 cut(s) 1026
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 602, 936
AsuHPI GGTGA 4 cut(s) 202, 500, 634, 752
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 2 cut(s) 602, 936
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 72, 354
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 401
BciVI GTATCC 1 cut(s) 600
BcoDI GTCTC 3 cut(s) 249, 369, 498
BfaI CTAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 187
BfuI GTATCC 1 cut(s) 600
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 602, 936
BmgT120I GGNCC 2 cut(s) 602, 936
BmiI GGNNCC 2 cut(s) 185, 1068
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 4 cut(s) 94, 311, 682, 823
BpiI GAAGAC 2 cut(s) 72, 354
BpmI CTGGAG 2 cut(s) 140, 393
Bpu10I CCTNAGC 1 cut(s) 541
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 1016
BsaHI GRCGYC 2 cut(s) 184, 460
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 599, 1076
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 449, 490, 737
Bse3DI GCAATG 2 cut(s) 388, 424
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 455
BseGI GGATG 5 cut(s) 35, 48, 302, 697, 814
BseLI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
BseMI GCAATG 2 cut(s) 388, 424
BseNI ACTGG 3 cut(s) 449, 490, 737
BshFI GGCC 3 cut(s) 337, 399, 448
BshNI GGYRCC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 187
BslI CCNNNNNNNGG 3 cut(s) 485, 599, 1076
BsmAI GTCTC 3 cut(s) 249, 369, 498
BsnI GGCC 3 cut(s) 337, 399, 448
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 1 cut(s) 1039
BspACI CCGC 3 cut(s) 109, 379, 812
BspANI GGCC 3 cut(s) 337, 399, 448
BspHI TCATGA 2 cut(s) 630, 906
BspLI GGNNCC 2 cut(s) 185, 1068
BspQI GCTCTTC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 369
BsrDI GCAATG 2 cut(s) 388, 424
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 3 cut(s) 449, 490, 737
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 455
BssMI GATC 1 cut(s) 1039
BssNI GRCGYC 2 cut(s) 184, 460
BssT1I CCWWGG 1 cut(s) 455
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 75, 507, 877
BstACI GRCGYC 2 cut(s) 184, 460
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 541
BstF5I GGATG 5 cut(s) 35, 48, 302, 697, 814
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 1042
BstMAI GTCTC 3 cut(s) 249, 369, 498
BstMBI GATC 1 cut(s) 1039
BstMWI GCNNNNNNNGC 2 cut(s) 190, 429
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV2I GAAGAC 2 cut(s) 72, 354
BstXI CCANNNNNNTGG 1 cut(s) 147
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 3 cut(s) 337, 399, 448
BtsCI GGATG 5 cut(s) 35, 48, 302, 697, 814
BtsIMutI CAGTG 4 cut(s) 42, 565, 730, 901
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 2 cut(s) 630, 906
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 602, 936
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 568
CviAII CATG 4 cut(s) 414, 580, 631, 907
CviQI GTAC 1 cut(s) 568
DdeI CTNAG 1 cut(s) 541
DinI GGCGCC 1 cut(s) 185
DpnI GATC 1 cut(s) 1041
DpnII GATC 1 cut(s) 1039
DraI TTTAAA 1 cut(s) 828
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 75, 507, 877
EarI CTCTTC 3 cut(s) 75, 507, 877
Eco130I CCWWGG 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 602, 936
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 455
EgeI GGCGCC 1 cut(s) 185
EheI GGCGCC 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 455
FaeI CATG 4 cut(s) 417, 583, 634, 910
FatI CATG 4 cut(s) 413, 579, 630, 906
FblI GTMKAC 1 cut(s) 986
FokI GGATG 5 cut(s) 22, 35, 289, 704, 801
FspBI CTAG 1 cut(s) 819
GlaI GCGC 1 cut(s) 185
GsuI CTGGAG 2 cut(s) 140, 393
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 3 cut(s) 337, 399, 448
HapII CCGG 1 cut(s) 187
HgaI GACGC 1 cut(s) 449
HhaI GCGC 1 cut(s) 186
Hin1I GRCGYC 2 cut(s) 184, 460
Hin1II CATG 4 cut(s) 417, 583, 634, 910
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 2 cut(s) 365, 1117
HinfI GANTC 6 cut(s) 491, 499, 743, 755, 968, 975
HpaII CCGG 1 cut(s) 187
HphI GGTGA 4 cut(s) 202, 500, 634, 752
Hpy166II GTNNAC 2 cut(s) 568, 987
Hpy188I TCNGA 6 cut(s) 98, 199, 254, 307, 498, 594
Hpy188III TCNNGA 8 cut(s) 228, 271, 372, 631, 907, 972, 979, 1097
Hpy8I GTNNAC 2 cut(s) 568, 987
HpyAV CCTTC 4 cut(s) 254, 593, 619, 904
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 7 cut(s) 132, 162, 174, 417, 432, 750, 1106
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 429
HpyF3I CTNAG 1 cut(s) 541
HpySE526I ACGT 1 cut(s) 1015
Hsp92I GRCGYC 2 cut(s) 184, 460
Hsp92II CATG 4 cut(s) 417, 583, 634, 910
HspAI GCGC 1 cut(s) 184
KasI GGCGCC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 1039
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 2 cut(s) 255, 530
LweI GCATC 4 cut(s) 94, 311, 682, 823
MaeI CTAG 1 cut(s) 819
MaeII ACGT 1 cut(s) 1015
MaeIII GTNAC 1 cut(s) 1011
MalI GATC 1 cut(s) 1041
MboI GATC 1 cut(s) 1039
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 3 cut(s) 951, 1026, 1101
MluNI TGGCCA 1 cut(s) 399
Mly113I GGCGCC 1 cut(s) 184
MlyI GAGTC 3 cut(s) 493, 500, 752
MmeI TCCRAC 5 cut(s) 63, 121, 222, 330, 530
MnlI CCTC 8 cut(s) 63, 213, 230, 437, 613, 878, 919, 1047
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
MseI TTAA 5 cut(s) 585, 678, 717, 827, 843
MslI CAYNNNNRTG 2 cut(s) 819, 1035
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 2 cut(s) 190, 429
NarI GGCGCC 1 cut(s) 184
NdeII GATC 1 cut(s) 1039
NlaIII CATG 4 cut(s) 417, 583, 634, 910
NlaIV GGNNCC 2 cut(s) 185, 1068
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 2 cut(s) 630, 906
PciSI GCTCTTC 1 cut(s) 75
PfeI GAWTC 3 cut(s) 755, 968, 975
PleI GAGTC 3 cut(s) 493, 499, 751
PluTI GGCGCC 1 cut(s) 187
PpsI GAGTC 3 cut(s) 493, 499, 751
Ppu21I YACGTR 1 cut(s) 1016
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 2 cut(s) 185, 1068
PspPI GGNCC 2 cut(s) 602, 936
PspPPI RGGWCCY 1 cut(s) 602
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 819, 1035
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 5 cut(s) 585, 678, 717, 827, 843
Sau3AI GATC 1 cut(s) 1039
Sau96I GGNCC 2 cut(s) 602, 936
SchI GAGTC 3 cut(s) 493, 500, 752
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 4 cut(s) 94, 311, 682, 823
SfoI GGCGCC 1 cut(s) 185
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 2 cut(s) 602, 936
SmiMI CAYNNNNRTG 2 cut(s) 819, 1035
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 3 cut(s) 951, 1026, 1101
SsiI CCGC 3 cut(s) 109, 379, 812
SspDI GGCGCC 1 cut(s) 183
SspMI CTAG 1 cut(s) 819
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 455
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 6 cut(s) 288, 294, 321, 764, 783, 973
TasI AATT 3 cut(s) 951, 1026, 1101
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 3 cut(s) 755, 968, 975
Tru1I TTAA 5 cut(s) 585, 678, 717, 827, 843
Tru9I TTAA 5 cut(s) 585, 678, 717, 827, 843
TscAI CASTG 4 cut(s) 49, 565, 737, 901
TspDTI ATGAA 4 cut(s) 17, 402, 533, 923
TspRI CASTG 4 cut(s) 49, 565, 737, 901
VpaK11BI GGWCC 2 cut(s) 602, 936
XapI RAATTY 1 cut(s) 1026
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 986
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.