Prupe.1G167600_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13650000 .. 13651106
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G167600.1

Sequence Viewer

Length: 1107 bp
ATGAAGAAAACTCAAGTGTGCCACAGCCACCCACCAACCGACAGAGGTGGTCCTCCAAGTCAAGAAGATGAAGAGGAAGAGCATCATCAGAAACCCTACATTCTGCATTTGCCAGACCATATAACAATGGAGATCTTCTGCAAAATTCCAACAAAAACGCTCTTCCACTGCAAGCGCGTGTGCAAGTCTTGGCGCAGTTGCCTCTCAGACCCTGAATTCACCAAACACCTATTTTCACGAACACGCCCTTGCCTTGTGGTGTCTGGCTACACCATCCCCGAACCCGCAGGTCACTTCCTGGTCTACCTCGACACAGACTTGAGCGCAAACGACGCCGTGTTCAGGCTTTCCACAAGAGTAGGCCGAGATTGCAGTACATTCATTAGGGGTTCGTGCAACGGTTTCATCTTCTACGACATAGAACGTTTTGATGGCAGCCATCAACTTTACTTATCCAATCCCATCACTGGTGAGTCCTTAACTGTTCCACAACCTACCAAACCTTGTTTTAAGCCAATTTTGGGGTTTGGGTTTGCTCCCATTGCTGAAGTCTACAAAGTAGTTTGGATTGATGAAAACCAGGATGTAAATATTTTTACTGTGGGATCTGGGATTTGGAGAGAAATTGGCTCTCTGCCCTGTACTCCTCTAAGGCATACTGACTTTTATTTGAATGGTTTTCTTTACTGGATTGCTCGGCCTCGAAATACCATTTTCGTGTCTGCCTTTGATGTCGAAAGAGAGCGCTTCCAAGATTTAGTACTACCGCGTTCTTGGTGGGTGGATGAGGAGGTATTTAAGTATAGTCTTGGAGACTTGCAAGGCTGTCTCGCTTTCTTTGTTATCAGGATATGTGATGTGAGTGTGTGGGTGATGAGGGAGTCTTGGACAAAAGAGCTCGAAATTAGAGACCCAAATAGTTTTATTGGTGCTCCAATATTGAGATTTACAGAAGAGAGGAAAGTCTTGATGTTACGTTCGGATAAATTGGTCTCTTATAATCTTGCAACATCGGGCAATGTAGAGGTCGAGCTTGATGGGTTTCCAAGCTTTGTTAAGAATGCGTGGAACCTAACTCCAAGCTTTCTTTCACTTCAAGATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

369

Amino Acids

42.39

Weight (kDa)

5.91

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
Acc36I ACCTGC 1 cut(s) 278
AccI GTMKAC 2 cut(s) 303, 552
AccII CGCG 2 cut(s) 177, 769
AciI CCGC 2 cut(s) 285, 767
AclI AACGTT 1 cut(s) 424
AclWI GGATC 1 cut(s) 613
AcsI RAATTY 2 cut(s) 144, 215
AcuI CTGAAG 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 3 cut(s) 376, 643, 762
AfeI AGCGCT 1 cut(s) 746
AfiI CCNNNNNNNGG 3 cut(s) 342, 467, 521
AgsI TTSAA 2 cut(s) 673, 1097
AjnI CCWGG 2 cut(s) 297, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 1072, 1104
AluBI AGCT 4 cut(s) 898, 1033, 1050, 1083
AluI AGCT 4 cut(s) 898, 1033, 1050, 1083
Alw21I GWGCWC 2 cut(s) 900, 934
Alw26I GTCTC 4 cut(s) 807, 833, 903, 997
AlwI GGATC 1 cut(s) 613
AlwNI CAGNNNCTG 1 cut(s) 212
Aor51HI AGCGCT 1 cut(s) 746
AoxI GGCC 2 cut(s) 361, 698
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 2 cut(s) 144, 215
AspLEI GCGC 4 cut(s) 177, 195, 326, 747
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 211, 482, 883
AvaII GGWCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 900
Bbv12I GWGCWC 2 cut(s) 900, 934
BbvI GCAGC 1 cut(s) 447
BccI CCATC 5 cut(s) 281, 425, 447, 470, 1031
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 299, 581
BcoDI GTCTC 4 cut(s) 807, 833, 903, 997
BfoI RGCGCY 1 cut(s) 748
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 436
BlsI GCNGC 1 cut(s) 437
BmcAI AGTACT 1 cut(s) 762
Bme1390I CCNGG 2 cut(s) 299, 581
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 1070
BmrFI CCNGG 2 cut(s) 299, 581
BmsI GCATC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 333
BsaI GGTCTC 2 cut(s) 903, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 467, 521
Bse1I ACTGG 2 cut(s) 472, 692
Bse3DI GCAATG 2 cut(s) 540, 1024
BseBI CCWGG 2 cut(s) 299, 581
BseGI GGATG 3 cut(s) 273, 589, 790
BseLI CCNNNNNNNGG 3 cut(s) 342, 467, 521
BseMI GCAATG 2 cut(s) 540, 1024
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 2 cut(s) 472, 692
BseRI GAGGAG 2 cut(s) 636, 803
BseXI GCAGC 1 cut(s) 447
Bsh1236I CGCG 2 cut(s) 177, 769
BshFI GGCC 2 cut(s) 363, 700
BsiHKAI GWGCWC 2 cut(s) 900, 934
BslI CCNNNNNNNGG 3 cut(s) 342, 467, 521
BsmAI GTCTC 4 cut(s) 807, 833, 903, 997
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 2 cut(s) 363, 700
Bso31I GGTCTC 2 cut(s) 903, 997
Bsp1286I GDGCHC 2 cut(s) 900, 934
Bsp143I GATC 2 cut(s) 132, 605
BspACI CCGC 2 cut(s) 285, 767
BspANI GGCC 2 cut(s) 363, 700
BspCNI CTCAG 1 cut(s) 218
BspFNI CGCG 2 cut(s) 177, 769
BspLI GGNNCC 1 cut(s) 1070
BspMI ACCTGC 1 cut(s) 278
BspPI GGATC 1 cut(s) 613
BspQI GCTCTTC 2 cut(s) 72, 167
BspTNI GGTCTC 2 cut(s) 903, 997
BsrDI GCAATG 2 cut(s) 540, 1024
BsrI ACTGG 2 cut(s) 472, 692
BssMI GATC 2 cut(s) 132, 605
BssNI GRCGYC 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 299, 581
Bst4CI ACNGT 3 cut(s) 401, 484, 601
Bst6I CTCTTC 4 cut(s) 66, 72, 167, 948
BstACI GRCGYC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 205, 650
BstF5I GGATG 3 cut(s) 273, 589, 790
BstFNI CGCG 2 cut(s) 177, 769
BstH2I RGCGCY 1 cut(s) 748
BstHHI GCGC 4 cut(s) 177, 195, 326, 747
BstKTI GATC 2 cut(s) 135, 608
BstMAI GTCTC 4 cut(s) 807, 833, 903, 997
BstMBI GATC 2 cut(s) 132, 605
BstMWI GCNNNNNNNGC 3 cut(s) 332, 369, 542
BstNI CCWGG 2 cut(s) 299, 581
BstSCI CCNGG 2 cut(s) 297, 579
BstUI CGCG 2 cut(s) 177, 769
BstV1I GCAGC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 132, 605
BstYI RGATCY 2 cut(s) 132, 605
BsuRI GGCC 2 cut(s) 363, 700
BtsCI GGATG 3 cut(s) 273, 589, 790
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 465
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 4 cut(s) 177, 195, 326, 747
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 341
Csp6I GTAC 3 cut(s) 375, 642, 761
CviQI GTAC 3 cut(s) 375, 642, 761
DdeI CTNAG 2 cut(s) 205, 650
DpnI GATC 2 cut(s) 134, 607
DpnII GATC 2 cut(s) 132, 605
Eam1104I CTCTTC 4 cut(s) 66, 72, 167, 948
EarI CTCTTC 4 cut(s) 66, 72, 167, 948
Ecl136II GAGCTC 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 2 cut(s) 903, 997
Eco47I GGWCC 1 cut(s) 50
Eco47III AGCGCT 1 cut(s) 746
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 567
EcoICRI GAGCTC 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 2 cut(s) 297, 579
EcoT38I GRGCYC 1 cut(s) 900
FaiI YATR 9 cut(s) 120, 122, 419, 657, 804, 853, 999, 1103, 1105
FauI CCCGC 1 cut(s) 292
FblI GTMKAC 2 cut(s) 303, 552
Fnu4HI GCNGC 1 cut(s) 436
FokI GGATG 3 cut(s) 260, 596, 797
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 1 cut(s) 436
GlaI GCGC 4 cut(s) 176, 194, 325, 746
GluI GCNGC 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 748
HaeIII GGCC 2 cut(s) 363, 700
HgaI GACGC 1 cut(s) 341
HhaI GCGC 4 cut(s) 177, 195, 326, 747
Hin1I GRCGYC 1 cut(s) 333
Hin6I GCGC 4 cut(s) 175, 193, 324, 745
HinP1I GCGC 4 cut(s) 175, 193, 324, 745
HindIII AAGCTT 2 cut(s) 1048, 1081
HinfI GANTC 2 cut(s) 473, 881
HphI GGTGA 3 cut(s) 211, 482, 883
Hpy166II GTNNAC 2 cut(s) 304, 553
Hpy188I TCNGA 3 cut(s) 90, 208, 982
Hpy188III TCNNGA 5 cut(s) 62, 237, 847, 967, 1097
Hpy8I GTNNAC 2 cut(s) 304, 553
Hpy99I CGWCG 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 401, 484, 601
HpyCH4IV ACGT 2 cut(s) 424, 976
HpyCH4V TGCA 8 cut(s) 106, 141, 171, 183, 372, 396, 820, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 332, 369, 542
HpyF3I CTNAG 2 cut(s) 205, 650
HpySE526I ACGT 2 cut(s) 424, 976
Hsp92I GRCGYC 1 cut(s) 333
HspAI GCGC 4 cut(s) 175, 193, 324, 745
Kzo9I GATC 2 cut(s) 132, 605
LguI GCTCTTC 2 cut(s) 72, 167
LmnI GCTCC 2 cut(s) 541, 937
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 1 cut(s) 91
MaeII ACGT 2 cut(s) 424, 976
MaeIII GTNAC 2 cut(s) 290, 972
MalI GATC 2 cut(s) 134, 607
MboI GATC 2 cut(s) 132, 605
MboII GAAGA 8 cut(s) 16, 77, 83, 89, 127, 154, 400, 965
MflI RGATCY 2 cut(s) 132, 605
MhlI GDGCHC 2 cut(s) 900, 934
MluCI AATT 6 cut(s) 144, 215, 516, 624, 903, 986
MlyI GAGTC 2 cut(s) 482, 890
MmeI TCCRAC 1 cut(s) 173
MseI TTAA 4 cut(s) 479, 510, 798, 1056
MslI CAYNNNNRTG 1 cut(s) 716
MspR9I CCNGG 2 cut(s) 299, 581
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 299, 581
MvnI CGCG 2 cut(s) 177, 769
MwoI GCNNNNNNNGC 3 cut(s) 332, 369, 542
NdeII GATC 2 cut(s) 132, 605
NlaIV GGNNCC 1 cut(s) 1070
NmeAIII GCCGAG 2 cut(s) 389, 676
NmuCI GTSAC 1 cut(s) 290
PciSI GCTCTTC 2 cut(s) 72, 167
PctI GAATGC 1 cut(s) 1066
PkrI GCNGC 1 cut(s) 437
PleI GAGTC 2 cut(s) 481, 889
PpsI GAGTC 2 cut(s) 481, 889
PsiI TTATAA 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 900
Psp1406I AACGTT 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 297, 579
PspGI CCWGG 2 cut(s) 297, 579
PspN4I GGNNCC 1 cut(s) 1070
PspPI GGNCC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 132, 605
RsaI GTAC 3 cut(s) 376, 643, 762
RsaNI GTAC 3 cut(s) 375, 642, 761
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 900
SapI GCTCTTC 2 cut(s) 72, 167
SaqAI TTAA 4 cut(s) 479, 510, 798, 1056
SatI GCNGC 1 cut(s) 436
Sau3AI GATC 2 cut(s) 132, 605
Sau96I GGNCC 1 cut(s) 50
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 2 cut(s) 482, 890
ScrFI CCNGG 2 cut(s) 299, 581
SduI GDGCHC 2 cut(s) 900, 934
SfaNI GCATC 1 cut(s) 91
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 12, 319
SmoI CTYRAG 2 cut(s) 12, 319
Sse9I AATT 6 cut(s) 144, 215, 516, 624, 903, 986
SsiI CCGC 2 cut(s) 285, 767
SspI AATATT 2 cut(s) 592, 939
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 2 cut(s) 297, 579
TaaI ACNGT 3 cut(s) 401, 484, 601
TaiI ACGT 2 cut(s) 427, 979
TaqI TCGA 5 cut(s) 309, 703, 735, 900, 1029
TasI AATT 6 cut(s) 144, 215, 516, 624, 903, 986
TatI WGTACW 3 cut(s) 374, 641, 760
Tru1I TTAA 4 cut(s) 479, 510, 798, 1056
Tru9I TTAA 4 cut(s) 479, 510, 798, 1056
TscAI CASTG 2 cut(s) 173, 472
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 5 cut(s) 17, 84, 370, 394, 588
TspRI CASTG 2 cut(s) 173, 472
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 144, 215
XmiI GTMKAC 2 cut(s) 303, 552
ZrmI AGTACT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.