Prupe.1G187600_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
17182701 .. 17183724
1024 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G187600.1

Sequence Viewer

Length: 732 bp
ATGAAGAGAATTAAACTACCATCAACCAACAGAAACAGACCCCCAAAACAAGAAGTCGACGATGAAGAAGAAGAGCATGAACATAAACCCTACCTTCTGCAATTGCCAGAGCACATAATAATGGAGATCTTCTGCAAAATCCCAACAAAAACTCTCATCCAATGCAAGCGAGTTCGCAAGTCTTGGCGTCGTTGGCTCTCAGACCCTCAATTCACCAAAGAACTATTTTCACGAACGCCCGCTTCCATTTTGATCACTGGATACTCGTGCCTGGGTCACTTCTTGGTCGACCTTGACAGGACCTGCAACCCAAAAGACGTCGTGTTGAAGCTTTCCTGTATAAACAAAAGTCTCCGAACTTTAAGTAAGAGCATTGTAGGCTCGTGCAATGGCTTCCTCTGTCACCACGAAGTCCATCATCTCCACATCTCCAATCCTGTTACTGGTGAGTTTTTATCTCTCCCAACACCTTCAAAGCCTGATACAGTTGGAGGACGTTATGGTTTTGGGTTCAGCCCCATCAGTGATGTCTATAAGCTAGTTCGGATTATGCCTATACATAAACAAGTAATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAGACATTGGGCACCCTCCCGACTCTTTTGATGGAGAAACGTTGGGGAAACCTTGTGCCTACCAAAACTATTTTGATAGTATGAATGATCATGGGACTTATGTCAATGGGTTTCTTCATTGGATTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

244

Amino Acids

27.78

Weight (kDa)

8.73

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 612
AccI GTMKAC 2 cut(s) 57, 288
AciI CCGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 641
AcyI GRCGYC 2 cut(s) 187, 318
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 328, 474
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 2 cut(s) 331, 538
AluI AGCT 2 cut(s) 331, 538
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 2 cut(s) 356, 597
AlwNI CAGNNNCTG 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 300
AsuHPI GGTGA 3 cut(s) 205, 395, 458
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 615
BanI GGYRCC 1 cut(s) 612
BauI CACGAG 2 cut(s) 265, 382
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 4 cut(s) 28, 423, 527, 626
BciT130I CCWGG 1 cut(s) 272
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 2 cut(s) 252, 688
BcoDI GTCTC 2 cut(s) 356, 597
BfaI CTAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 1 cut(s) 254
BglII AGATCT 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 614
BmrFI CCNGG 1 cut(s) 272
BoxI GACNNNNGTC 1 cut(s) 701
BsaHI GRCGYC 2 cut(s) 187, 318
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 262, 448
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 262, 448
BseSI GKGCMC 1 cut(s) 615
BshNI GGYRCC 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 356, 597
BsmFI GGGAC 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 114, 615
Bsp143I GATC 3 cut(s) 126, 252, 688
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 614
BspMI ACCTGC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 262, 448
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 3 cut(s) 126, 252, 688
BssNI GRCGYC 2 cut(s) 187, 318
BssSI CACGAG 2 cut(s) 265, 382
Bst2BI CACGAG 2 cut(s) 265, 382
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 487, 583
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 2 cut(s) 187, 318
BstC8I GCNNGC 2 cut(s) 167, 240
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 3 cut(s) 129, 255, 691
BstMAI GTCTC 2 cut(s) 356, 597
BstMBI GATC 3 cut(s) 126, 252, 688
BstMWI GCNNNNNNNGC 2 cut(s) 193, 378
BstNI CCWGG 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 2 cut(s) 255, 529
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 167, 240
CaiI CAGNNNCTG 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 300
CseI GACGC 1 cut(s) 176
CviAII CATG 2 cut(s) 77, 692
CviJI RGCY 8 cut(s) 196, 331, 381, 393, 478, 516, 538, 588
CviKI_1 RGCY 8 cut(s) 196, 331, 381, 393, 478, 516, 538, 588
DdeI CTNAG 1 cut(s) 199
DpnI GATC 3 cut(s) 128, 254, 690
DpnII GATC 3 cut(s) 126, 252, 688
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 80, 695
FaqI GGGAC 1 cut(s) 709
FatI CATG 2 cut(s) 76, 691
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 2 cut(s) 252, 688
FblI GTMKAC 2 cut(s) 57, 288
FokI GGATG 1 cut(s) 143
FspBI CTAG 1 cut(s) 539
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 2 cut(s) 187, 318
Hin1II CATG 2 cut(s) 80, 695
HincII GTYRAC 2 cut(s) 58, 289
HindII GTYRAC 2 cut(s) 58, 289
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 1 cut(s) 623
HphI GGTGA 3 cut(s) 205, 395, 458
Hpy166II GTNNAC 2 cut(s) 58, 289
Hpy188I TCNGA 3 cut(s) 202, 356, 546
Hpy188III TCNNGA 2 cut(s) 231, 620
Hpy8I GTNNAC 2 cut(s) 58, 289
Hpy99I CGWCG 3 cut(s) 62, 192, 323
HpyAV CCTTC 2 cut(s) 104, 480
HpyCH4III ACNGT 2 cut(s) 487, 583
HpyCH4IV ACGT 3 cut(s) 318, 496, 641
HpyCH4V TGCA 5 cut(s) 100, 135, 165, 306, 387
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 378
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 3 cut(s) 318, 496, 641
Hsp92I GRCGYC 2 cut(s) 187, 318
Hsp92II CATG 2 cut(s) 80, 695
Ksp22I TGATCA 2 cut(s) 252, 688
Kzo9I GATC 3 cut(s) 126, 252, 688
LguI GCTCTTC 1 cut(s) 66
MaeI CTAG 1 cut(s) 539
MaeII ACGT 3 cut(s) 318, 496, 641
MaeIII GTNAC 3 cut(s) 275, 401, 439
MalI GATC 3 cut(s) 128, 254, 690
MboI GATC 3 cut(s) 126, 252, 688
MboII GAAGA 6 cut(s) 16, 77, 80, 83, 121, 707
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 114, 615
MluCI AATT 3 cut(s) 9, 101, 209
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 4 cut(s) 216, 407, 485, 627
MseI TTAA 2 cut(s) 12, 362
MslI CAYNNNNRTG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 2 cut(s) 193, 378
NdeII GATC 3 cut(s) 126, 252, 688
NlaIII CATG 2 cut(s) 80, 695
NlaIV GGNNCC 1 cut(s) 614
NmuCI GTSAC 2 cut(s) 275, 401
PciSI GCTCTTC 1 cut(s) 66
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
PpuMI RGGWCCY 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 701
Psp1406I AACGTT 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 614
PspPI GGNCC 1 cut(s) 300
PspPPI RGGWCCY 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 303
PsuI RGATCY 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 119
SalI GTCGAC 2 cut(s) 56, 287
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 12, 362
Sau3AI GATC 3 cut(s) 126, 252, 688
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 2 cut(s) 114, 615
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 9, 101, 209
SsiI CCGC 1 cut(s) 240
SspMI CTAG 1 cut(s) 539
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 487, 583
TaiI ACGT 3 cut(s) 321, 499, 644
TaqI TCGA 2 cut(s) 57, 288
TasI AATT 3 cut(s) 9, 101, 209
Tru1I TTAA 2 cut(s) 12, 362
Tru9I TTAA 2 cut(s) 12, 362
TscAI CASTG 2 cut(s) 262, 529
TseFI GTSAC 2 cut(s) 275, 401
Tsp45I GTSAC 2 cut(s) 275, 401
TspDTI ATGAA 5 cut(s) 17, 78, 93, 698, 707
TspRI CASTG 2 cut(s) 262, 529
VpaK11BI GGWCC 1 cut(s) 300
XmiI GTMKAC 2 cut(s) 57, 288
XspI CTAG 1 cut(s) 539
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.