Prupe.1G169600_v2.0.a1

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Forward (+)
13900643 .. 13903179
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G169600.1

Sequence Viewer

Length: 1044 bp
ATGAAAAGAAAGAGACTGGCCCCAAGCCACTCCCCAAAGAGCATTGAATCTGATCGACCTACAAAACAAGAAGAAGACCATGAGGAGAAGCCCTATATTCTCCATCTGCCAGACCACATAATAGTGGAGATCTTCTGCAAAATCCCAACAAAAAAGCTCATACAATTCCGGTGCGTGTGCAAGTCTTGGCGCTGCTTGCCCTCCGATCCCCAGTTCACCAAAGACTTGTTTTCTCGAACTCCTGCTCGCTTTCTGATCCAAGGCAGGTTATCCCGCATAGGCTTGTCGACGAGCCTCTTCTTGGTGGACTTCAACAACTCCGTCACGTTGAAGCTTTATAAAGACCAAAATTCCCAAACTGTCCGTGTAAACAACATCGTGGGTTCATGCAACGGCGTCATCTGCTCTTTACCTCTTCCAATAAACCCTGTGGATAAGCAAATTGGTTTCACAAGGCTTTGGGGGTTTGGGTATTGTCCCATGCGTGATGTCTATAAAGTGGTTCTGATTCAGATTGCAAATGACTGGTCTAAGAAACCGGAAGTAACAGTTATGACGATTGGTTCTGGTATTTGGAGGGGCCTTGGGAATTATGCATACCATATTGCATACCATTTTGCGGATCAGCCATATGGGGTTTATCTTAATGGATTTCTTCATTGGGTTGGTTACAGAGGGGAGAGCCCCGATTTCATATGTGCTCTTGACTTGGAATGTGAGTGTTTCCAGCAAATTCTACTACCGCCTGTCTTGAAAGGTCGGCTCTCTATAACTGTTCAGATGCTTAATATTATGATTGTTTGGGTGATGAAGGATTATGGCGTTAAAGAGTCTTGGACTCCAGAGCTTAGGATTATTATCCGCGGCCTGTTTTTTTGGTCTCTATCTTTTCCTAAAGTGTTGAATCTTACAGAAGAAGGGGAAGTGTTGTTGTTAGATAAGTCTGACTTGCACTGTTACAATTCACTACCTATATATAACTCTGTTAAAGTTTCCATTAAGTCAAGTGTATTTTTAAGGGCATTTTTTTCAATTTCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

348

Amino Acids

39.92

Weight (kDa)

9.02

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
Acc36I ACCTGC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 287
AccII CGCG 1 cut(s) 864
AciI CCGC 5 cut(s) 274, 620, 743, 862, 864
AclWI GGATC 3 cut(s) 200, 250, 630
AcsI RAATTY 2 cut(s) 349, 732
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 301, 619
AgsI TTSAA 6 cut(s) 47, 313, 331, 754, 904, 1032
AluBI AGCT 3 cut(s) 157, 334, 847
AluI AGCT 3 cut(s) 157, 334, 847
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 2 cut(s) 7, 885
AlwI GGATC 3 cut(s) 200, 250, 630
AoxI GGCC 3 cut(s) 18, 580, 865
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 2 cut(s) 349, 732
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 19, 580
AsuHPI GGTGA 2 cut(s) 208, 817
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 111
BceAI ACGGC 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 7, 885
BfoI RGCGCY 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 255
BglII AGATCT 1 cut(s) 129
BisI GCNGC 2 cut(s) 193, 865
BlsI GCNGC 2 cut(s) 194, 866
BmgT120I GGNCC 2 cut(s) 19, 580
BmiI GGNNCC 2 cut(s) 21, 581
BmrI ACTGGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 771
BmuI ACTGGG 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 848
BsaBI GATNNNNATC 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 3 cut(s) 259, 583, 862
BsaWI WCCGGW 2 cut(s) 168, 538
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 619
Bse1I ACTGG 3 cut(s) 21, 211, 530
Bse8I GATNNNNATC 1 cut(s) 857
BseDI CCNNGG 3 cut(s) 259, 583, 862
BseJI GATNNNNATC 1 cut(s) 857
BseLI CCNNNNNNNGG 2 cut(s) 301, 619
BseNI ACTGG 3 cut(s) 21, 211, 530
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 864
BshFI GGCC 3 cut(s) 20, 582, 867
BsiHKAI GWGCWC 1 cut(s) 703
BsiSI CCGG 2 cut(s) 169, 539
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 2 cut(s) 301, 619
BsmAI GTCTC 2 cut(s) 7, 885
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 3 cut(s) 20, 582, 867
Bso31I GGTCTC 1 cut(s) 885
Bsp1286I GDGCHC 2 cut(s) 686, 703
Bsp143I GATC 5 cut(s) 52, 129, 205, 255, 622
BspACI CCGC 5 cut(s) 274, 620, 743, 862, 864
BspANI GGCC 3 cut(s) 20, 582, 867
BspFNI CGCG 1 cut(s) 864
BspLI GGNNCC 2 cut(s) 21, 581
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 3 cut(s) 200, 250, 630
BspTNI GGTCTC 1 cut(s) 885
BsrI ACTGG 3 cut(s) 21, 211, 530
BssECI CCNNGG 3 cut(s) 259, 583, 862
BssMI GATC 5 cut(s) 52, 129, 205, 255, 622
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 259, 583
Bst4CI ACNGT 4 cut(s) 361, 550, 775, 956
Bst6I CTCTTC 2 cut(s) 302, 420
BstACI GRCGYC 1 cut(s) 396
BstC8I GCNNGC 2 cut(s) 197, 247
BstDEI CTNAG 2 cut(s) 531, 848
BstDSI CCRYGG 1 cut(s) 862
BstFNI CGCG 1 cut(s) 864
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 5 cut(s) 55, 132, 208, 258, 625
BstMAI GTCTC 2 cut(s) 7, 885
BstMBI GATC 5 cut(s) 52, 129, 205, 255, 622
BstMWI GCNNNNNNNGC 2 cut(s) 196, 402
BstUI CGCG 1 cut(s) 864
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 3 cut(s) 20, 582, 867
BtgI CCRYGG 1 cut(s) 862
BtsIMutI CAGTG 1 cut(s) 952
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 197, 247
CfoI GCGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 19, 580
Cfr42I CCGCGG 1 cut(s) 865
CseI GACGC 1 cut(s) 385
CviAII CATG 3 cut(s) 80, 387, 481
DdeI CTNAG 2 cut(s) 531, 848
DpnI GATC 5 cut(s) 54, 131, 207, 257, 624
DpnII GATC 5 cut(s) 52, 129, 205, 255, 622
Eam1104I CTCTTC 2 cut(s) 302, 420
EarI CTCTTC 2 cut(s) 302, 420
Eco130I CCWWGG 2 cut(s) 259, 583
Eco24I GRGCYC 1 cut(s) 686
Eco31I GGTCTC 1 cut(s) 885
EcoO109I RGGNCCY 1 cut(s) 580
EcoT14I CCWWGG 2 cut(s) 259, 583
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 2 cut(s) 259, 583
FaeI CATG 3 cut(s) 83, 390, 484
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FaqI GGGAC 1 cut(s) 462
FatI CATG 3 cut(s) 79, 386, 480
FauI CCCGC 1 cut(s) 281
FauNDI CATATG 2 cut(s) 631, 695
FblI GTMKAC 1 cut(s) 287
Fnu4HI GCNGC 2 cut(s) 193, 865
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 2 cut(s) 193, 865
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 193, 865
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 20, 582, 867
HapII CCGG 2 cut(s) 169, 539
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 83, 390, 484
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 5 cut(s) 47, 508, 830, 838, 904
HpaII CCGG 2 cut(s) 169, 539
HphI GGTGA 2 cut(s) 208, 817
Hpy166II GTNNAC 4 cut(s) 216, 288, 307, 370
Hpy188I TCNGA 7 cut(s) 52, 205, 255, 507, 513, 780, 946
Hpy188III TCNNGA 4 cut(s) 234, 704, 751, 842
Hpy8I GTNNAC 4 cut(s) 216, 288, 307, 370
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 805, 911
HpyCH4III ACNGT 4 cut(s) 361, 550, 775, 956
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 7 cut(s) 138, 180, 390, 518, 596, 608, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 402
HpyF3I CTNAG 2 cut(s) 531, 848
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 83, 390, 484
HspAI GCGC 1 cut(s) 190
KspI CCGCGG 1 cut(s) 865
Kzo9I GATC 5 cut(s) 52, 129, 205, 255, 622
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 771
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 4 cut(s) 322, 544, 668, 956
MalI GATC 5 cut(s) 54, 131, 207, 257, 624
MboI GATC 5 cut(s) 52, 129, 205, 255, 622
MboII GAAGA 7 cut(s) 83, 86, 124, 289, 407, 647, 926
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 686, 703
MluCI AATT 7 cut(s) 164, 349, 441, 589, 732, 961, 1032
MlyI GAGTC 2 cut(s) 832, 839
MnlI CCTC 6 cut(s) 76, 211, 305, 423, 570, 668
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 6 cut(s) 645, 786, 825, 987, 999, 1016
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 864
MspI CCGG 2 cut(s) 169, 539
MvnI CGCG 1 cut(s) 864
MwoI GCNNNNNNNGC 2 cut(s) 196, 402
NdeI CATATG 2 cut(s) 631, 695
NdeII GATC 5 cut(s) 52, 129, 205, 255, 622
NlaIII CATG 3 cut(s) 83, 390, 484
NlaIV GGNNCC 2 cut(s) 21, 581
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 598
PfeI GAWTC 3 cut(s) 47, 508, 904
PkrI GCNGC 2 cut(s) 194, 866
PleI GAGTC 2 cut(s) 832, 838
PpsI GAGTC 2 cut(s) 832, 838
PsiI TTATAA 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 21, 581
PspPI GGNCC 2 cut(s) 19, 580
PsuI RGATCY 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 122
SacII CCGCGG 1 cut(s) 865
SalI GTCGAC 1 cut(s) 286
SaqAI TTAA 6 cut(s) 645, 786, 825, 987, 999, 1016
SatI GCNGC 2 cut(s) 193, 865
Sau3AI GATC 5 cut(s) 52, 129, 205, 255, 622
Sau96I GGNCC 2 cut(s) 19, 580
SchI GAGTC 2 cut(s) 832, 839
SduI GDGCHC 2 cut(s) 686, 703
SetI ASST 9 cut(s) 61, 159, 269, 329, 336, 415, 760, 849, 973
SfaNI GCATC 1 cut(s) 771
Sfr303I CCGCGG 1 cut(s) 865
SgrBI CCGCGG 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 122
Sse9I AATT 7 cut(s) 164, 349, 441, 589, 732, 961, 1032
SsiI CCGC 5 cut(s) 274, 620, 743, 862, 864
SspI AATATT 1 cut(s) 790
StyI CCWWGG 2 cut(s) 259, 583
TaaI ACNGT 4 cut(s) 361, 550, 775, 956
TaiI ACGT 1 cut(s) 329
TaqI TCGA 3 cut(s) 55, 235, 287
TasI AATT 7 cut(s) 164, 349, 441, 589, 732, 961, 1032
TauI GCSGC 1 cut(s) 867
TfiI GAWTC 3 cut(s) 47, 508, 904
Tru1I TTAA 6 cut(s) 645, 786, 825, 987, 999, 1016
Tru9I TTAA 6 cut(s) 645, 786, 825, 987, 999, 1016
TscAI CASTG 1 cut(s) 959
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 5 cut(s) 17, 375, 647, 682, 824
TspGWI ACGGA 2 cut(s) 310, 353
TspRI CASTG 1 cut(s) 959
XapI RAATTY 2 cut(s) 349, 732
XmiI GTMKAC 1 cut(s) 287
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.