Prupe.1G170100_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
14006851 .. 14009377
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G170100.2

Sequence Viewer

Length: 1203 bp
ATGGCTGTACCTGTAGCCATGGAGAAAACCAACACTGAGAAAGAAGAACATGATAATAAACCCTACATTCTGCAATTGCCAGACCACATAACAGTGCATATCTTCTGCAAAGTCCCAATCAAAACCCTAATCCAATGTCAGTGTGTGTGCAAGTCTTGGCGCCACTCGCTCTCAGACCCCCACTTTACCAAAGACCTATTTTCACGAACACCCCCTTCCTTTTTGTTCCATGGCTTAAGCGGTGGCCCCATAAACCCCAAATCAGAGGGCTATTTATTGGTTGACCTCAATAAGATCTCAAGCCCCAACGATTTCACACTCAAGCTGTATAAAGATCCTAATGTCCGGAACCTTCGTGTGGGAGTTTTGGGTTCTTGCAATGGTTTGCTCTGCATATATGAATTGAACCGCCGCTGTTTTTACATTTCCAACCCCATAACTAGTGAGTCTTTAGCTCTTCCAACACTATCATTGTCTCCCCTTACTATCGCCTATTGTGAGCGTGAGAGAATTGATAATCCATATTATTGTGGATTTGGGTATAGTCCCATCAGCAATTCATATAAAGTTGTTCTGTATCTGTCTTCAAGCGGTAAATCTCATGAATATGAAGTATTGGTTTTGACTGTTGGGTCCAGGATTTGGAGAAGCATTGGAAATGTTTCTGTGTTCCCTTCCTCTCGGTTTCAACCGTATGGGGTTTATGTTAATGGATTTCTTCATTGGGTTGGTCAGTATGGGAATAGTTCTACTTTGATATGTGCCTTTGATGTTGAAAGCGAGTGTTTCCAGCAGTTATCACTACCGCCTTATGATTTGGATTTACAGCTACCGGCTAATTGTTTAGATTTCCTAGACACTCAATTTACCCTTGGAGTCTTGAATGGTTCCCTCTCTGTAACTGTTCGATCTTGCTCAAGAAGTAATATCACTGTTTGGCTGATGAAGGATTATGGCATTCATGAGTCTTGGACCAAAGAGCTTGAAATTAGCAGCGACGTACTTGGTTCTCCATCTTTTTCCCGAGTATTGAAGTTTACAGAGGATGGGCAAGTCTTGCTTTTAAATGGGTCTCACTTGCAGGCTTATACTCCTGGAACAAGGAGTGTTGTGACCATTGAGGTTGATGGAATACCATCTTTGGTTGATGAATGCGTCCATATTCCAAGCTTTGTTTCACTTAGAGGTGTCATCACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

401

Amino Acids

44.66

Weight (kDa)

6.12

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 631
AccB1I GGYRCC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 642
AccIII TCCGGA 1 cut(s) 345
AciI CCGC 5 cut(s) 240, 409, 412, 591, 806
AclWI GGATC 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 9, 1002
AfiI CCNNNNNNNGG 2 cut(s) 358, 642
AflII CTTAAG 1 cut(s) 235
AgsI TTSAA 7 cut(s) 406, 588, 689, 776, 883, 986, 1033
AhlI ACTAGT 1 cut(s) 440
AjnI CCWGG 2 cut(s) 635, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AluBI AGCT 5 cut(s) 325, 455, 829, 982, 1170
AluI AGCT 5 cut(s) 325, 455, 829, 982, 1170
Alw26I GTCTC 2 cut(s) 480, 1077
AlwI GGATC 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 1023
Aor13HI TCCGGA 1 cut(s) 345
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 993
Asp700I GAANNNNTTC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 245, 633, 972
AvaI CYCGRG 1 cut(s) 1023
AvaII GGWCC 2 cut(s) 633, 972
BanI GGYRCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 576
BbvI GCAGC 1 cut(s) 1005
BccI CCATC 5 cut(s) 557, 1021, 1040, 1121, 1144
BciT130I CCWGG 2 cut(s) 637, 1095
BcoDI GTCTC 2 cut(s) 480, 1077
BcuI ACTAGT 1 cut(s) 440
BfaI CTAG 2 cut(s) 441, 854
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 294
BisI GCNGC 2 cut(s) 412, 994
BlsI GCNGC 2 cut(s) 413, 995
Bme1390I CCNGG 2 cut(s) 637, 1095
Bme18I GGWCC 2 cut(s) 633, 972
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 3 cut(s) 245, 633, 972
BmiI GGNNCC 5 cut(s) 161, 247, 350, 634, 889
BmrFI CCNGG 2 cut(s) 637, 1095
BpiI GAAGAC 1 cut(s) 576
BpuEI CTTGAG 3 cut(s) 283, 305, 901
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 1077
BsaJI CCNNGG 3 cut(s) 18, 229, 871
BsaWI WCCGGW 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 642
Bse118I RCCGGY 1 cut(s) 832
Bse1I ACTGG 1 cut(s) 1201
Bse3DI GCAATG 1 cut(s) 385
BseAI TCCGGA 1 cut(s) 345
BseBI CCWGG 2 cut(s) 637, 1095
BseDI CCNNGG 3 cut(s) 18, 229, 871
BseGI GGATG 1 cut(s) 1051
BseLI CCNNNNNNNGG 2 cut(s) 358, 642
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 27, 186
BseNI ACTGG 1 cut(s) 1201
BseXI GCAGC 1 cut(s) 1005
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 1023
BsiSI CCGG 2 cut(s) 346, 833
BslFI GGGAC 2 cut(s) 98, 531
BslI CCNNNNNNNGG 2 cut(s) 358, 642
BsmAI GTCTC 2 cut(s) 480, 1077
BsmFI GGGAC 2 cut(s) 98, 531
BsmI GAATGC 2 cut(s) 957, 1157
BsnI GGCC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 1077
BsoBI CYCGRG 1 cut(s) 1023
Bsp13I TCCGGA 1 cut(s) 345
Bsp143I GATC 3 cut(s) 294, 334, 908
Bsp19I CCATGG 2 cut(s) 18, 229
BspACI CCGC 5 cut(s) 240, 409, 412, 591, 806
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 2 cut(s) 28, 185
BspEI TCCGGA 1 cut(s) 345
BspHI TCATGA 2 cut(s) 601, 961
BspLI GGNNCC 5 cut(s) 161, 247, 350, 634, 889
BspPI GGATC 1 cut(s) 329
BspQI GCTCTTC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 1077
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 832
BsrI ACTGG 1 cut(s) 1201
BssAI RCCGGY 1 cut(s) 832
BssECI CCNNGG 3 cut(s) 18, 229, 871
BssMI GATC 3 cut(s) 294, 334, 908
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 3 cut(s) 18, 229, 871
Bst2UI CCWGG 2 cut(s) 637, 1095
Bst4CI ACNGT 5 cut(s) 94, 628, 693, 904, 934
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 160
BstAFI CTTAAG 1 cut(s) 235
BstAPI GCANNNNNTGC 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 1083
BstDEI CTNAG 3 cut(s) 36, 172, 1181
BstDSI CCRYGG 2 cut(s) 18, 229
BstF5I GGATG 1 cut(s) 1051
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 297, 337, 911
BstMAI GTCTC 2 cut(s) 480, 1077
BstMBI GATC 3 cut(s) 294, 334, 908
BstMWI GCNNNNNNNGC 2 cut(s) 166, 1057
BstNI CCWGG 2 cut(s) 637, 1095
BstSCI CCNGG 2 cut(s) 635, 1093
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 1005
BstV2I GAAGAC 1 cut(s) 576
BstX2I RGATCY 2 cut(s) 294, 334
BstYI RGATCY 2 cut(s) 294, 334
BsuRI GGCC 1 cut(s) 246
BtgI CCRYGG 2 cut(s) 18, 229
BtsCI GGATG 1 cut(s) 1051
BtsIMutI CAGTG 5 cut(s) 33, 99, 146, 930, 1194
Cac8I GCNNGC 1 cut(s) 1083
CciI TCATGA 2 cut(s) 601, 961
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 832
Cfr13I GGNCC 3 cut(s) 245, 633, 972
CseI GACGC 1 cut(s) 1144
Csp6I GTAC 2 cut(s) 8, 1001
CviAII CATG 5 cut(s) 19, 50, 230, 602, 962
CviQI GTAC 2 cut(s) 8, 1001
DdeI CTNAG 3 cut(s) 36, 172, 1181
DinI GGCGCC 1 cut(s) 161
DpnI GATC 3 cut(s) 296, 336, 910
DpnII GATC 3 cut(s) 294, 334, 908
DraI TTTAAA 1 cut(s) 1065
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco130I CCWWGG 3 cut(s) 18, 229, 871
Eco31I GGTCTC 1 cut(s) 1077
Eco47I GGWCC 2 cut(s) 633, 972
Eco88I CYCGRG 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 635, 1093
EcoT14I CCWWGG 3 cut(s) 18, 229, 871
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 3 cut(s) 18, 229, 871
FaeI CATG 5 cut(s) 22, 53, 233, 605, 965
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 2 cut(s) 98, 531
FatI CATG 5 cut(s) 18, 49, 229, 601, 961
Fnu4HI GCNGC 2 cut(s) 412, 994
FokI GGATG 1 cut(s) 1058
Fsp4HI GCNGC 2 cut(s) 412, 994
FspBI CTAG 2 cut(s) 441, 854
GlaI GCGC 1 cut(s) 161
GluI GCNGC 2 cut(s) 412, 994
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 246
HapII CCGG 2 cut(s) 346, 833
HgaI GACGC 1 cut(s) 1144
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 5 cut(s) 22, 53, 233, 605, 965
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 1168
HinfI GANTC 3 cut(s) 446, 876, 965
HpaII CCGG 2 cut(s) 346, 833
Hpy166II GTNNAC 2 cut(s) 283, 1038
Hpy188I TCNGA 2 cut(s) 175, 265
Hpy188III TCNNGA 7 cut(s) 204, 346, 602, 880, 918, 962, 1023
Hpy8I GTNNAC 2 cut(s) 283, 1038
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 4 cut(s) 225, 362, 684, 940
HpyCH4III ACNGT 5 cut(s) 94, 628, 693, 904, 934
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 7 cut(s) 73, 97, 108, 150, 378, 393, 1081
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 1057
HpyF3I CTNAG 3 cut(s) 36, 172, 1181
HpySE526I ACGT 1 cut(s) 999
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 5 cut(s) 22, 53, 233, 605, 965
HspAI GCGC 1 cut(s) 160
KasI GGCGCC 1 cut(s) 159
Kpn2I TCCGGA 1 cut(s) 345
Kzo9I GATC 3 cut(s) 294, 334, 908
LguI GCTCTTC 1 cut(s) 462
Lsp1109I GCAGC 1 cut(s) 1005
MaeI CTAG 2 cut(s) 441, 854
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 2 cut(s) 898, 1111
MalI GATC 3 cut(s) 296, 336, 910
MboI GATC 3 cut(s) 294, 334, 908
MboII GAAGA 5 cut(s) 56, 94, 449, 576, 710
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 2 cut(s) 294, 334
MluCI AATT 7 cut(s) 74, 401, 510, 556, 838, 863, 987
Mly113I GGCGCC 1 cut(s) 160
MlyI GAGTC 3 cut(s) 455, 885, 974
MmeI TCCRAC 2 cut(s) 453, 485
MnlI CCTC 7 cut(s) 259, 296, 688, 902, 1036, 1114, 1178
MroI TCCGGA 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 3 cut(s) 236, 708, 1064
MslI CAYNNNNRTG 2 cut(s) 92, 606
MspA1I CMGCKG 1 cut(s) 414
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 2 cut(s) 346, 833
MspR9I CCNGG 2 cut(s) 637, 1095
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 957, 1157
MvaI CCWGG 2 cut(s) 637, 1095
MwoI GCNNNNNNNGC 2 cut(s) 166, 1057
NarI GGCGCC 1 cut(s) 160
NcoI CCATGG 2 cut(s) 18, 229
NdeII GATC 3 cut(s) 294, 334, 908
NlaIII CATG 5 cut(s) 22, 53, 233, 605, 965
NlaIV GGNNCC 5 cut(s) 161, 247, 350, 634, 889
NmuCI GTSAC 1 cut(s) 1111
PagI TCATGA 2 cut(s) 601, 961
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 2 cut(s) 957, 1157
PdmI GAANNNNTTC 1 cut(s) 661
PflMI CCANNNNNTGG 1 cut(s) 642
PfoI TCCNGGA 2 cut(s) 635, 1093
PkrI GCNGC 2 cut(s) 413, 995
PleI GAGTC 3 cut(s) 454, 884, 973
PluTI GGCGCC 1 cut(s) 163
PpsI GAGTC 3 cut(s) 454, 884, 973
Psp6I CCWGG 2 cut(s) 635, 1093
PspGI CCWGG 2 cut(s) 635, 1093
PspN4I GGNNCC 5 cut(s) 161, 247, 350, 634, 889
PspPI GGNCC 3 cut(s) 245, 633, 972
PsuI RGATCY 2 cut(s) 294, 334
RsaI GTAC 2 cut(s) 9, 1002
RsaNI GTAC 2 cut(s) 8, 1001
RseI CAYNNNNRTG 2 cut(s) 92, 606
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 236, 708, 1064
SatI GCNGC 2 cut(s) 412, 994
Sau3AI GATC 3 cut(s) 294, 334, 908
Sau96I GGNCC 3 cut(s) 245, 633, 972
SchI GAGTC 3 cut(s) 455, 885, 974
ScrFI CCNGG 2 cut(s) 637, 1095
SfcI CTRYAG 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 161
SinI GGWCC 2 cut(s) 633, 972
SmiMI CAYNNNNRTG 2 cut(s) 92, 606
SmlI CTYRAG 4 cut(s) 235, 298, 320, 916
SmoI CTYRAG 4 cut(s) 235, 298, 320, 916
SpeI ACTAGT 1 cut(s) 440
Sse9I AATT 7 cut(s) 74, 401, 510, 556, 838, 863, 987
SsiI CCGC 5 cut(s) 240, 409, 412, 591, 806
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 2 cut(s) 441, 854
StyD4I CCNGG 2 cut(s) 635, 1093
StyI CCWWGG 3 cut(s) 18, 229, 871
TaaI ACNGT 5 cut(s) 94, 628, 693, 904, 934
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 1 cut(s) 907
TasI AATT 7 cut(s) 74, 401, 510, 556, 838, 863, 987
TauI GCSGC 1 cut(s) 414
Tru1I TTAA 3 cut(s) 236, 708, 1064
Tru9I TTAA 3 cut(s) 236, 708, 1064
TscAI CASTG 5 cut(s) 40, 99, 146, 937, 1201
TseFI GTSAC 1 cut(s) 1111
TseI GCWGC 1 cut(s) 993
Tsp45I GTSAC 1 cut(s) 1111
TspDTI ATGAA 8 cut(s) 414, 549, 618, 624, 710, 950, 959, 1164
TspRI CASTG 5 cut(s) 40, 99, 146, 937, 1201
Van91I CCANNNNNTGG 1 cut(s) 642
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 633, 972
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 2 cut(s) 441, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.