Prupe.1G170000_v2.0.a1

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13991365 .. 13992617
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G170000.1

Sequence Viewer

Length: 1188 bp
ATGAAGAAAACCAAACTGTTGCACAGCCACCCACCAAATGAGCATGAAGAAGATGAAGAAGAAGAAAGAAGAAGAAAGGACATGAAGCCCTACATCCTACAACTGCCAAACCACCTGACTGTTGAGATCTTCTGCAAAATCCCAATTAAAACCCTCATCCAATGCAGGTGTGTGTGCAAGTCTTGGCGTTGTTCGCTCTCAGACCCCGAATTCACCAAATACCTCTTCTCAGAAACACCTACTTGCCTTTTGCTCCAAAACAGCAGCTCCAGAAACCCCAACTCGAGTGGCCTCTTCTTGATCGACCTCGACAACGCTTCTAACAGGAATGACGTTGTCATTAAGCTTCATAAAGACCCTAATGTCCCAACTCTTGGTGTACAAATCGTGGGTTCCTGCAATGGCTTCCTCTGCCTATACGACAGGATCAACTATGGCCGATTTTACGTCTCCAACCCTGTTTTGGGTGAGTCTTTAACTCTTCCAAAACTTCCCAAGGAAATTGATTTTCCATTTCTTTCGGGGTTTGGGTTTTGTCCCATCAATGATGTCAATGCTTATAAGTTAGTTCTGGTTTCATCTCCTAGTGAAGGATGTAACCAAGGGGAGATAATGGTTTTGACTGTTGGCTCTGGGGGTTGGAGAAATGTTGGGAATTTTGTGTACCCTTTTCCTTTTGGGTACCAATCATGTGGGATTTTCCATAATGGTTTTCTTCATTGGATTTCTCAGTGCAGTGACAACTCTGTTTTGATTTGTGCCTTTGATCTTGAAAGTGAGCGCTTCCAAGAGTTGCCGCTGCCGCCTTGGTCTTTGGAAAAACCTCTTATCAGCCTTGGGGTCCTGAAAGGTTGGCTCTCCATATTTGTCCCCTCCAAAGGTAATGTCAATGTTTGGGTGATGAAGGATTATGGTGTGCAGGAGTCTTGGACCAAGGAGCTTGTCCTTAAACAGGTGATTGGTTACTCAGCTAGCTCTTCTGCTACCCAAGTATTGAAATTTACCAAGAAGGGAAAAGTCTTGTTCTTTCAAAAGTATAAACTGAGGGTTTATACTCCTGGAAAAAGGGGCTCCATCCCGGCAGCGGTTGATGGGATACCATTAATGGTTGAAGCTTTTGTGCATATTCCAAGCTTTGTTTCTCTTAACGATGCCATCATGGATTTGAGTTCAAAGGTAAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

396

Amino Acids

44.51

Weight (kDa)

8.46

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AarI CACCTGC 1 cut(s) 156
AasI GACNNNNNNGTC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 681
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 3 cut(s) 797, 803, 1085
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 3 cut(s) 209, 655, 998
AfaI GTAC 3 cut(s) 381, 665, 683
AfeI AGCGCT 1 cut(s) 782
AfiI CCNNNNNNNGG 7 cut(s) 374, 463, 464, 590, 878, 952, 1084
AgsI TTSAA 5 cut(s) 773, 997, 1031, 1112, 1173
AjnI CCWGG 1 cut(s) 1057
AjuI GAANNNNNNNTTGG 4 cut(s) 209, 241, 1123, 1155
AluBI AGCT 7 cut(s) 267, 346, 940, 971, 975, 1115, 1134
AluI AGCT 7 cut(s) 267, 346, 940, 971, 975, 1115, 1134
Alw26I GTCTC 1 cut(s) 454
AlwI GGATC 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 782
AoxI GGCC 2 cut(s) 289, 436
ApeKI GCWGC 3 cut(s) 264, 799, 1082
ApoI RAATTY 3 cut(s) 209, 655, 998
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AseI ATTAAT 1 cut(s) 1103
Asp718I GGTACC 1 cut(s) 681
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 2 cut(s) 841, 930
AsuC2I CCSGG 1 cut(s) 1079
AsuHPI GGTGA 4 cut(s) 205, 479, 910, 967
AsuNHI GCTAGC 1 cut(s) 971
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 841, 930
BanI GGYRCC 1 cut(s) 681
BanII GRGCYC 1 cut(s) 1073
BbvI GCAGC 3 cut(s) 276, 786, 1094
BccI CCATC 4 cut(s) 548, 1082, 1085, 1163
BciT130I CCWGG 1 cut(s) 1059
BciVI GTATCC 1 cut(s) 1089
BcnI CCSGG 1 cut(s) 1079
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 2 cut(s) 585, 972
BfoI RGCGCY 1 cut(s) 784
BfuAI ACCTGC 1 cut(s) 156
BfuI GTATCC 1 cut(s) 1089
BglII AGATCT 1 cut(s) 126
BisI GCNGC 5 cut(s) 265, 797, 800, 803, 1083
BlsI GCNGC 5 cut(s) 266, 798, 801, 804, 1084
Bme1390I CCNGG 2 cut(s) 1059, 1079
Bme18I GGWCC 2 cut(s) 841, 930
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 841, 930
BmiI GGNNCC 4 cut(s) 394, 683, 842, 1072
BmrFI CCNGG 2 cut(s) 1059, 1079
BmsI GCATC 1 cut(s) 1141
BmtI GCTAGC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 1079
BsaJI CCNNGG 5 cut(s) 495, 601, 806, 835, 933
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 7 cut(s) 374, 463, 464, 590, 878, 952, 1084
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 1059
BseDI CCNNGG 5 cut(s) 495, 601, 806, 835, 933
BseGI GGATG 4 cut(s) 93, 156, 599, 1074
BseLI CCNNNNNNNGG 7 cut(s) 374, 463, 464, 590, 878, 952, 1084
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 5 cut(s) 213, 243, 743, 981, 1034
BseXI GCAGC 3 cut(s) 276, 786, 1094
BsgI GTGCAG 2 cut(s) 754, 938
BshFI GGCC 2 cut(s) 291, 438
BshNI GGYRCC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 1 cut(s) 1079
BslFI GGGAC 3 cut(s) 350, 522, 854
BslI CCNNNNNNNGG 7 cut(s) 374, 463, 464, 590, 878, 952, 1084
BsmAI GTCTC 1 cut(s) 454
BsmBI CGTCTC 1 cut(s) 454
BsmFI GGGAC 3 cut(s) 350, 522, 854
BsnI GGCC 2 cut(s) 291, 438
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 4 cut(s) 126, 300, 426, 766
BspACI CCGC 3 cut(s) 797, 803, 1085
BspANI GGCC 2 cut(s) 291, 438
BspCNI CTCAG 5 cut(s) 212, 242, 742, 980, 1035
BspLI GGNNCC 4 cut(s) 394, 683, 842, 1072
BspMI ACCTGC 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 975
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 982
BspT107I GGYRCC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 406
BsrGI TGTACA 1 cut(s) 379
BssECI CCNNGG 5 cut(s) 495, 601, 806, 835, 933
BssMI GATC 4 cut(s) 126, 300, 426, 766
BssT1I CCWWGG 5 cut(s) 495, 601, 806, 835, 933
Bst2UI CCWGG 1 cut(s) 1059
Bst4CI ACNGT 3 cut(s) 18, 121, 625
Bst6I CTCTTC 4 cut(s) 230, 299, 486, 982
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 973
BstDEI CTNAG 5 cut(s) 199, 229, 729, 967, 1043
BstENI CCTNNNNNAGG 2 cut(s) 588, 950
BstF5I GGATG 4 cut(s) 93, 156, 599, 1074
BstH2I RGCGCY 1 cut(s) 784
BstHHI GCGC 1 cut(s) 783
BstKTI GATC 4 cut(s) 129, 303, 429, 769
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 4 cut(s) 126, 300, 426, 766
BstMWI GCNNNNNNNGC 3 cut(s) 193, 411, 802
BstNI CCWGG 1 cut(s) 1059
BstSCI CCNGG 2 cut(s) 1057, 1077
BstV1I GCAGC 3 cut(s) 276, 786, 1094
BstX2I RGATCY 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 692
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 1089
BsuRI GGCC 2 cut(s) 291, 438
BtsCI GGATG 4 cut(s) 93, 156, 599, 1074
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 737, 742
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 973
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 2 cut(s) 841, 930
Csp6I GTAC 3 cut(s) 380, 664, 682
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 4 cut(s) 44, 82, 690, 1159
CviQI GTAC 3 cut(s) 380, 664, 682
DdeI CTNAG 5 cut(s) 199, 229, 729, 967, 1043
DpnI GATC 4 cut(s) 128, 302, 428, 768
DpnII GATC 4 cut(s) 126, 300, 426, 766
DrdI GACNNNNNNGTC 1 cut(s) 362
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 436
Eam1104I CTCTTC 4 cut(s) 230, 299, 486, 982
EarI CTCTTC 4 cut(s) 230, 299, 486, 982
Eco130I CCWWGG 5 cut(s) 495, 601, 806, 835, 933
Eco24I GRGCYC 1 cut(s) 1073
Eco47I GGWCC 2 cut(s) 841, 930
Eco47III AGCGCT 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 283
EcoNI CCTNNNNNAGG 2 cut(s) 588, 950
EcoO109I RGGNCCY 1 cut(s) 841
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 1057
EcoT14I CCWWGG 5 cut(s) 495, 601, 806, 835, 933
EcoT38I GRGCYC 1 cut(s) 1073
ErhI CCWWGG 5 cut(s) 495, 601, 806, 835, 933
Esp3I CGTCTC 1 cut(s) 454
FaeI CATG 4 cut(s) 47, 85, 693, 1162
FaqI GGGAC 3 cut(s) 350, 522, 854
FatI CATG 4 cut(s) 43, 81, 689, 1158
Fnu4HI GCNGC 5 cut(s) 265, 797, 800, 803, 1083
FokI GGATG 4 cut(s) 80, 143, 606, 1061
FriOI GRGCYC 1 cut(s) 1073
Fsp4HI GCNGC 5 cut(s) 265, 797, 800, 803, 1083
FspBI CTAG 2 cut(s) 585, 972
GlaI GCGC 1 cut(s) 782
GluI GCNGC 5 cut(s) 265, 797, 800, 803, 1083
GsuI CTGGAG 1 cut(s) 253
HaeII RGCGCY 1 cut(s) 784
HaeIII GGCC 2 cut(s) 291, 438
HapII CCGG 1 cut(s) 1079
HhaI GCGC 1 cut(s) 783
Hin1II CATG 4 cut(s) 47, 85, 693, 1162
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HindIII AAGCTT 3 cut(s) 344, 1113, 1132
HinfI GANTC 2 cut(s) 470, 923
HpaII CCGG 1 cut(s) 1079
HphI GGTGA 4 cut(s) 205, 479, 910, 967
Hpy166II GTNNAC 2 cut(s) 380, 664
Hpy188I TCNGA 2 cut(s) 202, 232
Hpy188III TCNNGA 4 cut(s) 270, 298, 770, 844
Hpy8I GTNNAC 2 cut(s) 380, 664
HpyAV CCTTC 3 cut(s) 584, 898, 1003
HpyCH4III ACNGT 3 cut(s) 18, 121, 625
HpyCH4IV ACGT 2 cut(s) 333, 447
HpyCH4V TGCA 8 cut(s) 22, 135, 165, 177, 399, 735, 919, 1123
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 411, 802
HpyF3I CTNAG 5 cut(s) 199, 229, 729, 967, 1043
HpySE526I ACGT 2 cut(s) 333, 447
Hsp92II CATG 4 cut(s) 47, 85, 693, 1162
HspAI GCGC 1 cut(s) 781
KpnI GGTACC 1 cut(s) 685
Kzo9I GATC 4 cut(s) 126, 300, 426, 766
LguI GCTCTTC 1 cut(s) 982
LmnI GCTCC 4 cut(s) 258, 272, 937, 1076
Lsp1109I GCAGC 3 cut(s) 276, 786, 1094
LweI GCATC 1 cut(s) 1141
MaeI CTAG 2 cut(s) 585, 972
MaeII ACGT 2 cut(s) 333, 447
MaeIII GTNAC 3 cut(s) 596, 737, 962
MalI GATC 4 cut(s) 128, 302, 428, 768
MboI GATC 4 cut(s) 126, 300, 426, 766
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 1073
MluCI AATT 5 cut(s) 144, 209, 501, 655, 998
MlyI GAGTC 2 cut(s) 479, 932
MmeI TCCRAC 2 cut(s) 477, 620
MnlI CCTC 8 cut(s) 164, 233, 302, 317, 419, 834, 883, 1038
MseI TTAA 7 cut(s) 147, 342, 476, 948, 1103, 1146, 1186
MspA1I CMGCKG 2 cut(s) 799, 1085
MspI CCGG 1 cut(s) 1079
MspR9I CCNGG 2 cut(s) 1059, 1079
MvaI CCWGG 1 cut(s) 1059
MwoI GCNNNNNNNGC 3 cut(s) 193, 411, 802
NciI CCSGG 1 cut(s) 1079
NdeII GATC 4 cut(s) 126, 300, 426, 766
NheI GCTAGC 1 cut(s) 971
NlaIII CATG 4 cut(s) 47, 85, 693, 1162
NlaIV GGNNCC 4 cut(s) 394, 683, 842, 1072
NmuCI GTSAC 1 cut(s) 737
PaeR7I CTCGAG 1 cut(s) 283
PaqCI CACCTGC 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 982
PflFI GACNNNGTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 1057
PkrI GCNGC 5 cut(s) 266, 798, 801, 804, 1084
PleI GAGTC 2 cut(s) 478, 931
PpsI GAGTC 2 cut(s) 478, 931
PpuMI RGGWCCY 1 cut(s) 841
PshBI ATTAAT 1 cut(s) 1103
PsiI TTATAA 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 841
Psp6I CCWGG 1 cut(s) 1057
PspGI CCWGG 1 cut(s) 1057
PspN4I GGNNCC 4 cut(s) 394, 683, 842, 1072
PspPI GGNCC 2 cut(s) 841, 930
PspPPI RGGWCCY 1 cut(s) 841
PspXI VCTCGAGB 1 cut(s) 283
PsuI RGATCY 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 335
RsaI GTAC 3 cut(s) 381, 665, 683
RsaNI GTAC 3 cut(s) 380, 664, 682
SapI GCTCTTC 1 cut(s) 982
SaqAI TTAA 7 cut(s) 147, 342, 476, 948, 1103, 1146, 1186
SatI GCNGC 5 cut(s) 265, 797, 800, 803, 1083
Sau3AI GATC 4 cut(s) 126, 300, 426, 766
Sau96I GGNCC 2 cut(s) 841, 930
SchI GAGTC 2 cut(s) 479, 932
ScrFI CCNGG 2 cut(s) 1059, 1079
SduI GDGCHC 1 cut(s) 1073
SfaNI GCATC 1 cut(s) 1141
Sfr274I CTCGAG 1 cut(s) 283
SinI GGWCC 2 cut(s) 841, 930
SlaI CTCGAG 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 5 cut(s) 144, 209, 501, 655, 998
SsiI CCGC 3 cut(s) 797, 803, 1085
SspI AATATT 1 cut(s) 1184
SspMI CTAG 2 cut(s) 585, 972
StyD4I CCNGG 2 cut(s) 1057, 1077
StyI CCWWGG 5 cut(s) 495, 601, 806, 835, 933
TaaI ACNGT 3 cut(s) 18, 121, 625
TaiI ACGT 2 cut(s) 336, 450
TaqI TCGA 3 cut(s) 284, 303, 309
TasI AATT 5 cut(s) 144, 209, 501, 655, 998
TatI WGTACW 1 cut(s) 379
TauI GCSGC 2 cut(s) 799, 805
Tru1I TTAA 7 cut(s) 147, 342, 476, 948, 1103, 1146, 1186
Tru9I TTAA 7 cut(s) 147, 342, 476, 948, 1103, 1146, 1186
TscAI CASTG 2 cut(s) 737, 742
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 3 cut(s) 264, 799, 1082
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 8 cut(s) 17, 60, 69, 98, 338, 567, 707, 917
TspRI CASTG 2 cut(s) 737, 742
Tth111I GACNNNGTC 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 841, 930
VspI ATTAAT 1 cut(s) 1103
XagI CCTNNNNNAGG 2 cut(s) 588, 950
XapI RAATTY 3 cut(s) 209, 655, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 283
XspI CTAG 2 cut(s) 585, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.