Rmu_sc0001755.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001755.1
OG0000430
Physical Location & Seq
Reverse (-)
55281 .. 57617
2337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001755.1_g000011.1.cds

Sequence Viewer

Length: 651 bp
atgcagcatccagaggaagtagctgaaacatctgatataagaataccagcatggacaactagtgttgtgggatggggagagaacgacgaaagcgaggtagttgagattccaagaggccagcctaccccatgcctgccactcccaaaggaccttaaacatgtaagtgcagctacagcttccacgctactggatatgattagtggcttgaatgcccttctattgcagaagtgcatggtaggaaaggatgagatccaaaggcttaggaaggagaatgaaaaactccgtgcaagtgtaatgctgctttcgggaaggccagatgatggtgaagataattttcctgggtcgagcaccggcgacgtccaggaggccatcgaagacgtcgcgtggtcgtcgatgtcagcgccggccgagtttgggcgagctgcagcagaatccgagcaaaagtcgaccagcaccggcgaggcagttggacgcggtcgagctcaccggcgagttgcacggaatctgggcattgcagcagttggacgcggtcgagctcacctgcgagttgcagcggaacctgggcgagaggtcgaacgtcgccggagttggagatccgggagcgatgagagagagagagagacggagagagagcagatcggagaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

23.65

Weight (kDa)

5.24

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 549
AatII GACGTC 2 cut(s) 360, 381
Acc36I ACCTGC 1 cut(s) 549
AccB7I CCANNNNNTGG 1 cut(s) 320
AccI GTMKAC 1 cut(s) 446
AccII CGCG 3 cut(s) 383, 474, 528
AciI CCGC 3 cut(s) 474, 528, 554
AclWI GGATC 2 cut(s) 244, 588
AcoI YGGCCR 1 cut(s) 405
AcyI GRCGYC 2 cut(s) 357, 378
AfiI CCNNNNNNNGG 2 cut(s) 320, 414
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 208
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 3 cut(s) 337, 360, 559
AluBI AGCT 6 cut(s) 23, 170, 176, 422, 482, 536
AluI AGCT 6 cut(s) 23, 170, 176, 422, 482, 536
Alw21I GWGCWC 3 cut(s) 350, 484, 538
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 2 cut(s) 244, 588
AoxI GGCC 4 cut(s) 115, 311, 366, 405
ApeKI GCWGC 7 cut(s) 4, 167, 298, 422, 425, 515, 551
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 3 cut(s) 335, 476, 530
AvaII GGWCC 1 cut(s) 148
BanII GRGCYC 2 cut(s) 484, 538
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 350, 484, 538
BbvI GCAGC 7 cut(s) 16, 179, 285, 409, 437, 527, 563
BccI CCATC 3 cut(s) 66, 314, 377
BciT130I CCWGG 3 cut(s) 339, 362, 561
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 1 cut(s) 614
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
BfmI CTRYAG 2 cut(s) 171, 423
BfoI RGCGCY 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 549
BisI GCNGC 7 cut(s) 5, 168, 299, 423, 426, 516, 552
BlsI GCNGC 7 cut(s) 6, 169, 300, 424, 427, 517, 553
Bme1390I CCNGG 4 cut(s) 339, 362, 561, 598
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 4 cut(s) 339, 362, 561, 598
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 598
BsaHI GRCGYC 2 cut(s) 357, 378
BsaJI CCNNGG 2 cut(s) 338, 560
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 414
Bse118I RCCGGY 4 cut(s) 350, 403, 455, 486
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 3 cut(s) 339, 362, 561
BseDI CCNNGG 2 cut(s) 338, 560
BseGI GGATG 3 cut(s) 7, 77, 250
BseLI CCNNNNNNNGG 2 cut(s) 320, 414
BseMI GCAATG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 192
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 7 cut(s) 16, 179, 285, 409, 437, 527, 563
BsgI GTGCAG 1 cut(s) 186
Bsh1236I CGCG 3 cut(s) 383, 474, 528
Bsh1285I CGRYCG 3 cut(s) 408, 478, 532
BshFI GGCC 4 cut(s) 117, 313, 368, 407
BsiEI CGRYCG 3 cut(s) 408, 478, 532
BsiHKAI GWGCWC 3 cut(s) 350, 484, 538
BsiSI CCGG 6 cut(s) 351, 404, 456, 487, 583, 597
BslI CCNNNNNNNGG 2 cut(s) 320, 414
BsmAI GTCTC 1 cut(s) 614
BsmBI CGTCTC 1 cut(s) 614
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 4 cut(s) 117, 313, 368, 407
Bsp1286I GDGCHC 3 cut(s) 350, 484, 538
Bsp143I GATC 3 cut(s) 249, 593, 636
BspACI CCGC 3 cut(s) 474, 528, 554
BspANI GGCC 4 cut(s) 117, 313, 368, 407
BspFNI CGCG 3 cut(s) 383, 474, 528
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 244, 588
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 4 cut(s) 350, 403, 455, 486
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 4 cut(s) 350, 403, 455, 486
BssECI CCNNGG 2 cut(s) 338, 560
BssMI GATC 3 cut(s) 249, 593, 636
BssNI GRCGYC 2 cut(s) 357, 378
Bst2UI CCWGG 3 cut(s) 339, 362, 561
BstACI GRCGYC 2 cut(s) 357, 378
BstC8I GCNNGC 4 cut(s) 119, 134, 405, 420
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 3 cut(s) 7, 77, 250
BstFNI CGCG 3 cut(s) 383, 474, 528
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 3 cut(s) 252, 596, 639
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 249, 593, 636
BstMCI CGRYCG 3 cut(s) 408, 478, 532
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 3 cut(s) 339, 362, 561
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 4 cut(s) 337, 360, 559, 596
BstSFI CTRYAG 2 cut(s) 171, 423
BstUI CGCG 3 cut(s) 383, 474, 528
BstV1I GCAGC 7 cut(s) 16, 179, 285, 409, 437, 527, 563
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 2 cut(s) 249, 593
BstXI CCANNNNNNTGG 1 cut(s) 187
BstYI RGATCY 2 cut(s) 249, 593
BstZI CGGCCG 1 cut(s) 405
BsuRI GGCC 4 cut(s) 117, 313, 368, 407
BtgZI GCGATG 1 cut(s) 618
BtsCI GGATG 3 cut(s) 7, 77, 250
BveI ACCTGC 1 cut(s) 549
Cac8I GCNNGC 4 cut(s) 119, 134, 405, 420
CfoI GCGC 1 cut(s) 403
Cfr10I RCCGGY 4 cut(s) 350, 403, 455, 486
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 2 cut(s) 480, 534
CviAII CATG 4 cut(s) 51, 129, 158, 232
DdeI CTNAG 1 cut(s) 260
DpnI GATC 3 cut(s) 251, 595, 638
DpnII GATC 3 cut(s) 249, 593, 636
EaeI YGGCCR 1 cut(s) 405
EagI CGGCCG 1 cut(s) 405
Ecl136II GAGCTC 2 cut(s) 482, 536
EclXI CGGCCG 1 cut(s) 405
Eco24I GRGCYC 2 cut(s) 484, 538
Eco47I GGWCC 1 cut(s) 148
Eco52I CGGCCG 1 cut(s) 405
Eco53kI GAGCTC 2 cut(s) 482, 536
EcoICRI GAGCTC 2 cut(s) 482, 536
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 3 cut(s) 337, 360, 559
EcoT38I GRGCYC 2 cut(s) 484, 538
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 4 cut(s) 54, 132, 161, 235
FaiI YATR 6 cut(s) 38, 52, 130, 159, 194, 233
FatI CATG 4 cut(s) 50, 128, 157, 231
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 7 cut(s) 5, 168, 299, 423, 426, 516, 552
FokI GGATG 2 cut(s) 84, 257
FriOI GRGCYC 2 cut(s) 484, 538
Fsp4HI GCNGC 7 cut(s) 5, 168, 299, 423, 426, 516, 552
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 402
GluI GCNGC 7 cut(s) 5, 168, 299, 423, 426, 516, 552
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 4 cut(s) 117, 313, 368, 407
HapII CCGG 6 cut(s) 351, 404, 456, 487, 583, 597
HgaI GACGC 2 cut(s) 480, 534
HhaI GCGC 1 cut(s) 403
Hin1I GRCGYC 2 cut(s) 357, 378
Hin1II CATG 4 cut(s) 54, 132, 161, 235
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 3 cut(s) 106, 431, 502
HpaII CCGG 6 cut(s) 351, 404, 456, 487, 583, 597
HphI GGTGA 3 cut(s) 335, 476, 530
Hpy166II GTNNAC 1 cut(s) 447
Hpy188I TCNGA 3 cut(s) 34, 436, 641
Hpy188III TCNNGA 2 cut(s) 11, 306
Hpy8I GTNNAC 1 cut(s) 447
Hpy99I CGWCG 5 cut(s) 89, 359, 383, 394, 582
HpyAV CCTTC 3 cut(s) 224, 259, 303
HpyCH4IV ACGT 3 cut(s) 357, 378, 577
HpyCH4V TGCA 9 cut(s) 4, 167, 223, 231, 287, 425, 497, 515, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 260
HpySE526I ACGT 3 cut(s) 357, 378, 577
Hsp92I GRCGYC 2 cut(s) 357, 378
Hsp92II CATG 4 cut(s) 54, 132, 161, 235
HspAI GCGC 1 cut(s) 401
KroI GCCGGC 1 cut(s) 403
KroNI GCCGGC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 249, 593, 636
LmnI GCTCC 1 cut(s) 600
Lsp1109I GCAGC 7 cut(s) 16, 179, 285, 409, 437, 527, 563
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 60
MaeII ACGT 3 cut(s) 357, 378, 577
MalI GATC 3 cut(s) 251, 595, 638
MboI GATC 3 cut(s) 249, 593, 636
MboII GAAGA 2 cut(s) 338, 386
MflI RGATCY 2 cut(s) 249, 593
MhlI GDGCHC 3 cut(s) 350, 484, 538
MluCI AATT 1 cut(s) 331
MmeI TCCRAC 3 cut(s) 448, 502, 569
MnlI CCTC 7 cut(s) 7, 88, 107, 358, 454, 562, 637
MroNI GCCGGC 1 cut(s) 403
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 6 cut(s) 351, 404, 456, 487, 583, 597
MspR9I CCNGG 4 cut(s) 339, 362, 561, 598
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 3 cut(s) 339, 362, 561
MvnI CGCG 3 cut(s) 383, 474, 528
MwoI GCNNNNNNNGC 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 405
NciI CCSGG 1 cut(s) 598
NdeII GATC 3 cut(s) 249, 593, 636
NgoMIV GCCGGC 1 cut(s) 403
NlaIII CATG 4 cut(s) 54, 132, 161, 235
NlaIV GGNNCC 1 cut(s) 558
NmeAIII GCCGAG 1 cut(s) 433
NspI RCATGY 1 cut(s) 161
PaqCI CACCTGC 1 cut(s) 549
PciI ACATGT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 106, 431, 502
PflFI GACNNNGTC 2 cut(s) 474, 528
PflMI CCANNNNNTGG 1 cut(s) 320
PfoI TCCNGGA 2 cut(s) 360, 596
PkrI GCNGC 7 cut(s) 6, 169, 300, 424, 427, 517, 553
PpuMI RGGWCCY 1 cut(s) 148
PscI ACATGT 1 cut(s) 157
Psp124BI GAGCTC 2 cut(s) 484, 538
Psp5II RGGWCCY 1 cut(s) 148
Psp6I CCWGG 3 cut(s) 337, 360, 559
PspGI CCWGG 3 cut(s) 337, 360, 559
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 148
PspPPI RGGWCCY 1 cut(s) 148
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 2 cut(s) 249, 593
PsyI GACNNNGTC 2 cut(s) 474, 528
RseI CAYNNNNRTG 1 cut(s) 162
SacI GAGCTC 2 cut(s) 484, 538
SalI GTCGAC 1 cut(s) 445
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 7 cut(s) 5, 168, 299, 423, 426, 516, 552
Sau3AI GATC 3 cut(s) 249, 593, 636
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 4 cut(s) 339, 362, 561, 598
SduI GDGCHC 3 cut(s) 350, 484, 538
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 2 cut(s) 171, 423
SgrAI CRCCGGYG 3 cut(s) 350, 455, 486
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 1 cut(s) 331
SsiI CCGC 3 cut(s) 474, 528, 554
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 2 cut(s) 484, 538
StyD4I CCNGG 4 cut(s) 337, 360, 559, 596
TaiI ACGT 3 cut(s) 360, 381, 580
TaqI TCGA 7 cut(s) 344, 372, 392, 446, 478, 532, 573
TasI AATT 1 cut(s) 331
TfiI GAWTC 3 cut(s) 106, 431, 502
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 7 cut(s) 4, 167, 298, 422, 425, 515, 551
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 3 cut(s) 272, 514, 638
Tth111I GACNNNGTC 2 cut(s) 474, 528
Van91I CCANNNNNTGG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 148
XceI RCATGY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 60
ZraI GACGTC 2 cut(s) 358, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.