Prupe.1G168100_v2.0.a1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000430
Physical Location & Seq
Reverse (-)
13690424 .. 13692541
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G168100.1

Sequence Viewer

Length: 462 bp
ATGAAGAGAATTAAACTACCACCAACCAACAGAAACGGACCCCCAAAACAAGAAGTCGACGATGAAGAAGAAGAGCATGATCAGAAACCCTACCTTCTGCAATTGCCAGGGCACATAATAGCGGAGACCTTCTGCAAAATCCCAACAAAAACTCTCATCCAATGCAAGCGAGTTTGCAAGTCTTGGCGTTCTTGGCTCTCAGACCCTCAATTCACCAAAGAACTATTTTCACGAACGCCCACTTCCATTTTGATCACTGGATACTCGTGCCTGGGTCACTTCTTGGTCGACCTCGACAGGACCTGCAACCCAAACGACGTCGTGTTGAAGCTTTTCTGTATAAAAAAAAGTCTCCGAACTATAATAAGACCGACCATTATAGGCTCGTGCAATGGCTTCCTCTGTCACCACGAAGTCCATCTTGGGGGCGATCCATCATCTCCACATCTCCAATCCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

154

Amino Acids

17.44

Weight (kDa)

8.59

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 311
AccI GTMKAC 2 cut(s) 57, 288
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 424
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 2 cut(s) 106, 270
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 119, 356
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 38, 300
AsuHPI GGTGA 2 cut(s) 205, 398
AvaII GGWCC 2 cut(s) 38, 300
BaeGI GKGCMC 1 cut(s) 114
BauI CACGAG 2 cut(s) 265, 385
BccI CCATC 2 cut(s) 426, 442
BciT130I CCWGG 2 cut(s) 108, 272
BciVI GTATCC 1 cut(s) 254
BclI TGATCA 2 cut(s) 79, 252
BcoDI GTCTC 2 cut(s) 119, 356
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 108, 272
Bme18I GGWCC 2 cut(s) 38, 300
BmgT120I GGNCC 2 cut(s) 38, 300
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 2 cut(s) 108, 272
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 107, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 2 cut(s) 108, 272
BseDI CCNNGG 2 cut(s) 107, 271
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 424
BsmAI GTCTC 2 cut(s) 119, 356
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 79, 252, 430
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 425
BspQI GCTCTTC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 397
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 107, 271
BssMI GATC 3 cut(s) 79, 252, 430
BssNI GRCGYC 1 cut(s) 318
BssSI CACGAG 2 cut(s) 265, 385
Bst2BI CACGAG 2 cut(s) 265, 385
Bst2UI CCWGG 2 cut(s) 108, 272
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 3 cut(s) 82, 255, 433
BstMAI GTCTC 2 cut(s) 119, 356
BstMBI GATC 3 cut(s) 79, 252, 430
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 2 cut(s) 108, 272
BstSCI CCNGG 2 cut(s) 106, 270
BstSLI GKGCMC 1 cut(s) 114
BsuI GTATCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 38, 300
CviAII CATG 1 cut(s) 77
CviJI RGCY 4 cut(s) 196, 331, 384, 396
CviKI_1 RGCY 4 cut(s) 196, 331, 384, 396
DdeI CTNAG 1 cut(s) 199
DpnI GATC 3 cut(s) 81, 254, 432
DpnII GATC 3 cut(s) 79, 252, 430
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 38, 300
EcoO109I RGGNCCY 1 cut(s) 300
EcoRII CCWGG 2 cut(s) 106, 270
FaeI CATG 1 cut(s) 80
FaiI YATR 5 cut(s) 78, 116, 341, 362, 380
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 1 cut(s) 76
FbaI TGATCA 2 cut(s) 79, 252
FblI GTMKAC 2 cut(s) 57, 288
FokI GGATG 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 1 cut(s) 80
HincII GTYRAC 2 cut(s) 58, 289
HindII GTYRAC 2 cut(s) 58, 289
HindIII AAGCTT 1 cut(s) 329
HphI GGTGA 2 cut(s) 205, 398
Hpy166II GTNNAC 2 cut(s) 58, 289
Hpy188I TCNGA 3 cut(s) 84, 202, 356
Hpy188III TCNNGA 1 cut(s) 231
Hpy8I GTNNAC 2 cut(s) 58, 289
Hpy99I CGWCG 3 cut(s) 62, 320, 323
HpyAV CCTTC 2 cut(s) 104, 139
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 6 cut(s) 100, 135, 165, 177, 306, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 1 cut(s) 199
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 1 cut(s) 80
Ksp22I TGATCA 2 cut(s) 79, 252
Kzo9I GATC 3 cut(s) 79, 252, 430
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 93, 120, 243, 257, 283, 284, 316
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 2 cut(s) 275, 404
MalI GATC 3 cut(s) 81, 254, 432
MboI GATC 3 cut(s) 79, 252, 430
MboII GAAGA 4 cut(s) 16, 77, 80, 83
MfeI CAATTG 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 3 cut(s) 9, 101, 209
MnlI CCTC 3 cut(s) 216, 302, 410
MroXI GAANNNNTTC 1 cut(s) 332
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 108, 272
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 2 cut(s) 108, 272
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 3 cut(s) 79, 252, 430
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 275, 404
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 300
Psp5II RGGWCCY 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 106, 270
PspGI CCWGG 2 cut(s) 106, 270
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 38, 300
PspPPI RGGWCCY 1 cut(s) 300
PstNI CAGNNNCTG 1 cut(s) 303
SalI GTCGAC 2 cut(s) 56, 287
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 12
Sau3AI GATC 3 cut(s) 79, 252, 430
Sau96I GGNCC 2 cut(s) 38, 300
ScrFI CCNGG 2 cut(s) 108, 272
SduI GDGCHC 1 cut(s) 114
SetI ASST 6 cut(s) 96, 131, 294, 305, 321, 333
SinI GGWCC 2 cut(s) 38, 300
Sse9I AATT 3 cut(s) 9, 101, 209
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 106, 270
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 57, 288, 294
TaqII GACCGA 1 cut(s) 385
TasI AATT 3 cut(s) 9, 101, 209
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 2 cut(s) 275, 404
Tsp45I GTSAC 2 cut(s) 275, 404
TspDTI ATGAA 2 cut(s) 17, 78
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 2 cut(s) 38, 300
XmiI GTMKAC 2 cut(s) 57, 288
XmnI GAANNNNTTC 1 cut(s) 332
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.