FvH4_4g12931

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000430
Physical Location & Seq
Forward (+)
16585715 .. 16586940
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12931.t1

Sequence Viewer

Length: 756 bp
ATGTATGACAGGCTCAAATGCGGCCACCTTTACATTTCCAACCCCATGATCGGTGAGTCTTTGGCACTTACTATACCTATGGAAATTGACTGTCAGTTTGTTTGTGGGTTTGGGTTTTGTCCTACTAGTGAGGTTTATAAGGTAGTTGTGTTCACTTCCCCTAGTGAAGGAACTGATCATGAGGAGGTTAAGGTTTTAACTGTTGGGTCTGGGGTTTGGAGAAGTATTGGGAATTGTGTGTACCATTTTGGGTACCAACCTTATGGGGTTTATGTGAATGGCTTTCTTTATTGGATTGTTCAAACTAGTGAGGGTTGTGCTTCGATTTGTGCCTTTGACATTGAGAGAGAGTGCTTCCGAGAGCTGCCACTGCCGCCTTGTTCTCTGAAAAAATCTGTCATTAGCATTGGAGTCCTGGAAGGTTGGCTCTCTGTGTTTGTTGGGTCCAGAAGTAATATCAAGGTGTGGATGATGAAAGATTATGGGGTTGAGGAGTCTTGCACCAAACAGATTGTCATCAAAGCAAGCTCGTCCGGCATTCTTGCGGAAATGCTTGGTCACTCGCCTCTTGCTGCTCAAGTGTTGAAGTTTACCAAGAAGGGGCAAGTTTTGCTGCTGGATAATTATAGACTGCGTGTTTTTACTCCTGGAAAAAGAGGCTTTGTACCGCTTGAGATTGATGGGGTACCTTATACGGTTGAGGCATTTGTGCATACCCCTAGCTTTGTTTCGCTTGCCGATGCCATTAGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

252

Amino Acids

27.8

Weight (kDa)

6.22

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 9 - 165 2.7e-14 F-box associated beta propeller domain
FBA_3 PF08268 10 - 177 7.4e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
Acc65I GGTACC 2 cut(s) 252, 685
AccB1I GGYRCC 2 cut(s) 252, 685
AciI CCGC 4 cut(s) 21, 374, 545, 668
AcoI YGGCCR 1 cut(s) 22
AfaI GTAC 4 cut(s) 242, 254, 666, 687
AfiI CCNNNNNNNGG 3 cut(s) 50, 167, 600
AgsI TTSAA 2 cut(s) 302, 586
AhlI ACTAGT 2 cut(s) 125, 305
AjnI CCWGG 2 cut(s) 414, 646
AluBI AGCT 3 cut(s) 364, 528, 723
AluI AGCT 3 cut(s) 364, 528, 723
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 3 cut(s) 364, 572, 613
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 498, 530
Asp718I GGTACC 2 cut(s) 252, 685
AspS9I GGNCC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 444
BanI GGYRCC 2 cut(s) 252, 685
BbvI GCAGC 3 cut(s) 351, 559, 600
BccI CCATC 1 cut(s) 674
BciT130I CCWGG 2 cut(s) 416, 648
BclI TGATCA 1 cut(s) 175
BcuI ACTAGT 2 cut(s) 125, 305
BfaI CTAG 4 cut(s) 126, 162, 306, 720
BisI GCNGC 5 cut(s) 22, 365, 374, 573, 614
BlsI GCNGC 5 cut(s) 23, 366, 375, 574, 615
Bme1390I CCNGG 2 cut(s) 416, 648
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 444
BmiI GGNNCC 3 cut(s) 254, 445, 687
BmrFI CCNGG 2 cut(s) 416, 648
BmsI GCATC 1 cut(s) 730
BpuEI CTTGAG 2 cut(s) 561, 692
BsaBI GATNNNNATC 1 cut(s) 515
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 167, 600
Bse8I GATNNNNATC 1 cut(s) 515
BseBI CCWGG 2 cut(s) 416, 648
BseGI GGATG 1 cut(s) 474
BseJI GATNNNNATC 1 cut(s) 515
BseLI CCNNNNNNNGG 3 cut(s) 50, 167, 600
BseRI GAGGAG 2 cut(s) 197, 506
BseXI GCAGC 3 cut(s) 351, 559, 600
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 2 cut(s) 252, 685
BsiSI CCGG 1 cut(s) 534
BslI CCNNNNNNNGG 3 cut(s) 50, 167, 600
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 48, 175
BspACI CCGC 4 cut(s) 21, 374, 545, 668
BspANI GGCC 1 cut(s) 24
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 3 cut(s) 254, 445, 687
BspT107I GGYRCC 2 cut(s) 252, 685
BssMI GATC 2 cut(s) 48, 175
Bst2UI CCWGG 2 cut(s) 416, 648
Bst4CI ACNGT 3 cut(s) 92, 202, 697
BstAPI GCANNNNNTGC 1 cut(s) 610
BstC8I GCNNGC 2 cut(s) 526, 735
BstENI CCTNNNNNAGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 474
BstKTI GATC 2 cut(s) 51, 178
BstMBI GATC 2 cut(s) 48, 175
BstMWI GCNNNNNNNGC 4 cut(s) 370, 373, 534, 610
BstNI CCWGG 2 cut(s) 416, 648
BstSCI CCNGG 2 cut(s) 414, 646
BstV1I GCAGC 3 cut(s) 351, 559, 600
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 2 cut(s) 526, 735
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 444
Csp6I GTAC 4 cut(s) 241, 253, 665, 686
CviAII CATG 2 cut(s) 46, 179
CviJI RGCY 8 cut(s) 13, 24, 282, 364, 427, 528, 660, 723
CviKI_1 RGCY 8 cut(s) 13, 24, 282, 364, 427, 528, 660, 723
CviQI GTAC 4 cut(s) 241, 253, 665, 686
DpnI GATC 2 cut(s) 50, 177
DpnII GATC 2 cut(s) 48, 175
EaeI YGGCCR 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoRII CCWGG 2 cut(s) 414, 646
FaeI CATG 2 cut(s) 49, 182
FatI CATG 2 cut(s) 45, 178
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 5 cut(s) 22, 365, 374, 573, 614
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 22, 365, 374, 573, 614
FspBI CTAG 4 cut(s) 126, 162, 306, 720
GluI GCNGC 5 cut(s) 22, 365, 374, 573, 614
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 534
Hin1II CATG 2 cut(s) 49, 182
HinfI GANTC 3 cut(s) 56, 411, 494
HpaII CCGG 1 cut(s) 534
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 3 cut(s) 153, 241, 591
Hpy188I TCNGA 2 cut(s) 359, 387
Hpy188III TCNNGA 2 cut(s) 179, 447
Hpy8I GTNNAC 3 cut(s) 153, 241, 591
HpyAV CCTTC 3 cut(s) 161, 413, 592
HpyCH4III ACNGT 3 cut(s) 92, 202, 697
HpyCH4V TGCA 2 cut(s) 501, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 370, 373, 534, 610
Hsp92II CATG 2 cut(s) 49, 182
KpnI GGTACC 2 cut(s) 256, 689
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 48, 175
LpnPI CCDG 8 cut(s) 195, 401, 428, 460, 547, 602, 633, 660
Lsp1109I GCAGC 3 cut(s) 351, 559, 600
LweI GCATC 1 cut(s) 730
MaeI CTAG 4 cut(s) 126, 162, 306, 720
MaeIII GTNAC 1 cut(s) 557
MalI GATC 2 cut(s) 50, 177
MboI GATC 2 cut(s) 48, 175
MluCI AATT 3 cut(s) 84, 232, 622
MlyI GAGTC 3 cut(s) 65, 420, 503
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 8 cut(s) 124, 175, 178, 304, 484, 576, 650, 694
MseI TTAA 2 cut(s) 189, 197
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 2 cut(s) 416, 648
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 2 cut(s) 416, 648
MwoI GCNNNNNNNGC 4 cut(s) 370, 373, 534, 610
NdeII GATC 2 cut(s) 48, 175
NlaIII CATG 2 cut(s) 49, 182
NlaIV GGNNCC 3 cut(s) 254, 445, 687
NmuCI GTSAC 1 cut(s) 557
PagI TCATGA 1 cut(s) 178
PctI GAATGC 1 cut(s) 537
PfoI TCCNGGA 2 cut(s) 414, 646
PkrI GCNGC 5 cut(s) 23, 366, 375, 574, 615
PleI GAGTC 3 cut(s) 64, 419, 502
PpsI GAGTC 3 cut(s) 64, 419, 502
PsiI TTATAA 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 414, 646
PspGI CCWGG 2 cut(s) 414, 646
PspN4I GGNNCC 3 cut(s) 254, 445, 687
PspPI GGNCC 1 cut(s) 444
RsaI GTAC 4 cut(s) 242, 254, 666, 687
RsaNI GTAC 4 cut(s) 241, 253, 665, 686
SaqAI TTAA 2 cut(s) 189, 197
SatI GCNGC 5 cut(s) 22, 365, 374, 573, 614
Sau3AI GATC 2 cut(s) 48, 175
Sau96I GGNCC 1 cut(s) 444
SchI GAGTC 3 cut(s) 65, 420, 503
ScrFI CCNGG 2 cut(s) 416, 648
SfaNI GCATC 1 cut(s) 730
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 576, 671
SmoI CTYRAG 2 cut(s) 576, 671
SpeI ACTAGT 2 cut(s) 125, 305
Sse9I AATT 3 cut(s) 84, 232, 622
SsiI CCGC 4 cut(s) 21, 374, 545, 668
SspMI CTAG 4 cut(s) 126, 162, 306, 720
StyD4I CCNGG 2 cut(s) 414, 646
TaaI ACNGT 3 cut(s) 92, 202, 697
TaqI TCGA 1 cut(s) 323
TasI AATT 3 cut(s) 84, 232, 622
TauI GCSGC 2 cut(s) 24, 376
Tru1I TTAA 2 cut(s) 189, 197
Tru9I TTAA 2 cut(s) 189, 197
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 3 cut(s) 364, 572, 613
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 1 cut(s) 488
TspRI CASTG 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 444
XagI CCTNNNNNAGG 1 cut(s) 165
XspI CTAG 4 cut(s) 126, 162, 306, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.