Rmu_sc0010735.1_g000006

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010735.1
OG0000430
Physical Location & Seq
Reverse (-)
29346 .. 30867
1522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010735.1_g000006.1.cds

Sequence Viewer

Length: 1095 bp
atgtatatcgggcttgatgattttagaccagtgagagcagaagaagaaaggcatgacgagaaaccttgcaacattctgcaattgccagatcacataactcaggacagaagctgtcgaatcccattgaaaactctcatccaatgcaagtttgtgtgcaagtcttggcatcgttctctttctaaccccgacttcacaaaaaccctagtttattcacgagcgcctacttgccattttctcctagaccttgacaaaaataaacacgtcctagccgacgtgaaaagcacctggagccccaacaacatggtcttgaagctttctgaccccaatggtctatacaatagggtcaatgattcatatattataggttccagcaatggcttcctctgcttagtccgtcataatcataaaattggcgctgtgtattttaatatatccaatcctattatcggagagtctatagctcttccaatctttaacgatagggataatggtccacttggatttgggtttgggtttgggtttagtcccataagtcatgtctacaaggtggtgctgtttataagaagaaatccaccatgtaagaagttggagtttatagttttgacagttggctctgggatttggagaagcaatggaaagtatgtagcagtattttgtataccgcagatggggtctttcataatggatttcttcattggttttgcgactgtaaacgatctcgttctaattatcagggattacatctccaagcatccagaggaagtagctgaaacatctgatataaaaatacctgcatggacaactagtgttgcgggatggggaaagaaagatgaaagcgaggtagttgagattccaagacggcagcctaccccatgccttccgctcccaaaggaccttaaacatgtaagtgcagctacagcttccacgctactggatatgattagtggtttgaatgtccttctattgcataagtgcatggtaggaaaggatgagatcaaaaggctcaggaaggagaatgaagaggtccgtgcaagtgtaaagctgctttcgggaaggccgggtgaaggtgattttgtacagggggaggataactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

364

Amino Acids

41.0

Weight (kDa)

8.44

Isoelectric Point (pI)

38.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000430)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g34920 FvH4_3g37340 FvH4_4g12931 FvH4_4g13090 FvH4_4g13100 FvH4_6g33904 FvH4_6g39874
malus_domestica MD04G1018800.v1.1 MD04G1020000.v1.1 MD04G1020500.v1.1 MD04G1021100.v1.1
prunus_persica Prupe.1G167600_v2.0.a1 Prupe.1G167800_v2.0.a1 Prupe.1G167900_v2.0.a1 Prupe.1G168000_v2.0.a1 Prupe.1G168100_v2.0.a1 Prupe.1G169600_v2.0.a1 Prupe.1G169800_v2.0.a1 Prupe.1G169900_v2.0.a1 Prupe.1G170000_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G170100_v2.0.a1 Prupe.1G187600_v2.0.a1
pyrus_communis pycom04g01610 pycom04g01630 pycom04g01660
rosa_chinensis RchiOBHm_Chr3g0474061 RchiOBHm_Chr3g0474071 RchiOBHm_Chr3g0494781 RchiOBHm_Chr4g0412631 RchiOBHm_Chr4g0412831 RchiOBHm_Chr4g0412861
rosa_laevigata RLG00000008252 RLG00000008255 RLG00000008272 RLG00000023952 RLG00000026909 RLG00000026910
rosa_multiflora Rmu_co8499129.1_g000001 Rmu_sc0001755.1_g000010 Rmu_sc0001755.1_g000011 Rmu_sc0002068.1_g000006 Rmu_sc0002072.1_g000048 Rmu_sc0002878.1_g000004 Rmu_sc0003022.1_g000007 Rmu_sc0003961.1_g000002 Rmu_sc0010735.1_g000006 Rmu_sc0016141.1_g000002
rosa_roxburghii Rroxscaffold_3G00261940 Rroxscaffold_4G00285070 Rroxscaffold_5G00356800 Rroxscaffold_5G00357100 Rroxscaffold_5G00357120 Rroxscaffold_6G00407500
rosa_rugosa Rorug01G0370900 Rorug03G0138300 Rorug03G0138700 Rorug04G0117100 Rorug04G0117200 Rorug04G0117300 Rorug04G0117300 Rorug07G0011200
rosa_samantha Rh1AG379300 Rh1BG342700 Rh1BG342800 Rh1BG384500 Rh1BG384800 Rh1CG356400 Rh1CG398400 Rh1CG398800 Rh1DG374100 Rh1DG415800 Rh1DG416000 Rh3AG188500 Rh3BG217500 Rh3BG217700 Rh3CG213400 Rh3CG213600 Rh4AG174500 Rh4AG175800 Rh4AG175900 Rh4AG176000 Rh4BG176100 Rh4BG176400 Rh4CG185400 Rh4CG186900 Rh4CG187100 Rh4DG172900 Rh4DG173100 Rh7AG137700 Rh7BG138000 Rh7CG141600
rosa_wichuraiana Rw4G014620 Rw4G014750 Rw4G014760 Rw4G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 799
AccBSI CCGCTC 1 cut(s) 883
AccI GTMKAC 2 cut(s) 540, 658
AciI CCGC 3 cut(s) 662, 812, 881
AfaI GTAC 1 cut(s) 1077
AfiI CCNNNNNNNGG 3 cut(s) 446, 668, 1064
AflIII ACRYGT 2 cut(s) 259, 901
AgsI TTSAA 3 cut(s) 127, 310, 952
AhlI ACTAGT 1 cut(s) 803
AjiI CACGTC 2 cut(s) 262, 274
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 7 cut(s) 111, 313, 461, 767, 914, 920, 1042
AluI AGCT 7 cut(s) 111, 313, 461, 767, 914, 920, 1042
AlwNI CAGNNNCTG 1 cut(s) 111
AoxI GGCC 1 cut(s) 1055
ApeKI GCWGC 3 cut(s) 862, 911, 1042
AspLEI GCGC 2 cut(s) 220, 416
AspS9I GGNCC 3 cut(s) 491, 892, 1024
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 2 cut(s) 1073, 1079
AvaII GGWCC 3 cut(s) 491, 892, 1024
BanII GRGCYC 1 cut(s) 293
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 3 cut(s) 874, 923, 1029
BccI CCATC 2 cut(s) 661, 810
BceAI ACGGC 1 cut(s) 875
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 1 cut(s) 1059
BcuI ACTAGT 1 cut(s) 803
BfaI CTAG 5 cut(s) 203, 239, 266, 804, 1093
BfmI CTRYAG 2 cut(s) 456, 915
BfoI RGCGCY 2 cut(s) 221, 417
BfuAI ACCTGC 1 cut(s) 799
BisI GCNGC 3 cut(s) 863, 912, 1043
BlsI GCNGC 3 cut(s) 864, 913, 1044
Bme1390I CCNGG 2 cut(s) 286, 1059
Bme18I GGWCC 3 cut(s) 491, 892, 1024
BmgBI CACGTC 2 cut(s) 262, 274
BmgT120I GGNCC 3 cut(s) 491, 892, 1024
BmiI GGNNCC 2 cut(s) 290, 367
BmrFI CCNGG 2 cut(s) 286, 1059
BmsI GCATC 2 cut(s) 175, 760
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 1004
BpuMI CCSGG 1 cut(s) 1059
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 668, 1064
Bse1I ACTGG 2 cut(s) 29, 936
Bse3DI GCAATG 2 cut(s) 379, 637
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 4 cut(s) 135, 751, 821, 994
BseLI CCNNNNNNNGG 3 cut(s) 446, 668, 1064
BseMI GCAATG 2 cut(s) 379, 637
BseMII CTCAG 2 cut(s) 113, 1018
BseNI ACTGG 2 cut(s) 29, 936
BseXI GCAGC 3 cut(s) 874, 923, 1029
BsgI GTGCAG 1 cut(s) 930
BshFI GGCC 1 cut(s) 1057
BsiSI CCGG 1 cut(s) 1058
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 3 cut(s) 446, 668, 1064
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 1 cut(s) 1057
Bsp1286I GDGCHC 1 cut(s) 293
Bsp1407I TGTACA 1 cut(s) 1075
Bsp143I GATC 3 cut(s) 88, 715, 993
BspACI CCGC 3 cut(s) 662, 812, 881
BspANI GGCC 1 cut(s) 1057
BspCNI CTCAG 2 cut(s) 112, 1017
BspLI GGNNCC 2 cut(s) 290, 367
BspMI ACCTGC 1 cut(s) 799
BspQI GCTCTTC 1 cut(s) 468
BsrBI CCGCTC 1 cut(s) 883
BsrDI GCAATG 2 cut(s) 379, 637
BsrGI TGTACA 1 cut(s) 1075
BsrI ACTGG 2 cut(s) 29, 936
BssMI GATC 3 cut(s) 88, 715, 993
BssNAI GTATAC 1 cut(s) 659
BssSI CACGAG 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 659
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 607, 709
Bst6I CTCTTC 2 cut(s) 468, 1014
BstAUI TGTACA 1 cut(s) 1075
BstDEI CTNAG 3 cut(s) 99, 388, 1004
BstF5I GGATG 4 cut(s) 135, 751, 821, 994
BstH2I RGCGCY 2 cut(s) 221, 417
BstHHI GCGC 2 cut(s) 220, 416
BstKTI GATC 3 cut(s) 91, 718, 996
BstMBI GATC 3 cut(s) 88, 715, 993
BstMWI GCNNNNNNNGC 3 cut(s) 288, 384, 917
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 905
BstSCI CCNGG 2 cut(s) 284, 1057
BstSFI CTRYAG 2 cut(s) 456, 915
BstV1I GCAGC 3 cut(s) 874, 923, 1029
BstXI CCANNNNNNTGG 2 cut(s) 301, 931
BstZ17I GTATAC 1 cut(s) 659
BsuRI GGCC 1 cut(s) 1057
BtrI CACGTC 2 cut(s) 262, 274
BtsCI GGATG 4 cut(s) 135, 751, 821, 994
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 799
CaiI CAGNNNCTG 1 cut(s) 111
CfoI GCGC 2 cut(s) 220, 416
Cfr13I GGNCC 3 cut(s) 491, 892, 1024
Csp6I GTAC 1 cut(s) 1076
CviAII CATG 8 cut(s) 53, 301, 536, 576, 795, 873, 902, 976
CviQI GTAC 1 cut(s) 1076
DdeI CTNAG 3 cut(s) 99, 388, 1004
DpnI GATC 3 cut(s) 90, 717, 995
DpnII GATC 3 cut(s) 88, 715, 993
Eam1104I CTCTTC 2 cut(s) 468, 1014
EarI CTCTTC 2 cut(s) 468, 1014
Eco24I GRGCYC 1 cut(s) 293
Eco47I GGWCC 3 cut(s) 491, 892, 1024
EcoO109I RGGNCCY 1 cut(s) 892
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 293
FaeI CATG 8 cut(s) 56, 304, 539, 579, 798, 876, 905, 979
FaqI GGGAC 1 cut(s) 510
FatI CATG 8 cut(s) 52, 300, 535, 575, 794, 872, 901, 975
FauI CCCGC 1 cut(s) 805
FblI GTMKAC 2 cut(s) 540, 658
Fnu4HI GCNGC 3 cut(s) 863, 912, 1043
FokI GGATG 4 cut(s) 122, 738, 828, 1001
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 863, 912, 1043
FspBI CTAG 5 cut(s) 203, 239, 266, 804, 1093
GlaI GCGC 2 cut(s) 219, 415
GluI GCNGC 3 cut(s) 863, 912, 1043
GsuI CTGGAG 1 cut(s) 307
HaeII RGCGCY 2 cut(s) 221, 417
HaeIII GGCC 1 cut(s) 1057
HapII CCGG 1 cut(s) 1058
HhaI GCGC 2 cut(s) 220, 416
Hin1II CATG 8 cut(s) 56, 304, 539, 579, 798, 876, 905, 979
Hin6I GCGC 2 cut(s) 218, 414
HinP1I GCGC 2 cut(s) 218, 414
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 4 cut(s) 117, 350, 452, 850
HpaII CCGG 1 cut(s) 1058
HphI GGTGA 2 cut(s) 1073, 1079
Hpy166II GTNNAC 4 cut(s) 494, 541, 659, 712
Hpy188I TCNGA 3 cut(s) 319, 449, 778
Hpy188III TCNNGA 6 cut(s) 101, 213, 307, 755, 1006, 1050
Hpy8I GTNNAC 4 cut(s) 494, 541, 659, 712
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 5 cut(s) 887, 968, 1003, 1047, 1058
HpyCH4III ACNGT 2 cut(s) 607, 709
HpyCH4IV ACGT 2 cut(s) 261, 273
HpyCH4V TGCA 9 cut(s) 69, 79, 144, 156, 794, 911, 967, 975, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 384, 917
HpyF3I CTNAG 3 cut(s) 99, 388, 1004
HpySE526I ACGT 2 cut(s) 261, 273
Hsp92II CATG 8 cut(s) 56, 304, 539, 579, 798, 876, 905, 979
HspAI GCGC 2 cut(s) 218, 414
Kzo9I GATC 3 cut(s) 88, 715, 993
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 2 cut(s) 288, 888
Lsp1109I GCAGC 3 cut(s) 874, 923, 1029
LweI GCATC 2 cut(s) 175, 760
MaeI CTAG 5 cut(s) 203, 239, 266, 804, 1093
MaeII ACGT 2 cut(s) 261, 273
MalI GATC 3 cut(s) 90, 717, 995
MbiI CCGCTC 1 cut(s) 883
MboI GATC 3 cut(s) 88, 715, 993
MboII GAAGA 6 cut(s) 53, 56, 455, 576, 682, 1031
MfeI CAATTG 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 80, 408, 726
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 5 cut(s) 392, 751, 832, 1015, 1078
MseI TTAA 3 cut(s) 426, 474, 897
MslI CAYNNNNRTG 1 cut(s) 906
MspI CCGG 1 cut(s) 1058
MspR9I CCNGG 2 cut(s) 286, 1059
MunI CAATTG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 288, 384, 917
NciI CCSGG 1 cut(s) 1059
NdeII GATC 3 cut(s) 88, 715, 993
NlaIII CATG 8 cut(s) 56, 304, 539, 579, 798, 876, 905, 979
NlaIV GGNNCC 2 cut(s) 290, 367
NspI RCATGY 1 cut(s) 905
PciI ACATGT 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 3 cut(s) 117, 350, 850
PkrI GCNGC 3 cut(s) 864, 913, 1044
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PpuMI RGGWCCY 1 cut(s) 892
PscI ACATGT 1 cut(s) 901
PsiI TTATAA 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 892
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 290, 367
PspPI GGNCC 3 cut(s) 491, 892, 1024
PspPPI RGGWCCY 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 111
RsaI GTAC 1 cut(s) 1077
RsaNI GTAC 1 cut(s) 1076
RseI CAYNNNNRTG 1 cut(s) 906
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 3 cut(s) 426, 474, 897
SatI GCNGC 3 cut(s) 863, 912, 1043
Sau3AI GATC 3 cut(s) 88, 715, 993
Sau96I GGNCC 3 cut(s) 491, 892, 1024
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 286, 1059
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 2 cut(s) 175, 760
SfcI CTRYAG 2 cut(s) 456, 915
SinI GGWCC 3 cut(s) 491, 892, 1024
SmiMI CAYNNNNRTG 1 cut(s) 906
SpeI ACTAGT 1 cut(s) 803
Sse9I AATT 3 cut(s) 80, 408, 726
SsiI CCGC 3 cut(s) 662, 812, 881
SspMI CTAG 5 cut(s) 203, 239, 266, 804, 1093
StyD4I CCNGG 2 cut(s) 284, 1057
TaaI ACNGT 2 cut(s) 607, 709
TaiI ACGT 2 cut(s) 264, 276
TaqI TCGA 1 cut(s) 115
TasI AATT 3 cut(s) 80, 408, 726
TatI WGTACW 1 cut(s) 1075
TfiI GAWTC 3 cut(s) 117, 350, 850
Tru1I TTAA 3 cut(s) 426, 474, 897
Tru9I TTAA 3 cut(s) 426, 474, 897
TscAI CASTG 1 cut(s) 36
TseI GCWGC 3 cut(s) 862, 911, 1042
TspDTI ATGAA 5 cut(s) 342, 667, 682, 846, 1032
TspGWI ACGGA 2 cut(s) 383, 1016
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 3 cut(s) 491, 892, 1024
XceI RCATGY 1 cut(s) 905
XmiI GTMKAC 2 cut(s) 540, 658
XspI CTAG 5 cut(s) 203, 239, 266, 804, 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.