Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Forward (+)

20398864 .. 20401609

Gene Structure 2746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27240.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACAAAGACGGCCCCTCTGCTCCTCGCCGGAAGGGAAGGTTCAAGCCCAGAGCTCAACCCAGAAGGCCCAACCCTACCACTGAGGTTGAAGATGCTGAGAAGGAAGAAAGAGAAGCCAAGGCTCTGCTTCGAAAGTTCCAGGAGAATCGGGCGAGACGTGCGCCTAAAGCCGAAAAAAAATCAGCTGCTGTGGAAGTGGCATTTGGTCCTGGAGCTCAATCATCAAGCTCCCTGAGGACGTATGGGGTACCAAAGTTAGAAAATCTTGATCAAGGGAGTAGCTTAGGAGTGAAAGGCTATGACGGTCATAAGATTCTGTCATCTTCACCTTTGGCTACCGGTGGAGCTGGAACTGATGCGCCTATGGACATTGATACTGCGGATGCATCCATTTCAAATGTCAAGAATCATTATGTAGAGATTTGGGATTATGAGAACAGCAAATATCCTATTAGTCTTCCACTGAGGAAGCCCTACTCTGGAGACCCAGACATTCTTAATGAGAAGGAGTTTGTTGAGGATGCTGCAAAGGAGTATGACGAGAGTACTATAAACTGTGCTTCAGAACTCGGGCTGCTGGAGCAAAATCCGAAAGAGAAGTTGCTCTTTGTTCAGCTGCCTCCTACTTTACCATTGGTCAAGCGATCTACTAGTGCAAAGGGGAAAGAGAAAGTCGGAAGCTCAACACCATCTGAGAAGGTAGGTGCTGCAAAGAAGAGTGGTGGTTTGGAAGAGTTATCTGAGGGGTATATGGGGAAGATGCTGGTTTACAAGAGTGGAGCAGTCAAGTTCAAGCTAGGAGATGCACTGTATGACGTTTCACCCGGTTCAGATTGTGTGTTTGCTCAAGATATTGCTGCAATCAACACTGCAGCGAGAAAGTGTTGTGTTCTTGGAGAGCTCGGCCAGCGAGTTGTTGTAACTCCTGACGTGGATTCCCTACTAGACGCAACAATCGAGTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

324

Amino Acids

34.91

Weight (kDa)

5.98

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc4	PF05132	199 - 311	3.4e-26	RNA polymerase III RPC4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	250
AciI	CCGC	1 cut(s)	383
AcoI	YGGCCR	1 cut(s)	907
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	252, 550
AfiI	CCNNNNNNNGG	1 cut(s)	482
AgeI	ACCGGT	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	46, 92, 399, 796
AhlI	ACTAGT	1 cut(s)	653
AjiI	CACGTC	2 cut(s)	161, 934
AjnI	CCWGG	2 cut(s)	141, 211
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
Alw21I	GWGCWC	3 cut(s)	58, 220, 906
Alw26I	GTCTC	2 cut(s)	151, 480
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	572
AoxI	GGCC	3 cut(s)	13, 68, 907
ApeKI	GCWGC	7 cut(s)	188, 527, 577, 619, 710, 860, 875
AsiGI	ACCGGT	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	250
AspLEI	GCGC	2 cut(s)	166, 364
AspS9I	GGNCC	3 cut(s)	14, 69, 209
AsuC2I	CCSGG	1 cut(s)	828
AsuHPI	GGTGA	2 cut(s)	321, 816
AsuII	TTCGAA	1 cut(s)	133
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	3 cut(s)	58, 220, 906
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	3 cut(s)	58, 220, 906
BbvI	GCAGC	7 cut(s)	175, 514, 564, 606, 697, 847, 887
BccI	CCATC	1 cut(s)	700
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	143, 213
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	828
BcoDI	GTCTC	2 cut(s)	151, 480
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	3 cut(s)	654, 800, 947
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	7 cut(s)	189, 528, 578, 620, 711, 861, 876
BlsI	GCNGC	7 cut(s)	190, 529, 579, 621, 712, 862, 877
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	3 cut(s)	143, 213, 828
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	572
BmgBI	CACGTC	2 cut(s)	161, 934
BmgT120I	GGNCC	3 cut(s)	14, 69, 209
BmiI	GGNNCC	2 cut(s)	16, 252
BmrFI	CCNGG	3 cut(s)	143, 213, 828
BmsI	GCATC	7 cut(s)	85, 349, 376, 398, 514, 753, 796
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	3 cut(s)	234, 504, 602
Bpu10I	CCTNAGC	1 cut(s)	286
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	834
BpuMI	CCSGG	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse118I	RCCGGY	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	2 cut(s)	143, 213
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	3 cut(s)	389, 391, 529
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseMII	CTCAG	6 cut(s)	75, 90, 227, 458, 687, 735
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	7 cut(s)	175, 514, 564, 606, 697, 847, 887
BshFI	GGCC	3 cut(s)	15, 70, 909
BshNI	GGYRCC	1 cut(s)	250
BshTI	ACCGGT	1 cut(s)	341
BsiHKAI	GWGCWC	3 cut(s)	58, 220, 906
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	31, 342, 828
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	2 cut(s)	151, 480
BsmBI	CGTCTC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	15, 70, 909
Bso31I	GGTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	58, 220, 906
Bsp143I	GATC	2 cut(s)	271, 647
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	15, 70, 909
BspCNI	CTCAG	6 cut(s)	76, 91, 228, 459, 688, 736
BspLI	GGNNCC	2 cut(s)	16, 252
BspMAI	CTGCAG	1 cut(s)	877
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	271, 647
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	143, 213
Bst4CI	ACNGT	3 cut(s)	308, 560, 813
Bst6I	CTCTTC	2 cut(s)	713, 729
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	7 cut(s)	84, 99, 236, 286, 467, 696, 744
BstF5I	GGATG	3 cut(s)	389, 391, 529
BstHHI	GCGC	2 cut(s)	166, 364
BstKTI	GATC	2 cut(s)	274, 650
BstMAI	GTCTC	2 cut(s)	151, 480
BstMBI	GATC	2 cut(s)	271, 647
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 170, 583, 910
BstNI	CCWGG	2 cut(s)	143, 213
BstSCI	CCNGG	3 cut(s)	141, 211, 826
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	7 cut(s)	175, 514, 564, 606, 697, 847, 887
BstV2I	GAAGAC	1 cut(s)	452
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	3 cut(s)	15, 70, 909
BtrI	CACGTC	2 cut(s)	161, 934
BtsCI	GGATG	3 cut(s)	389, 391, 529
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	4 cut(s)	81, 464, 809, 870
Cac8I	GCNNGC	1 cut(s)	911
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	2 cut(s)	166, 364
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	14, 69, 209
CseI	GACGC	1 cut(s)	959
Csp6I	GTAC	2 cut(s)	251, 549
CspAI	ACCGGT	1 cut(s)	341
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviQI	GTAC	2 cut(s)	251, 549
DdeI	CTNAG	7 cut(s)	84, 99, 236, 286, 467, 696, 744
DpnI	GATC	2 cut(s)	273, 649
DpnII	GATC	2 cut(s)	271, 647
EaeI	YGGCCR	1 cut(s)	907
Eam1104I	CTCTTC	2 cut(s)	713, 729
EarI	CTCTTC	2 cut(s)	713, 729
Ecl136II	GAGCTC	3 cut(s)	56, 218, 904
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	3 cut(s)	58, 220, 906
Eco31I	GGTCTC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	3 cut(s)	56, 218, 904
Eco57I	CTGAAG	1 cut(s)	549
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	572
EcoICRI	GAGCTC	3 cut(s)	56, 218, 904
EcoRII	CCWGG	2 cut(s)	141, 211
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	3 cut(s)	58, 220, 906
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	151
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	7 cut(s)	189, 528, 578, 620, 711, 861, 876
FokI	GGATG	3 cut(s)	376, 398, 536
FriOI	GRGCYC	3 cut(s)	58, 220, 906
Fsp4HI	GCNGC	7 cut(s)	189, 528, 578, 620, 711, 861, 876
FspBI	CTAG	3 cut(s)	654, 800, 947
GlaI	GCGC	2 cut(s)	165, 363
GluI	GCNGC	7 cut(s)	189, 528, 578, 620, 711, 861, 876
GsuI	CTGGAG	3 cut(s)	234, 504, 602
HaeIII	GGCC	3 cut(s)	15, 70, 909
HapII	CCGG	3 cut(s)	31, 342, 828
HgaI	GACGC	1 cut(s)	959
HhaI	GCGC	2 cut(s)	166, 364
Hin6I	GCGC	2 cut(s)	164, 362
HinP1I	GCGC	2 cut(s)	164, 362
HinfI	GANTC	4 cut(s)	148, 316, 409, 938
HpaII	CCGG	3 cut(s)	31, 342, 828
HphI	GGTGA	2 cut(s)	321, 816
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	6 cut(s)	568, 594, 680, 697, 745, 835
Hpy188III	TCNNGA	5 cut(s)	269, 406, 483, 851, 929
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	6 cut(s)	28, 33, 60, 97, 502, 694
HpyCH4III	ACNGT	3 cut(s)	308, 560, 813
HpyCH4IV	ACGT	4 cut(s)	160, 242, 819, 933
HpyCH4V	TGCA	7 cut(s)	389, 530, 659, 713, 809, 863, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 170, 583, 910
HpyF3I	CTNAG	7 cut(s)	84, 99, 236, 286, 467, 696, 744
HpySE526I	ACGT	4 cut(s)	160, 242, 819, 933
HspAI	GCGC	2 cut(s)	164, 362
KpnI	GGTACC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	271, 647
LmnI	GCTCC	6 cut(s)	28, 215, 236, 347, 583, 782
Lsp1109I	GCAGC	7 cut(s)	175, 514, 564, 606, 697, 847, 887
LweI	GCATC	7 cut(s)	85, 349, 376, 398, 514, 753, 796
MaeI	CTAG	3 cut(s)	654, 800, 947
MaeII	ACGT	4 cut(s)	160, 242, 819, 933
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	2 cut(s)	273, 649
MboI	GATC	2 cut(s)	271, 647
MboII	GAAGA	7 cut(s)	104, 119, 318, 452, 730, 746, 772
MhlI	GDGCHC	3 cut(s)	58, 220, 906
MmeI	TCCRAC	2 cut(s)	658, 945
MnlI	CCTC	8 cut(s)	28, 36, 79, 231, 462, 514, 633, 739
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	188, 619
MspI	CCGG	3 cut(s)	31, 342, 828
MspR9I	CCNGG	3 cut(s)	143, 213, 828
MvaI	CCWGG	2 cut(s)	143, 213
MwoI	GCNNNNNNNGC	4 cut(s)	161, 170, 583, 910
NciI	CCSGG	1 cut(s)	828
NdeII	GATC	2 cut(s)	271, 647
NlaIV	GGNNCC	2 cut(s)	16, 252
NmeAIII	GCCGAG	1 cut(s)	885
NsiI	ATGCAT	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 957
PfeI	GAWTC	4 cut(s)	148, 316, 409, 938
PfoI	TCCNGGA	2 cut(s)	141, 211
PinAI	ACCGGT	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	190, 529, 579, 621, 712, 862, 877
Psp124BI	GAGCTC	3 cut(s)	58, 220, 906
Psp6I	CCWGG	2 cut(s)	141, 211
PspGI	CCWGG	2 cut(s)	141, 211
PspN4I	GGNNCC	2 cut(s)	16, 252
PspPI	GGNCC	3 cut(s)	14, 69, 209
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	188, 619
RsaI	GTAC	2 cut(s)	252, 550
RsaNI	GTAC	2 cut(s)	251, 549
SacI	GAGCTC	3 cut(s)	58, 220, 906
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	7 cut(s)	189, 528, 578, 620, 711, 861, 876
Sau3AI	GATC	2 cut(s)	271, 647
Sau96I	GGNCC	3 cut(s)	14, 69, 209
ScaI	AGTACT	1 cut(s)	550
ScrFI	CCNGG	3 cut(s)	143, 213, 828
SduI	GDGCHC	3 cut(s)	58, 220, 906
SfaNI	GCATC	7 cut(s)	85, 349, 376, 398, 514, 753, 796
SfcI	CTRYAG	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
SpeI	ACTAGT	1 cut(s)	653
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	3 cut(s)	654, 800, 947
SstI	GAGCTC	3 cut(s)	58, 220, 906
StyD4I	CCNGG	3 cut(s)	141, 211, 826
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	3 cut(s)	308, 560, 813
TaiI	ACGT	4 cut(s)	163, 245, 822, 936
TaqI	TCGA	2 cut(s)	133, 960
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	4 cut(s)	148, 316, 409, 938
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	4 cut(s)	88, 471, 816, 877
TseI	GCWGC	7 cut(s)	188, 527, 577, 619, 710, 860, 875
TspRI	CASTG	4 cut(s)	88, 471, 816, 877
VpaK11BI	GGWCC	1 cut(s)	209
XspI	CTAG	3 cut(s)	654, 800, 947
ZrmI	AGTACT	1 cut(s)	550
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.