Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Reverse (-)

7107426 .. 7109381

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAGCCAACCGCCACCATCTGGTGCTCCTGCTCCCAGAAAGAGGAGGTTCAAGCCAATACTTCGCCGGAAGGCTGAAGTTAAACCCGACCCGGAGGAGGAAGAGCAAACTAGTCATGCTGAAAAGGAGAGGGAGCTGCTCAGACGTTTCCATGAACAATCTTTGAGGGTAAAGCCGAAAAACGAAAAGAAAGAGAAGCCTGTGGAAGTTGCATTTGGTTCTGGGGGTCAATCATCATCGACCATAAGATCATATGGGGCTCCCAGGGGTGCTAATGGTGTTTCCGCAGATGGTGGTTTTAACCCGGTCATTCAAGAGGAGAGAGAATACAAGTCACCATTTGATATCTACGGTCATTACCCTATATCTCTTCCTCTGAGGCAGCCATCTTCTGAAGATCCTGGTATTCCTGTGTCATCTTCTATCATGGTAAAAACAAGTGGTGCTATCAAGCTGAAGCTAGGAGACACCCTCTATGATGTCTCTACAGGAATGAACTGTGATTTTGCCCAGGATGTTGTGGCTATTAATACCACAGAGAAGAAATGTTGCACTATTGGGGAGCTCAATAAGCGAGCTGTTGTGACCCCAGATATCGACTCCGTTTTGAACAGTTTAGTGGATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

210

Amino Acids

22.98

Weight (kDa)

8.36

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc4	PF05132	142 - 199	5.4e-16	RNA polymerase III RPC4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	2 cut(s)	11, 285
AclWI	GGATC	1 cut(s)	392
AcuI	CTGAAG	3 cut(s)	96, 414, 476
AfiI	CCNNNNNNNGG	3 cut(s)	20, 42, 97
AgsI	TTSAA	3 cut(s)	52, 314, 610
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	263, 400, 510
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	5 cut(s)	136, 454, 460, 565, 578
AluI	AGCT	5 cut(s)	136, 454, 460, 565, 578
Alw21I	GWGCWC	2 cut(s)	28, 567
Alw26I	GTCTC	2 cut(s)	459, 487
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	2 cut(s)	136, 382
AseI	ATTAAT	1 cut(s)	528
AsuC2I	CCSGG	2 cut(s)	92, 305
AsuHPI	GGTGA	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	262, 567
Bbv12I	GWGCWC	2 cut(s)	28, 567
BbvI	GCAGC	2 cut(s)	123, 394
BccI	CCATC	3 cut(s)	25, 284, 394
BciT130I	CCWGG	3 cut(s)	265, 402, 512
BcnI	CCSGG	2 cut(s)	92, 305
BcoDI	GTCTC	2 cut(s)	459, 487
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 461
BfmI	CTRYAG	1 cut(s)	486
BisI	GCNGC	2 cut(s)	137, 383
BlsI	GCNGC	2 cut(s)	138, 384
Bme1390I	CCNGG	5 cut(s)	92, 265, 305, 402, 512
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	5 cut(s)	92, 265, 305, 402, 512
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpuMI	CCSGG	2 cut(s)	92, 305
BsaJI	CCNNGG	3 cut(s)	263, 264, 510
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 42, 97
BseBI	CCWGG	3 cut(s)	265, 402, 512
BseDI	CCNNGG	3 cut(s)	263, 264, 510
BseGI	GGATG	1 cut(s)	520
BseLI	CCNNNNNNNGG	3 cut(s)	20, 42, 97
BseMII	CTCAG	2 cut(s)	154, 368
BseRI	GAGGAG	3 cut(s)	58, 110, 332
BseXI	GCAGC	2 cut(s)	123, 394
BsiHKAI	GWGCWC	2 cut(s)	28, 567
BsiSI	CCGG	3 cut(s)	67, 92, 305
BslI	CCNNNNNNNGG	3 cut(s)	20, 42, 97
BsmAI	GTCTC	2 cut(s)	459, 487
Bsp1286I	GDGCHC	3 cut(s)	28, 262, 567
Bsp143I	GATC	2 cut(s)	248, 397
BspACI	CCGC	2 cut(s)	11, 285
BspCNI	CTCAG	2 cut(s)	153, 369
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	96
BssECI	CCNNGG	3 cut(s)	263, 264, 510
BssMI	GATC	2 cut(s)	248, 397
Bst2UI	CCWGG	3 cut(s)	265, 402, 512
Bst4CI	ACNGT	3 cut(s)	353, 500, 614
Bst6I	CTCTTC	2 cut(s)	96, 375
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	2 cut(s)	140, 377
BstF5I	GGATG	1 cut(s)	520
BstKTI	GATC	2 cut(s)	251, 400
BstMAI	GTCTC	2 cut(s)	459, 487
BstMBI	GATC	2 cut(s)	248, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstNI	CCWGG	3 cut(s)	265, 402, 512
BstSCI	CCNGG	5 cut(s)	90, 263, 303, 400, 510
BstSFI	CTRYAG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	123, 394
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BtsCI	GGATG	1 cut(s)	520
Cac8I	GCNNGC	1 cut(s)	576
CviAII	CATG	3 cut(s)	116, 152, 427
DdeI	CTNAG	2 cut(s)	140, 377
DpnI	GATC	2 cut(s)	250, 399
DpnII	GATC	2 cut(s)	248, 397
Eam1104I	CTCTTC	2 cut(s)	96, 375
EarI	CTCTTC	2 cut(s)	96, 375
Ecl136II	GAGCTC	1 cut(s)	565
Eco24I	GRGCYC	2 cut(s)	262, 567
Eco32I	GATATC	2 cut(s)	346, 595
Eco53kI	GAGCTC	1 cut(s)	565
Eco57I	CTGAAG	3 cut(s)	96, 414, 476
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	3 cut(s)	263, 400, 510
EcoRV	GATATC	2 cut(s)	346, 595
EcoT38I	GRGCYC	2 cut(s)	262, 567
FaeI	CATG	3 cut(s)	119, 155, 430
FaiI	YATR	9 cut(s)	117, 153, 245, 253, 255, 365, 428, 477, 628
FatI	CATG	3 cut(s)	115, 151, 426
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	137, 383
FokI	GGATG	1 cut(s)	527
FriOI	GRGCYC	2 cut(s)	262, 567
Fsp4HI	GCNGC	2 cut(s)	137, 383
FspBI	CTAG	2 cut(s)	111, 461
GluI	GCNGC	2 cut(s)	137, 383
HapII	CCGG	3 cut(s)	67, 92, 305
Hin1II	CATG	3 cut(s)	119, 155, 430
HinfI	GANTC	1 cut(s)	599
HpaII	CCGG	3 cut(s)	67, 92, 305
HphI	GGTGA	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	143, 378, 394
Hpy188III	TCNNGA	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	3 cut(s)	353, 500, 614
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	2 cut(s)	212, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	140, 377
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	119, 155, 430
Kzo9I	GATC	2 cut(s)	248, 397
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	5 cut(s)	31, 37, 133, 265, 562
Lsp1109I	GCAGC	2 cut(s)	123, 394
MaeI	CTAG	2 cut(s)	111, 461
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	333, 583
MalI	GATC	2 cut(s)	250, 399
MboI	GATC	2 cut(s)	248, 397
MboII	GAAGA	6 cut(s)	113, 362, 381, 407, 411, 553
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	3 cut(s)	28, 262, 567
MlyI	GAGTC	1 cut(s)	593
MseI	TTAA	3 cut(s)	81, 300, 528
MspI	CCGG	3 cut(s)	67, 92, 305
MspR9I	CCNGG	5 cut(s)	92, 265, 305, 402, 512
MvaI	CCWGG	3 cut(s)	265, 402, 512
MwoI	GCNNNNNNNGC	1 cut(s)	571
NciI	CCSGG	2 cut(s)	92, 305
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	248, 397
NlaIII	CATG	3 cut(s)	119, 155, 430
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	333, 583
PasI	CCCWGGG	1 cut(s)	264
PciSI	GCTCTTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	138, 384
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PshBI	ATTAAT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	263, 400, 510
PspGI	CCWGG	3 cut(s)	263, 400, 510
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	397
SacI	GAGCTC	1 cut(s)	567
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	81, 300, 528
SatI	GCNGC	2 cut(s)	137, 383
Sau3AI	GATC	2 cut(s)	248, 397
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	5 cut(s)	92, 265, 305, 402, 512
SduI	GDGCHC	3 cut(s)	28, 262, 567
SetI	ASST	7 cut(s)	50, 138, 148, 456, 462, 567, 580
SfcI	CTRYAG	1 cut(s)	486
SpeI	ACTAGT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	11, 285
SspMI	CTAG	2 cut(s)	111, 461
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	5 cut(s)	90, 263, 303, 400, 510
TaaI	ACNGT	3 cut(s)	353, 500, 614
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	239, 597
Tru1I	TTAA	3 cut(s)	81, 300, 528
Tru9I	TTAA	3 cut(s)	81, 300, 528
TseFI	GTSAC	2 cut(s)	333, 583
TseI	GCWGC	2 cut(s)	136, 382
Tsp45I	GTSAC	2 cut(s)	333, 583
TspDTI	ATGAA	2 cut(s)	168, 509
TspGWI	ACGGA	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	528
XspI	CTAG	2 cut(s)	111, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.