Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Forward (+)

27727837 .. 27731921

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G275200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATAAGGATAACGACGGGTCATCTGGTCGTCCGAGAACGCATAAGTTTATACCGAAAGGTCGCAAAAAGACCAGAGCACCTGTGCCCGCACCTGAGGTTGGTGATAAGGACGATGGTGAAGAAGCCAGAAAGGCCGAGGCTCTGTTTCGTCAGTTCAATGAGAATTCCCGAAGACGGGGGCCTAAAGTCGAAAAGAAATCTTCAGTGAGAGTTGCATTTGGTCCTGGAGCAGATACATCCTCAACATCTATTAGAACATATGGAACTGCAAAGGATGGTAATACTGGCAAAAGCAGCAGCTCAGGACTCGAAGACTCTGATGATGATCAAAGTCCACCAACTTTGCCTGAAGTTGGAAAAGATGTGTCCATGGAAGATGCTACTGATGTAGAACCTCTTCAGACTGTGAAGCAAAGATATACAGAATGTTGGGATTCTGAGACTACATACTATCCTACTACTCTCCCTCTCAGGAAGCCCAACTCTGGAGACCCCGAAGTCCTTAATGAGAATGAATTTGGGGAGGATGCTGAAAAAGAGTATGATGAGAGCACTATAAACCATGCTGCAGAACTTGGGCTGCTGGAGGAAAAAGTGGAAGCAAGGATGTTGTTTGTTCAACTTCCTACCATTTTGCCACTGACCAAGCGATCAGCTACTGCAAAGGGAAAAGAGAAAGTTGGAAGCTCAACATCACTGGAGAGCACAGGTGCTCCAAAGAAGGGCTGTAGTTTGGAGGAGCTGCCTGGTGGATATATGGGTAAAATGCTAGTCTACAAGAGTGGAGCAATCAAGTTGAAGCTCGGAAATACCCTCTGTGATGTTTCACCTGGTTCAGATTGTCTATGTGATGAAGATGTTGCGGTAATCAACACTGAGGAGAAGAGATGTTGTGTTCTTGGAGGGATCAGCCACCGAGCTGTAGTAACTCCTAATGTAGATTCCCTCCTAAATGTGATTAGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

325

Amino Acids

35.08

Weight (kDa)

5.13

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	2 cut(s)	90, 866
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	2 cut(s)	166, 518
AcuI	CTGAAG	3 cut(s)	189, 372, 386
AfiI	CCNNNNNNNGG	6 cut(s)	101, 177, 178, 356, 488, 725
AgsI	TTSAA	3 cut(s)	160, 623, 802
AjnI	CCWGG	3 cut(s)	226, 748, 832
AluBI	AGCT	7 cut(s)	303, 659, 690, 745, 805, 923, 966
AluI	AGCT	7 cut(s)	303, 659, 690, 745, 805, 923, 966
Alw21I	GWGCWC	4 cut(s)	82, 557, 710, 718
Alw26I	GTCTC	2 cut(s)	437, 486
AlwI	GGATC	1 cut(s)	917
AlwNI	CAGNNNCTG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	135, 182
ApeKI	GCWGC	5 cut(s)	297, 300, 569, 583, 745
ApoI	RAATTY	2 cut(s)	166, 518
Asp700I	GAANNNNTTC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	182, 224
AsuHPI	GGTGA	3 cut(s)	116, 131, 822
AvaII	GGWCC	1 cut(s)	224
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BbsI	GAAGAC	2 cut(s)	181, 321
Bbv12I	GWGCWC	4 cut(s)	82, 557, 710, 718
BbvI	GCAGC	5 cut(s)	309, 312, 556, 570, 732
BccI	CCATC	2 cut(s)	110, 272
BciT130I	CCWGG	3 cut(s)	228, 750, 834
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	437, 486
BfaI	CTAG	1 cut(s)	773
BfmI	CTRYAG	3 cut(s)	570, 730, 924
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	5 cut(s)	298, 301, 570, 584, 746
BlsI	GCNGC	5 cut(s)	299, 302, 571, 585, 747
Bme1390I	CCNGG	3 cut(s)	228, 750, 834
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	182, 224
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	228, 750, 834
BmsI	GCATC	2 cut(s)	370, 520
BpiI	GAAGAC	2 cut(s)	181, 321
BpmI	CTGGAG	4 cut(s)	249, 510, 608, 722
Bpu10I	CCTNAGC	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	2 cut(s)	138, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	700, 730
Bsc4I	CCNNNNNNNGG	6 cut(s)	101, 177, 178, 356, 488, 725
Bse1I	ACTGG	2 cut(s)	292, 705
Bse21I	CCTNAGG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	3 cut(s)	228, 750, 834
BseDI	CCNNGG	2 cut(s)	138, 372
BseGI	GGATG	4 cut(s)	239, 283, 535, 615
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	6 cut(s)	101, 177, 178, 356, 488, 725
BseMII	CTCAG	5 cut(s)	87, 318, 432, 487, 870
BseNI	ACTGG	2 cut(s)	292, 705
BseRI	GAGGAG	2 cut(s)	755, 896
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	5 cut(s)	309, 312, 556, 570, 732
BshFI	GGCC	2 cut(s)	137, 184
BsiHKAI	GWGCWC	4 cut(s)	82, 557, 710, 718
BslI	CCNNNNNNNGG	6 cut(s)	101, 177, 178, 356, 488, 725
BsmAI	GTCTC	2 cut(s)	437, 486
BsnI	GGCC	2 cut(s)	137, 184
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	5 cut(s)	82, 90, 557, 710, 718
Bsp143I	GATC	3 cut(s)	328, 653, 909
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	2 cut(s)	90, 866
BspANI	GGCC	2 cut(s)	137, 184
BspCNI	CTCAG	5 cut(s)	88, 317, 433, 486, 871
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	917
BspTNI	GGTCTC	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	292, 705
BssECI	CCNNGG	2 cut(s)	138, 372
BssMI	GATC	3 cut(s)	328, 653, 909
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	228, 750, 834
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	405, 881
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	5 cut(s)	96, 304, 441, 473, 879
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	4 cut(s)	239, 283, 535, 615
BstKTI	GATC	3 cut(s)	331, 656, 912
BstMAI	GTCTC	2 cut(s)	437, 486
BstMBI	GATC	3 cut(s)	328, 653, 909
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 297
BstNI	CCWGG	3 cut(s)	228, 750, 834
BstSCI	CCNGG	3 cut(s)	226, 748, 832
BstSFI	CTRYAG	3 cut(s)	570, 730, 924
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	309, 312, 556, 570, 732
BstV2I	GAAGAC	2 cut(s)	181, 321
Bsu36I	CCTNAGG	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	137, 184
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	239, 283, 535, 615
BtsIMutI	CAGTG	4 cut(s)	213, 641, 698, 876
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	662
Cfr13I	GGNCC	2 cut(s)	182, 224
CsiI	ACCWGGT	1 cut(s)	832
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	2 cut(s)	373, 566
DdeI	CTNAG	5 cut(s)	96, 304, 441, 473, 879
DpnI	GATC	3 cut(s)	330, 655, 911
DpnII	GATC	3 cut(s)	328, 653, 909
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	2 cut(s)	405, 881
EarI	CTCTTC	2 cut(s)	405, 881
Eco130I	CCWWGG	1 cut(s)	372
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	3 cut(s)	189, 372, 386
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	226, 748, 832
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	376, 569
FatI	CATG	2 cut(s)	372, 565
FauI	CCCGC	1 cut(s)	97
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	5 cut(s)	298, 301, 570, 584, 746
FokI	GGATG	4 cut(s)	226, 290, 542, 622
Fsp4HI	GCNGC	5 cut(s)	298, 301, 570, 584, 746
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	5 cut(s)	298, 301, 570, 584, 746
GsuI	CTGGAG	4 cut(s)	249, 510, 608, 722
HaeIII	GGCC	2 cut(s)	137, 184
Hin1II	CATG	2 cut(s)	376, 569
HinfI	GANTC	4 cut(s)	309, 317, 437, 944
HphI	GGTGA	3 cut(s)	116, 131, 822
Hpy166II	GTNNAC	2 cut(s)	338, 778
Hpy188I	TCNGA	6 cut(s)	36, 322, 405, 442, 809, 841
Hpy188III	TCNNGA	4 cut(s)	171, 306, 475, 489
Hpy8I	GTNNAC	2 cut(s)	338, 778
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	718
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	4 cut(s)	218, 272, 572, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 297
HpyF3I	CTNAG	5 cut(s)	96, 304, 441, 473, 879
Hsp92II	CATG	2 cut(s)	376, 569
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	328, 653, 909
LmnI	GCTCC	4 cut(s)	230, 721, 742, 788
Lsp1109I	GCAGC	5 cut(s)	309, 312, 556, 570, 732
LweI	GCATC	2 cut(s)	370, 520
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	1 cut(s)	773
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	3 cut(s)	330, 655, 911
MboI	GATC	3 cut(s)	328, 653, 909
MboII	GAAGA	8 cut(s)	134, 186, 195, 326, 389, 392, 869, 898
MhlI	GDGCHC	5 cut(s)	82, 90, 557, 710, 718
MluCI	AATT	2 cut(s)	166, 518
MlyI	GAGTC	2 cut(s)	303, 311
MmeI	TCCRAC	2 cut(s)	337, 664
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	2 cut(s)	507, 973
MspR9I	CCNGG	3 cut(s)	228, 750, 834
MvaI	CCWGG	3 cut(s)	228, 750, 834
MwoI	GCNNNNNNNGC	2 cut(s)	134, 297
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	3 cut(s)	328, 653, 909
NlaIII	CATG	2 cut(s)	376, 569
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	437, 944
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	299, 302, 571, 585, 747
PleI	GAGTC	2 cut(s)	303, 311
PpsI	GAGTC	2 cut(s)	303, 311
Psp6I	CCWGG	3 cut(s)	226, 748, 832
PspGI	CCWGG	3 cut(s)	226, 748, 832
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	182, 224
PstI	CTGCAG	1 cut(s)	574
PstNI	CAGNNNCTG	1 cut(s)	662
SaqAI	TTAA	2 cut(s)	507, 973
SatI	GCNGC	5 cut(s)	298, 301, 570, 584, 746
Sau3AI	GATC	3 cut(s)	328, 653, 909
Sau96I	GGNCC	2 cut(s)	182, 224
SchI	GAGTC	2 cut(s)	303, 311
ScrFI	CCNGG	3 cut(s)	228, 750, 834
SduI	GDGCHC	5 cut(s)	82, 90, 557, 710, 718
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	2 cut(s)	370, 520
SfcI	CTRYAG	3 cut(s)	570, 730, 924
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	166, 518
SsiI	CCGC	2 cut(s)	90, 866
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	3 cut(s)	226, 748, 832
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	2 cut(s)	192, 312
TasI	AATT	2 cut(s)	166, 518
TfiI	GAWTC	2 cut(s)	437, 944
Tru1I	TTAA	2 cut(s)	507, 973
Tru9I	TTAA	2 cut(s)	507, 973
TscAI	CASTG	4 cut(s)	213, 648, 705, 883
TseI	GCWGC	5 cut(s)	297, 300, 569, 583, 745
TspDTI	ATGAA	2 cut(s)	531, 870
TspRI	CASTG	4 cut(s)	213, 648, 705, 883
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	166, 518
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.