Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009793.1

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Reverse (-)

12125 .. 13681

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009793.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggccgaagctcaagaatccgatcaaaagagtgaagaagaagaagaagaggaacactatggaagccgaagctcaagaatcgagcccccaaaacgacgccatcatcacctccttctgcgagatcacctccgcctccaaacaagaagccctcttcttcctcgaattccacaattacgacctcgacgccgccgtttccactttcttggacaactaaaacgccgccgccgtcaccgtcaccaacccgagcaaaatgccaaagagaagttgctctttgttcaattgcctcctactctaccattggtcaagcgacctactagtgcaaaggggaaagagaaagtcggaagctcagcaccatcagagaaggtaggtgctgcaaagaagggcggtagtttggaagagttatctgaggggtatatggggaagatgctggtttacaagagtggagcagtcaagttcaagctaggagatgcactgtatgatgtttcacccggttcagattgtatatttgctcaagatgttgctgcaatcaacactgcagcaagaaagtattgtgttcttggaaagcttggccagcgagttgttataactcctgatgtggattccctactagacacaacgattgagttggactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

210

Amino Acids

23.79

Weight (kDa)

9.74

Isoelectric Point (pI)

82.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	584
AciI	CCGC	5 cut(s)	130, 187, 220, 223, 384
AcoI	YGGCCR	2 cut(s)	3, 568
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	2 cut(s)	97, 184
AgsI	TTSAA	2 cut(s)	278, 457
AhlI	ACTAGT	1 cut(s)	314
AluBI	AGCT	5 cut(s)	11, 72, 345, 460, 565
AluI	AGCT	5 cut(s)	11, 72, 345, 460, 565
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	3, 568
ApeKI	GCWGC	3 cut(s)	371, 521, 536
ApoI	RAATTY	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	489
AsuHPI	GGTGA	5 cut(s)	98, 116, 221, 227, 477
AvaI	CYCGRG	1 cut(s)	242
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	358, 508, 548
BccI	CCATC	2 cut(s)	108, 361
BceAI	ACGGC	2 cut(s)	174, 210
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcnI	CCSGG	1 cut(s)	489
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	3 cut(s)	315, 461, 608
BfmI	CTRYAG	1 cut(s)	534
BisI	GCNGC	6 cut(s)	187, 220, 223, 372, 522, 537
BlpI	GCTNAGC	1 cut(s)	346
BlsI	GCNGC	6 cut(s)	188, 221, 224, 373, 523, 538
Bme1390I	CCNGG	1 cut(s)	489
BmeT110I	CYCGRG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	414, 457
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
Bpu1102I	GCTNAGC	1 cut(s)	346
BpuEI	CTTGAG	2 cut(s)	58, 495
BpuMI	CCSGG	1 cut(s)	489
BsaHI	GRCGYC	2 cut(s)	97, 184
BseMII	CTCAG	2 cut(s)	360, 396
BseXI	GCAGC	3 cut(s)	358, 508, 548
BshFI	GGCC	2 cut(s)	5, 570
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	489
BsnI	GGCC	2 cut(s)	5, 570
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	22, 121
Bsp1720I	GCTNAGC	1 cut(s)	346
BspACI	CCGC	5 cut(s)	130, 187, 220, 223, 384
BspANI	GGCC	2 cut(s)	5, 570
BspCNI	CTCAG	2 cut(s)	359, 397
BspMAI	CTGCAG	1 cut(s)	538
BssMI	GATC	2 cut(s)	22, 121
BssNI	GRCGYC	2 cut(s)	97, 184
Bst4CI	ACNGT	2 cut(s)	233, 474
Bst6I	CTCTTC	3 cut(s)	42, 156, 390
BstACI	GRCGYC	2 cut(s)	97, 184
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	2 cut(s)	346, 405
BstKTI	GATC	2 cut(s)	25, 124
BstMBI	GATC	2 cut(s)	22, 121
BstMWI	GCNNNNNNNGC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	358, 508, 548
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	5, 570
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	2 cut(s)	470, 531
Cac8I	GCNNGC	1 cut(s)	572
CseI	GACGC	2 cut(s)	105, 192
DdeI	CTNAG	2 cut(s)	346, 405
DpnI	GATC	2 cut(s)	24, 123
DpnII	GATC	2 cut(s)	22, 121
EaeI	YGGCCR	2 cut(s)	3, 568
Eam1104I	CTCTTC	3 cut(s)	42, 156, 390
EarI	CTCTTC	3 cut(s)	42, 156, 390
EciI	GGCGGA	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	87
FaiI	YATR	6 cut(s)	60, 414, 416, 477, 503, 584
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
Fnu4HI	GCNGC	6 cut(s)	187, 220, 223, 372, 522, 537
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	6 cut(s)	187, 220, 223, 372, 522, 537
FspBI	CTAG	3 cut(s)	315, 461, 608
GluI	GCNGC	6 cut(s)	187, 220, 223, 372, 522, 537
HaeIII	GGCC	2 cut(s)	5, 570
HapII	CCGG	1 cut(s)	489
HgaI	GACGC	2 cut(s)	105, 192
Hin1I	GRCGYC	2 cut(s)	97, 184
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	3 cut(s)	17, 78, 599
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	5 cut(s)	98, 116, 221, 227, 477
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	5 cut(s)	22, 341, 358, 406, 496
Hpy188III	TCNNGA	4 cut(s)	14, 75, 512, 590
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	2 cut(s)	99, 186
HpyAV	CCTTC	3 cut(s)	122, 355, 373
HpyCH4III	ACNGT	2 cut(s)	233, 474
HpyCH4V	TGCA	5 cut(s)	320, 374, 470, 524, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	571
HpyF3I	CTNAG	2 cut(s)	346, 405
Hsp92I	GRCGYC	2 cut(s)	97, 184
Kzo9I	GATC	2 cut(s)	22, 121
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	4 cut(s)	413, 502, 584, 603
Lsp1109I	GCAGC	3 cut(s)	358, 508, 548
LweI	GCATC	2 cut(s)	414, 457
MaeI	CTAG	3 cut(s)	315, 461, 608
MaeIII	GTNAC	2 cut(s)	227, 233
MalI	GATC	2 cut(s)	24, 123
MboI	GATC	2 cut(s)	22, 121
MboII	GAAGA	9 cut(s)	47, 50, 53, 56, 59, 143, 146, 407, 433
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	3 cut(s)	162, 170, 278
MluNI	TGGCCA	1 cut(s)	570
MmeI	TCCRAC	2 cut(s)	319, 606
MnlI	CCTC	9 cut(s)	43, 119, 137, 143, 159, 168, 189, 294, 400
Mox20I	TGGCCA	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	570
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	571
NciI	CCSGG	1 cut(s)	489
NdeII	GATC	2 cut(s)	22, 121
NmuCI	GTSAC	2 cut(s)	227, 233
PcsI	WCGNNNNNNNCGW	2 cut(s)	187, 223
PfeI	GAWTC	3 cut(s)	17, 78, 599
PkrI	GCNGC	6 cut(s)	188, 221, 224, 373, 523, 538
PsiI	TTATAA	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	538
SatI	GCNGC	6 cut(s)	187, 220, 223, 372, 522, 537
Sau3AI	GATC	2 cut(s)	22, 121
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	414, 457
SfcI	CTRYAG	1 cut(s)	534
SmlI	CTYRAG	3 cut(s)	12, 73, 510
SmoI	CTYRAG	3 cut(s)	12, 73, 510
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	3 cut(s)	162, 170, 278
SsiI	CCGC	5 cut(s)	130, 187, 220, 223, 384
SspMI	CTAG	3 cut(s)	315, 461, 608
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	2 cut(s)	233, 474
TaqI	TCGA	3 cut(s)	81, 160, 181
TasI	AATT	3 cut(s)	162, 170, 278
TauI	GCSGC	3 cut(s)	189, 222, 225
TfiI	GAWTC	3 cut(s)	17, 78, 599
TscAI	CASTG	2 cut(s)	477, 538
TseFI	GTSAC	2 cut(s)	227, 233
TseI	GCWGC	3 cut(s)	371, 521, 536
Tsp45I	GTSAC	2 cut(s)	227, 233
TspRI	CASTG	2 cut(s)	477, 538
XapI	RAATTY	1 cut(s)	162
XspI	CTAG	3 cut(s)	315, 461, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.