Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Reverse (-)

4954214 .. 4954754

Gene Structure 541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTCTTTCTTCAGTTACCGCAGTATCTGCCTTCAATGAAACGATCAGCTACAGCAGATGGCCCTGAGGCAACAAAAAGCTCAGGGCCACCGGGAAGCAGGCACAATATGCAGAAGTTTTGTGCTTTGTCTGATTTACCACCTGGCCACATGGGTAAGATGCTGGTGTACAGAAGCGGTGCTATCAAGCTGAAACTAGGAGATACCCTTTTCGATGTCTCCTCAGGAATGAAGTGTGGTTTTGCCCAGGATCTTGTGGTTACTAATGAGAACGAGAAGGGATTTGGTATTATCGGCGAGCTGAACAAGCGAGCCATTGCAACCCCAGATATTGACTCCATTTTGGAAAGTGTAGATGGTTTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

123

Amino Acids

13.15

Weight (kDa)

6.71

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	20, 177
AclWI	GGATC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	145
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	142, 246
AluBI	AGCT	4 cut(s)	50, 81, 190, 301
AluI	AGCT	4 cut(s)	50, 81, 190, 301
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	258
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	3 cut(s)	61, 86, 145
AspS9I	GGNCC	2 cut(s)	62, 86
AsuC2I	CCSGG	1 cut(s)	93
AxyI	CCTNAGG	2 cut(s)	66, 223
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BalI	TGGCCA	1 cut(s)	147
BccI	CCATC	2 cut(s)	53, 350
BciT130I	CCWGG	2 cut(s)	144, 248
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	197, 367
BfmI	CTRYAG	1 cut(s)	51
Bme1390I	CCNGG	3 cut(s)	93, 144, 248
BmgT120I	GGNCC	2 cut(s)	62, 86
BmrFI	CCNGG	3 cut(s)	93, 144, 248
BmsI	GCATC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	246
Bse21I	CCTNAGG	2 cut(s)	66, 223
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	2 cut(s)	144, 248
BseDI	CCNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	57, 96, 237
BseRI	GAGGAG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	63, 88, 147
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	3 cut(s)	63, 88, 147
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	44, 250
BspACI	CCGC	2 cut(s)	20, 177
BspANI	GGCC	3 cut(s)	63, 88, 147
BspCNI	CTCAG	3 cut(s)	58, 95, 236
BspPI	GGATC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	44, 250
Bst2UI	CCWGG	2 cut(s)	144, 248
BstAPI	GCANNNNNTGC	2 cut(s)	28, 109
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	3 cut(s)	101, 299, 312
BstDEI	CTNAG	3 cut(s)	66, 82, 223
BstKTI	GATC	2 cut(s)	47, 253
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	44, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 109, 307
BstNI	CCWGG	2 cut(s)	144, 248
BstSCI	CCNGG	3 cut(s)	91, 142, 246
BstSFI	CTRYAG	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
Bsu36I	CCTNAGG	2 cut(s)	66, 223
BsuRI	GGCC	3 cut(s)	63, 88, 147
Cac8I	GCNNGC	3 cut(s)	101, 299, 312
CaiI	CAGNNNCTG	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	62, 86
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	8 cut(s)	50, 63, 81, 88, 147, 190, 301, 314
CviKI_1	RGCY	8 cut(s)	50, 63, 81, 88, 147, 190, 301, 314
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	66, 82, 223
DpnI	GATC	2 cut(s)	46, 252
DpnII	GATC	2 cut(s)	44, 250
EaeI	YGGCCR	1 cut(s)	145
Eco81I	CCTNAGG	2 cut(s)	66, 223
EcoRII	CCWGG	2 cut(s)	142, 246
FaeI	CATG	1 cut(s)	154
FaiI	YATR	2 cut(s)	110, 152
FatI	CATG	1 cut(s)	150
FspBI	CTAG	2 cut(s)	197, 367
HaeIII	GGCC	3 cut(s)	63, 88, 147
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	225
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	42, 271
HpyCH4V	TGCA	2 cut(s)	112, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 109, 307
HpyF3I	CTNAG	3 cut(s)	66, 82, 223
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	44, 250
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	197, 367
MaeIII	GTNAC	2 cut(s)	15, 259
MalI	GATC	2 cut(s)	46, 252
MboI	GATC	2 cut(s)	44, 250
MflI	RGATCY	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	2 cut(s)	61, 232
Mox20I	TGGCCA	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	147
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	93, 144, 248
MvaI	CCWGG	2 cut(s)	144, 248
MwoI	GCNNNNNNNGC	3 cut(s)	28, 109, 307
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	44, 250
NlaIII	CATG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	142, 246
PspGI	CCWGG	2 cut(s)	142, 246
PspPI	GGNCC	2 cut(s)	62, 86
PstNI	CAGNNNCTG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
Sau3AI	GATC	2 cut(s)	44, 250
Sau96I	GGNCC	2 cut(s)	62, 86
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	93, 144, 248
SetI	ASST	5 cut(s)	52, 83, 145, 192, 303
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	51
SsiI	CCGC	2 cut(s)	20, 177
SspMI	CTAG	2 cut(s)	197, 367
StyD4I	CCNGG	3 cut(s)	91, 142, 246
TaqI	TCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	53, 245
XspI	CTAG	2 cut(s)	197, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.