Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Reverse (-)

35345655 .. 35346584

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGGGAAGATGCTGGTTTACAAGAGTGGAGCAGTCAAGTTCAAGCTAGGAGATGCACTGTATGATGTTTCACCCGGTTCAGATTGTATATTTTCTCAAGATGTTGCTGCAATCAACACTGCAGCGAGAAAGTGTTGTGTTCTTGGAGAGCTTGGCCAGCGAGTTGTTATAACTCCTGATGTGGATTCCCTACTAGATGCAACGATTGAGTTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

72

Amino Acids

7.64

Weight (kDa)

4.61

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc4	PF05132	1 - 61	5.4e-19	RNA polymerase III RPC4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	2 cut(s)	46, 151
AluI	AGCT	2 cut(s)	46, 151
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	107, 122
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	94, 134
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	2 cut(s)	47, 194
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	108, 123
BlsI	GCNGC	2 cut(s)	109, 124
Bme1390I	CCNGG	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	2 cut(s)	43, 187
BpuEI	CTTGAG	1 cut(s)	81
BpuMI	CCSGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	94, 134
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	75
BsnI	GGCC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	156
BspMAI	CTGCAG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	94, 134
BsuRI	GGCC	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	56, 117
Cac8I	GCNNGC	1 cut(s)	158
CviJI	RGCY	3 cut(s)	46, 151, 156
CviKI_1	RGCY	3 cut(s)	46, 151, 156
EaeI	YGGCCR	1 cut(s)	154
FaiI	YATR	3 cut(s)	63, 89, 170
Fnu4HI	GCNGC	2 cut(s)	108, 123
Fsp4HI	GCNGC	2 cut(s)	108, 123
FspBI	CTAG	2 cut(s)	47, 194
GluI	GCNGC	2 cut(s)	108, 123
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	75
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	2 cut(s)	98, 176
Hpy8I	GTNNAC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	56, 110, 122, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	3 cut(s)	88, 170, 189
Lsp1109I	GCAGC	2 cut(s)	94, 134
LweI	GCATC	2 cut(s)	43, 187
MaeI	CTAG	2 cut(s)	47, 194
MboII	GAAGA	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	109, 124
PsiI	TTATAA	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	124
SatI	GCNGC	2 cut(s)	108, 123
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	2 cut(s)	48, 153
SfaNI	GCATC	2 cut(s)	43, 187
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SspMI	CTAG	2 cut(s)	47, 194
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	60
TfiI	GAWTC	1 cut(s)	185
TscAI	CASTG	2 cut(s)	63, 124
TseI	GCWGC	2 cut(s)	107, 122
TspRI	CASTG	2 cut(s)	63, 124
XspI	CTAG	2 cut(s)	47, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.