Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004359.1

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Forward (+)

192585 .. 194646

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004359.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgagccaagcgccacaatctggtgctcctgctcccagaaagaggaggttcataccaaaaggatctcgcccgaaggctgaagttaaacccgacccggaggaggaagagcaagctagtcatgctgaaaaggagagggagctgctcagacgtttccatgaacaatctttgagggtaaagccgaaaaacgaaaagaaagagaagcctgtggaagttgcatttggttctgggggtcaatcatcatccaccataagatcatatggggctcccaggggtgctaatggtggtggttttaacccggtcattcaagaggagaaagaatacaagtcaccatttgatatctacggtcattaccctatatctcttcctctgaggcagccatcttatgaagatcctgcaattcttaaccagcaagaatttggggatggttcagaggaatcaatttatgatgaaaatgcaacaccagcggctgatgatcttgatctaaaggaggaaaatagagcaacaagtatgttctttcttcatctaccaccgaccttgcctattttaaagcaaccagcaggccaacaggtaaccagtagctcaggggcaccgggaggagcacataatacggagaagccttgttctttgggtgagttaccagctggcttcatgggtaagatgctggtgtacagaagtggtgctatcaagctgaagctaggagacaccctctatgatgtctctacaggaatgaactgtgattttgcccaggatgttgtggctattaataccacagagaagaagtgttgcactattggggagctcaataagcgagctgttgtgaccccagatattgactccgttttgaacagtttagaggatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

287

Amino Acids

31.36

Weight (kDa)

5.44

Isoelectric Point (pI)

64.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	70, 383
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	99, 710
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	3 cut(s)	20, 42, 100
AgsI	TTSAA	2 cut(s)	305, 844
AjnI	CCWGG	2 cut(s)	266, 744
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	8 cut(s)	113, 139, 579, 641, 688, 694, 799, 812
AluI	AGCT	8 cut(s)	113, 139, 579, 641, 688, 694, 799, 812
Alw21I	GWGCWC	3 cut(s)	28, 601, 801
Alw26I	GTCTC	2 cut(s)	693, 721
AlwI	GGATC	2 cut(s)	70, 383
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	2 cut(s)	139, 373
ApoI	RAATTY	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	762
AspLEI	GCGC	1 cut(s)	13
AsuC2I	CCSGG	3 cut(s)	95, 296, 591
AsuHPI	GGTGA	2 cut(s)	318, 641
BaeGI	GKGCMC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	586
BanII	GRGCYC	2 cut(s)	265, 801
Bbv12I	GWGCWC	3 cut(s)	28, 601, 801
BbvI	GCAGC	2 cut(s)	126, 385
BccI	CCATC	2 cut(s)	385, 416
BciT130I	CCWGG	2 cut(s)	268, 746
BcnI	CCSGG	3 cut(s)	95, 296, 591
BcoDI	GTCTC	2 cut(s)	693, 721
BfaI	CTAG	2 cut(s)	114, 695
BfmI	CTRYAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	3 cut(s)	140, 374, 465
BlsI	GCNGC	3 cut(s)	141, 375, 466
Bme1390I	CCNGG	5 cut(s)	95, 268, 296, 591, 746
BmiI	GGNNCC	2 cut(s)	264, 588
BmrFI	CCNGG	5 cut(s)	95, 268, 296, 591, 746
BmsI	GCATC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	690, 722
Bpu10I	CCTNAGC	1 cut(s)	580
BpuMI	CCSGG	3 cut(s)	95, 296, 591
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	3 cut(s)	266, 267, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 42, 100
Bse1I	ACTGG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	268, 746
BseDI	CCNNGG	3 cut(s)	266, 267, 744
BseGI	GGATG	3 cut(s)	239, 427, 754
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	20, 42, 100
BseMII	CTCAG	3 cut(s)	157, 359, 594
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	4 cut(s)	58, 113, 323, 609
BseSI	GKGCMC	1 cut(s)	589
BseXI	GCAGC	2 cut(s)	126, 385
BshFI	GGCC	1 cut(s)	561
BshNI	GGYRCC	1 cut(s)	586
BsiHKAI	GWGCWC	3 cut(s)	28, 601, 801
BsiSI	CCGG	3 cut(s)	95, 296, 590
BslI	CCNNNNNNNGG	3 cut(s)	20, 42, 100
BsmAI	GTCTC	2 cut(s)	693, 721
BsnI	GGCC	1 cut(s)	561
Bsp1286I	GDGCHC	5 cut(s)	28, 265, 589, 601, 801
Bsp1407I	TGTACA	1 cut(s)	666
Bsp143I	GATC	5 cut(s)	62, 251, 388, 472, 478
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	3 cut(s)	156, 360, 593
BspLI	GGNNCC	2 cut(s)	264, 588
BspPI	GGATC	2 cut(s)	70, 383
BspQI	GCTCTTC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	586
BsrGI	TGTACA	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	266, 267, 744
BssMI	GATC	5 cut(s)	62, 251, 388, 472, 478
Bst2UI	CCWGG	2 cut(s)	268, 746
Bst4CI	ACNGT	3 cut(s)	344, 734, 848
Bst6I	CTCTTC	2 cut(s)	99, 366
BstAUI	TGTACA	1 cut(s)	666
BstC8I	GCNNGC	4 cut(s)	111, 559, 643, 810
BstDEI	CTNAG	3 cut(s)	143, 368, 580
BstEII	GGTNACC	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	239, 427, 754
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	5 cut(s)	65, 254, 391, 475, 481
BstMAI	GTCTC	2 cut(s)	693, 721
BstMBI	GATC	5 cut(s)	62, 251, 388, 472, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 461, 805
BstNI	CCWGG	2 cut(s)	268, 746
BstPI	GGTNACC	1 cut(s)	568
BstSCI	CCNGG	5 cut(s)	93, 266, 294, 589, 744
BstSFI	CTRYAG	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	589
BstV1I	GCAGC	2 cut(s)	126, 385
BstX2I	RGATCY	2 cut(s)	62, 388
BstYI	RGATCY	2 cut(s)	62, 388
BsuRI	GGCC	1 cut(s)	561
BtsCI	GGATG	3 cut(s)	239, 427, 754
Cac8I	GCNNGC	4 cut(s)	111, 559, 643, 810
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	667
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	3 cut(s)	119, 155, 649
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	143, 368, 580
DpnI	GATC	5 cut(s)	64, 253, 390, 474, 480
DpnII	GATC	5 cut(s)	62, 251, 388, 472, 478
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	99, 366
EarI	CTCTTC	2 cut(s)	99, 366
Ecl136II	GAGCTC	1 cut(s)	799
Eco24I	GRGCYC	2 cut(s)	265, 801
Eco32I	GATATC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	799
Eco57I	CTGAAG	2 cut(s)	99, 710
Eco91I	GGTNACC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	799
EcoO65I	GGTNACC	1 cut(s)	568
EcoRII	CCWGG	2 cut(s)	266, 744
EcoRV	GATATC	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	265, 801
FaeI	CATG	3 cut(s)	122, 158, 652
FatI	CATG	3 cut(s)	118, 154, 648
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	140, 374, 465
FokI	GGATG	3 cut(s)	226, 434, 761
FriOI	GRGCYC	2 cut(s)	265, 801
Fsp4HI	GCNGC	3 cut(s)	140, 374, 465
FspBI	CTAG	2 cut(s)	114, 695
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	3 cut(s)	140, 374, 465
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	3 cut(s)	95, 296, 590
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	122, 158, 652
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	2 cut(s)	434, 833
HpaII	CCGG	3 cut(s)	95, 296, 590
HphI	GGTGA	2 cut(s)	318, 641
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	3 cut(s)	146, 369, 430
Hpy188III	TCNNGA	2 cut(s)	305, 476
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	344, 734, 848
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	4 cut(s)	215, 395, 455, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 461, 805
HpyF3I	CTNAG	3 cut(s)	143, 368, 580
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	3 cut(s)	122, 158, 652
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	5 cut(s)	62, 251, 388, 472, 478
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	6 cut(s)	31, 37, 136, 268, 596, 796
Lsp1109I	GCAGC	2 cut(s)	126, 385
LweI	GCATC	1 cut(s)	648
MaeI	CTAG	2 cut(s)	114, 695
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	4 cut(s)	324, 568, 633, 817
MalI	GATC	5 cut(s)	64, 253, 390, 474, 480
MboI	GATC	5 cut(s)	62, 251, 388, 472, 478
MboII	GAAGA	5 cut(s)	116, 353, 398, 509, 787
MflI	RGATCY	2 cut(s)	62, 388
MhlI	GDGCHC	5 cut(s)	28, 265, 589, 601, 801
MluCI	AATT	3 cut(s)	396, 413, 438
MlyI	GAGTC	1 cut(s)	827
MseI	TTAA	5 cut(s)	84, 291, 402, 545, 762
MspA1I	CMGCKG	2 cut(s)	464, 641
MspI	CCGG	3 cut(s)	95, 296, 590
MspR9I	CCNGG	5 cut(s)	95, 268, 296, 591, 746
MvaI	CCWGG	2 cut(s)	268, 746
MwoI	GCNNNNNNNGC	3 cut(s)	119, 461, 805
NciI	CCSGG	3 cut(s)	95, 296, 591
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	5 cut(s)	62, 251, 388, 472, 478
NlaIII	CATG	3 cut(s)	122, 158, 652
NlaIV	GGNNCC	2 cut(s)	264, 588
NmuCI	GTSAC	2 cut(s)	324, 817
PasI	CCCWGGG	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	141, 375, 466
PleI	GAGTC	1 cut(s)	827
PpsI	GAGTC	1 cut(s)	827
PshBI	ATTAAT	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	801
Psp6I	CCWGG	2 cut(s)	266, 744
PspEI	GGTNACC	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	266, 744
PspN4I	GGNNCC	2 cut(s)	264, 588
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	62, 388
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
SacI	GAGCTC	1 cut(s)	801
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	84, 291, 402, 545, 762
SatI	GCNGC	3 cut(s)	140, 374, 465
Sau3AI	GATC	5 cut(s)	62, 251, 388, 472, 478
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	5 cut(s)	95, 268, 296, 591, 746
SduI	GDGCHC	5 cut(s)	28, 265, 589, 601, 801
SfaNI	GCATC	1 cut(s)	648
SfcI	CTRYAG	1 cut(s)	720
Sse9I	AATT	3 cut(s)	396, 413, 438
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	2 cut(s)	114, 695
SstI	GAGCTC	1 cut(s)	801
StyD4I	CCNGG	5 cut(s)	93, 266, 294, 589, 744
TaaI	ACNGT	3 cut(s)	344, 734, 848
TaiI	ACGT	1 cut(s)	151
TasI	AATT	3 cut(s)	396, 413, 438
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	5 cut(s)	84, 291, 402, 545, 762
Tru9I	TTAA	5 cut(s)	84, 291, 402, 545, 762
TseFI	GTSAC	2 cut(s)	324, 817
TseI	GCWGC	2 cut(s)	139, 373
Tsp45I	GTSAC	2 cut(s)	324, 817
TspDTI	ATGAA	7 cut(s)	40, 171, 399, 462, 509, 637, 743
TspGWI	ACGGA	2 cut(s)	623, 826
Van91I	CCANNNNNTGG	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XspI	CTAG	2 cut(s)	114, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.