Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003037

Physical Location & Seq

Genomic Coordinates Forward (+)

18767539 .. 18770591

Gene Structure 3053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G201300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGCCAGAACGAGCTCCCAGGAAGATGAGATTCATACCAAAAGCTCCCCGCAGAGTGCCAAAGCCTGAAGTCAAAACCGAAGTGGACCATGGGGCGGAGGAGTCTGATGCTGAAAAGGCTAAGGAATTGCTGAAACGCTTCAATGAACAATCATCAAGGGCGAGGCTCAAAGTTGAAAAGAAAGTGGTGCCTACGCAAATTGTATTTGGTTATGGTGGTGCATCAACAACCATGAAATCATATGGTGCTCCCAAAGGTGGGAGCGCTAGTTCAGCCACCAATGCTGGTGCCTCAGGCGTGAAAGAGGAGAAAGAATACAGTTCACCATGGGATCAATACAGTTATTACCCTGTAACTCTTCCTCTGAGACCGCCATATTCTGGAAATCCTGAGATTCGTAATGAGGAAGAATTTGGGGAGGGTTCAGAGGAATCAACTTATGATGAAAATTCAACAACACCAGCAAATGATCTTGGGCTATTGGAGGAAAATAAAGCAACAAGTATGTTCTTTCTTCAGTTACCGCCAAATATGCCTACAATAAAACGATCAGCTACAGCAGATAGTCAAGAGGTAACAAAAAGCTCAGGGCCACCTGGAGGTGCACGCAATATGCAGAAGCCTTGTTCTTTGTCCGAGTTACCCGCTGGCTTCATGGGTAAGATGCTGGTGTACAGGAGTGGTGCTGTCAAGATGAAGATAGGAGATAGCCTTTTTGATGTCTCCCCAGGAATGAATTGCGATTTCGCCCAGGATGTTGTGGTTGTTAATAAAGCAGAGAAAGGCTGTGGCATTATCGGGGAGCTGAACAAGCGAGCCATAATAACCCCAGATGTAGACTCCATTTTAGCAAGTATAGATGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002682 GO:0002684 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0008150 GO:0016604 GO:0016607 GO:0030880 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0080134 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpc4

Protein Analysis

291

Amino Acids

31.47

Weight (kDa)

5.78

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003037)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09380 AT5G09380 AT5G09380
fragaria_vesca	FvH4_1g08400 FvH4_1g08400 FvH4_7g27240 FvH4_7g27240
malus_domestica	MD01G1181300.v1.1 MD02G1088300.v1.1 MD07G1251400.v1.1
prunus_persica	Prupe.2G275200_v2.0.a1 Prupe.7G201300_v2.0.a1
pyrus_communis	pycom02g07090 pycom07g22410
rosa_chinensis	RchiOBHm_Chr1g0374021 RchiOBHm_Chr2g0094511 RchiOBHm_Chr3g0487921
rosa_laevigata	RLG00000016497 RLG00000026785
rosa_multiflora	Rmu_sc0004359.1_g000044 Rmu_sc0006924.1_g000006 Rmu_sc0009793.1_g000002
rosa_roxburghii	Rroxscaffold_2G00147110 Rroxscaffold_4G00283820
rosa_rugosa	Rorug01G0380300 Rorug02G0044300.1
rosa_samantha	Rh1AG390800 Rh1BG354900 Rh1CG368000 Rh1DG385600 Rh2AG092600 Rh2BG092800 Rh2CG095300 Rh2DG091700 Rh3AG285100 Rh6AG149200
rosa_wichuraiana	Rw1G034440 Rw6G012910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	190, 290
AccB7I	CCANNNNNTGG	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	840
AciI	CCGC	5 cut(s)	52, 98, 374, 527, 648
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	413, 451
AcuI	CTGAAG	2 cut(s)	90, 503
AfaI	GTAC	1 cut(s)	677
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	5 cut(s)	97, 260, 261, 383, 602
AgsI	TTSAA	3 cut(s)	145, 179, 456
AjnI	CCWGG	4 cut(s)	20, 598, 730, 753
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	5 cut(s)	17, 47, 557, 588, 808
AluI	AGCT	5 cut(s)	17, 47, 557, 588, 808
Alw21I	GWGCWC	3 cut(s)	19, 253, 610
Alw26I	GTCTC	2 cut(s)	364, 730
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	342
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	593
ApaLI	GTGCAC	1 cut(s)	606
ApoI	RAATTY	2 cut(s)	413, 451
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	88, 593
AsuHPI	GGTGA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	88
AxyI	CCTNAGG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	2 cut(s)	190, 290
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	3 cut(s)	19, 253, 610
BccI	CCATC	1 cut(s)	857
BciT130I	CCWGG	4 cut(s)	22, 600, 732, 755
BcoDI	GTCTC	2 cut(s)	364, 730
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	270
Bme1390I	CCNGG	4 cut(s)	22, 600, 732, 755
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 593
BmiI	GGNNCC	3 cut(s)	6, 192, 292
BmrFI	CCNGG	4 cut(s)	22, 600, 732, 755
BmsI	GCATC	3 cut(s)	100, 233, 657
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	2 cut(s)	123, 589
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	5 cut(s)	20, 91, 329, 730, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 260, 261, 383, 602
Bse21I	CCTNAGG	1 cut(s)	295
BseBI	CCWGG	4 cut(s)	22, 600, 732, 755
BseDI	CCNNGG	5 cut(s)	20, 91, 329, 730, 753
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	5 cut(s)	97, 260, 261, 383, 602
BseMII	CTCAG	4 cut(s)	309, 359, 384, 603
BseRI	GAGGAG	2 cut(s)	116, 323
BseSI	GKGCMC	1 cut(s)	610
BshFI	GGCC	1 cut(s)	595
BshNI	GGYRCC	2 cut(s)	190, 290
BsiHKAI	GWGCWC	3 cut(s)	19, 253, 610
BslI	CCNNNNNNNGG	5 cut(s)	97, 260, 261, 383, 602
BsmAI	GTCTC	2 cut(s)	364, 730
BsnI	GGCC	1 cut(s)	595
Bso31I	GGTCTC	1 cut(s)	364
Bsp1286I	GDGCHC	3 cut(s)	19, 253, 610
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	334, 472, 551
Bsp19I	CCATGG	2 cut(s)	91, 329
BspACI	CCGC	5 cut(s)	52, 98, 374, 527, 648
BspANI	GGCC	1 cut(s)	595
BspCNI	CTCAG	4 cut(s)	308, 360, 385, 602
BspLI	GGNNCC	3 cut(s)	6, 192, 292
BspPI	GGATC	1 cut(s)	342
BspT107I	GGYRCC	2 cut(s)	190, 290
BspTNI	GGTCTC	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	675
BssECI	CCNNGG	5 cut(s)	20, 91, 329, 730, 753
BssMI	GATC	3 cut(s)	334, 472, 551
BssT1I	CCWWGG	2 cut(s)	91, 329
Bst2UI	CCWGG	4 cut(s)	22, 600, 732, 755
Bst4CI	ACNGT	2 cut(s)	323, 344
Bst6I	CTCTTC	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	610, 652, 819
BstDEI	CTNAG	5 cut(s)	123, 295, 368, 393, 589
BstDSI	CCRYGG	2 cut(s)	91, 329
BstF5I	GGATG	1 cut(s)	763
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	337, 475, 554
BstMAI	GTCTC	2 cut(s)	364, 730
BstMBI	GATC	3 cut(s)	334, 472, 551
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 275, 284, 535, 814
BstNI	CCWGG	4 cut(s)	22, 600, 732, 755
BstSCI	CCNGG	4 cut(s)	20, 598, 730, 753
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	610
Bsu36I	CCTNAGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	595
BtgI	CCRYGG	2 cut(s)	91, 329
BtsCI	GGATG	1 cut(s)	763
Cac8I	GCNNGC	3 cut(s)	610, 652, 819
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	2 cut(s)	88, 593
Csp6I	GTAC	1 cut(s)	676
CviAII	CATG	4 cut(s)	92, 235, 330, 658
CviQI	GTAC	1 cut(s)	676
DdeI	CTNAG	5 cut(s)	123, 295, 368, 393, 589
DpnI	GATC	3 cut(s)	336, 474, 553
DpnII	GATC	3 cut(s)	334, 472, 551
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	91, 329
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	2 cut(s)	90, 503
Eco81I	CCTNAGG	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	4 cut(s)	20, 598, 730, 753
EcoT14I	CCWWGG	2 cut(s)	91, 329
EcoT38I	GRGCYC	1 cut(s)	19
ErhI	CCWWGG	2 cut(s)	91, 329
FaeI	CATG	4 cut(s)	95, 238, 333, 661
FatI	CATG	4 cut(s)	91, 234, 329, 657
FauI	CCCGC	2 cut(s)	59, 655
FauNDI	CATATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	840
FokI	GGATG	1 cut(s)	770
FriOI	GRGCYC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	595
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	95, 238, 333, 661
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	5 cut(s)	33, 104, 397, 434, 842
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	5 cut(s)	88, 326, 608, 676, 841
Hpy188I	TCNGA	4 cut(s)	109, 369, 430, 640
Hpy188III	TCNNGA	4 cut(s)	384, 392, 572, 694
Hpy8I	GTNNAC	5 cut(s)	88, 326, 608, 676, 841
HpyCH4III	ACNGT	2 cut(s)	323, 344
HpyCH4V	TGCA	3 cut(s)	224, 608, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 275, 284, 535, 814
HpyF3I	CTNAG	5 cut(s)	123, 295, 368, 393, 589
Hsp92II	CATG	4 cut(s)	95, 238, 333, 661
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	334, 472, 551
LmnI	GCTCC	6 cut(s)	4, 22, 52, 256, 264, 805
LweI	GCATC	3 cut(s)	100, 233, 657
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	355, 522, 577, 642
MalI	GATC	3 cut(s)	336, 474, 553
MboI	GATC	3 cut(s)	334, 472, 551
MboII	GAAGA	5 cut(s)	37, 353, 422, 509, 712
MhlI	GDGCHC	3 cut(s)	19, 253, 610
MluCI	AATT	5 cut(s)	128, 201, 413, 451, 739
MlyI	GAGTC	2 cut(s)	113, 836
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	650
MspR9I	CCNGG	4 cut(s)	22, 600, 732, 755
MvaI	CCWGG	4 cut(s)	22, 600, 732, 755
MwoI	GCNNNNNNNGC	5 cut(s)	119, 275, 284, 535, 814
NcoI	CCATGG	2 cut(s)	91, 329
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	3 cut(s)	334, 472, 551
NlaIII	CATG	4 cut(s)	95, 238, 333, 661
NlaIV	GGNNCC	3 cut(s)	6, 192, 292
PdmI	GAANNNNTTC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	33, 397, 434
PflMI	CCANNNNNTGG	1 cut(s)	383
PleI	GAGTC	2 cut(s)	112, 836
PpsI	GAGTC	2 cut(s)	112, 836
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	4 cut(s)	20, 598, 730, 753
PspGI	CCWGG	4 cut(s)	20, 598, 730, 753
PspN4I	GGNNCC	3 cut(s)	6, 192, 292
PspPI	GGNCC	2 cut(s)	88, 593
RsaI	GTAC	1 cut(s)	677
RsaNI	GTAC	1 cut(s)	676
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	771
Sau3AI	GATC	3 cut(s)	334, 472, 551
Sau96I	GGNCC	2 cut(s)	88, 593
SchI	GAGTC	2 cut(s)	113, 836
ScrFI	CCNGG	4 cut(s)	22, 600, 732, 755
SduI	GDGCHC	3 cut(s)	19, 253, 610
SetI	ASST	9 cut(s)	19, 49, 262, 559, 579, 590, 601, 607, 810
SfaNI	GCATC	3 cut(s)	100, 233, 657
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	5 cut(s)	128, 201, 413, 451, 739
SsiI	CCGC	5 cut(s)	52, 98, 374, 527, 648
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	4 cut(s)	20, 598, 730, 753
StyI	CCWWGG	2 cut(s)	91, 329
TaaI	ACNGT	2 cut(s)	323, 344
TasI	AATT	5 cut(s)	128, 201, 413, 451, 739
TatI	WGTACW	1 cut(s)	675
TfiI	GAWTC	3 cut(s)	33, 397, 434
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TspDTI	ATGAA	7 cut(s)	25, 162, 251, 462, 646, 713, 752
Van91I	CCANNNNNTGG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	2 cut(s)	413, 451
XmiI	GTMKAC	1 cut(s)	840
XmnI	GAANNNNTTC	1 cut(s)	140
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.