Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015107

Physical Location & Seq

Genomic Coordinates Reverse (-)

23564430 .. 23566590

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTGCTCTTTTTAGTCTACCATCTTCTAGCTTCTTGGCAAAGCCCCAAAGCTCCAAGCTTTCATCTGACTTTTCCAATTTCCTGAACCCATGTCAGAATTTGAGACCCATCTCGATTTCTATAAGACCCAGAAGCAAGGAGCATGGTGTGAAGATGTCCTGGGATGGTCCATTGTCTTCTGTCAAGCTGATCATACAGGGAAAGCACTTGGAGTTGACAGAACCAGTGAAGAAGCATGTGGAAGAAAAAGTTGGAAAGGCGATTCTAAAGCACAGCCACCTGGTGAGGGAAGCCGATGTTCGGTTGTCTGTTCGTGGTGGAGAGCAAAAAGGCCCAAAGATTAGAAGGTGTGAGGTCACTTTGTTCACCAAAAAGCATGGAGTGTTCCGGGCTGAGGAAGAAGGTGAGACACTTATTGCAAGCATAGATATGGCTTCTTCCATCATCCAGAGGAAGTTGAGGAAAATCAAGGAGAAGGAATCAGACCATGGCCGCCACATGAAAGGCTTTAACAGATTGAAAGTCAGGGAGGCACAACTCCCCGTGGAAGTGGAAGAATCAGGTCCCCAGGATGAAGAGGAAGACTTGTTGGATGAGGTTGTTCGTACAAAGTACTTCGACATGCCACCTTTGACAGTAGCTGAAGCAGTAGATCAACTGGAGAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAAATTAACATTCTATACAGAAGAAAGGAAGGAGGCTATGGGGTTATTATACCCAAAGGAAGTGGGAAAGCTAATAAGGTGGAGAATGTGGTGGTAGAACGTGCTTATGAACACACTGCGGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

280

Amino Acids

31.54

Weight (kDa)

7.79

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30AE	PF02482	65 - 160	2.1e-18	Sigma 54 modulation protein / S30EA ribosomal protein
Ribosom_S30AE_C	PF16321	199 - 252	5.6e-25	Sigma 54 modulation/S30EA ribosomal protein C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24490
fragaria_vesca	FvH4_7g32900
malus_domestica	MD07G1298900.v1.1
prunus_persica	Prupe.2G318800_v2.0.a1
pyrus_communis	pycom07g27140
rosa_chinensis	RchiOBHm_Chr1g0382861
rosa_laevigata	RLG00000026153
rosa_multiflora	Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii	Rroxscaffold_4G00277830
rosa_rugosa	Rorug01G0436900
rosa_samantha	Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana	Rw1G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	2 cut(s)	496, 830
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	666
AdeI	CACNNNGTG	1 cut(s)	286
AfaI	GTAC	2 cut(s)	610, 617
AfiI	CCNNNNNNNGG	3 cut(s)	289, 303, 397
AgsI	TTSAA	1 cut(s)	523
AjnI	CCWGG	3 cut(s)	161, 282, 570
AjuI	GAANNNNNNNTTGG	2 cut(s)	237, 269
AluBI	AGCT	6 cut(s)	33, 54, 61, 190, 644, 782
AluI	AGCT	6 cut(s)	33, 54, 61, 190, 644, 782
Alw26I	GTCTC	2 cut(s)	100, 404
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	334, 493
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	100
AspS9I	GGNCC	3 cut(s)	170, 335, 566
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	4 cut(s)	298, 361, 419, 722
AvaII	GGWCC	2 cut(s)	170, 566
BbsI	GAAGAC	2 cut(s)	171, 591
BbvCI	CCTCAGC	1 cut(s)	396
BccI	CCATC	4 cut(s)	31, 119, 161, 452
BciT130I	CCWGG	3 cut(s)	163, 284, 572
BclI	TGATCA	2 cut(s)	192, 673
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	2 cut(s)	100, 404
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	3 cut(s)	6, 496, 831
BlsI	GCNGC	3 cut(s)	7, 497, 832
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	4 cut(s)	163, 284, 392, 572
Bme18I	GGWCC	2 cut(s)	170, 566
BmgT120I	GGNCC	3 cut(s)	170, 335, 566
BmiI	GGNNCC	1 cut(s)	568
BmrFI	CCNGG	4 cut(s)	163, 284, 392, 572
BpiI	GAAGAC	2 cut(s)	171, 591
BpmI	CTGGAG	1 cut(s)	683
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	162, 490, 546, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 303, 397
Bse1I	ACTGG	3 cut(s)	227, 666, 712
BseBI	CCWGG	3 cut(s)	163, 284, 572
BseDI	CCNNGG	4 cut(s)	162, 490, 546, 570
BseGI	GGATG	4 cut(s)	172, 447, 580, 601
BseLI	CCNNNNNNNGG	3 cut(s)	289, 303, 397
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	227, 666, 712
BshFI	GGCC	2 cut(s)	336, 495
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	3 cut(s)	289, 303, 397
BsmAI	GTCTC	2 cut(s)	100, 404
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	336, 495
Bso31I	GGTCTC	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	192, 655, 673
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	2 cut(s)	496, 830
BspANI	GGCC	2 cut(s)	336, 495
BspCNI	CTCAG	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	227, 666, 712
BssECI	CCNNGG	4 cut(s)	162, 490, 546, 570
BssMI	GATC	3 cut(s)	192, 655, 673
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	3 cut(s)	163, 284, 572
Bst4CI	ACNGT	1 cut(s)	640
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	2 cut(s)	490, 546
BstF5I	GGATG	4 cut(s)	172, 447, 580, 601
BstKTI	GATC	3 cut(s)	195, 658, 676
BstMAI	GTCTC	2 cut(s)	100, 404
BstMBI	GATC	3 cut(s)	192, 655, 673
BstNI	CCWGG	3 cut(s)	163, 284, 572
BstNSI	RCATGY	2 cut(s)	242, 628
BstSCI	CCNGG	4 cut(s)	161, 282, 390, 570
BstV2I	GAAGAC	2 cut(s)	171, 591
BsuRI	GGCC	2 cut(s)	336, 495
BtgI	CCRYGG	2 cut(s)	490, 546
BtsCI	GGATG	4 cut(s)	172, 447, 580, 601
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	2 cut(s)	234, 825
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	3 cut(s)	170, 335, 566
CsiI	ACCWGGT	1 cut(s)	282
Csp6I	GTAC	2 cut(s)	609, 616
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	8 cut(s)	93, 146, 239, 380, 491, 502, 625, 677
CviQI	GTAC	2 cut(s)	609, 616
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	3 cut(s)	194, 657, 675
DpnII	GATC	3 cut(s)	192, 655, 673
DraIII	CACNNNGTG	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	170, 566
Eco57I	CTGAAG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	161, 282, 570
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	8 cut(s)	96, 149, 242, 383, 494, 505, 628, 680
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	8 cut(s)	92, 145, 238, 379, 490, 501, 624, 676
FbaI	TGATCA	2 cut(s)	192, 673
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	6, 496, 831
FokI	GGATG	4 cut(s)	179, 434, 587, 608
Fsp4HI	GCNGC	3 cut(s)	6, 496, 831
FspBI	CTAG	1 cut(s)	30
GluI	GCNGC	3 cut(s)	6, 496, 831
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	2 cut(s)	336, 495
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	8 cut(s)	96, 149, 242, 383, 494, 505, 628, 680
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	265, 482, 560
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	4 cut(s)	298, 361, 419, 722
Hpy166II	GTNNAC	3 cut(s)	20, 219, 369
Hpy188I	TCNGA	4 cut(s)	70, 99, 487, 695
Hpy188III	TCNNGA	4 cut(s)	85, 115, 451, 677
Hpy8I	GTNNAC	3 cut(s)	20, 219, 369
HpyAV	CCTTC	4 cut(s)	342, 398, 472, 734
HpyCH4III	ACNGT	1 cut(s)	640
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	1 cut(s)	422
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	8 cut(s)	96, 149, 242, 383, 494, 505, 628, 680
Ksp22I	TGATCA	2 cut(s)	192, 673
Kzo9I	GATC	3 cut(s)	192, 655, 673
LmnI	GCTCC	2 cut(s)	59, 142
MabI	ACCWGGT	1 cut(s)	282
MaeI	CTAG	1 cut(s)	30
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	3 cut(s)	194, 657, 675
MboI	GATC	3 cut(s)	192, 655, 673
MluCI	AATT	3 cut(s)	79, 100, 714
MmeI	TCCRAC	2 cut(s)	235, 573
MnlI	CCTC	9 cut(s)	282, 349, 391, 447, 456, 526, 574, 592, 737
MseI	TTAA	2 cut(s)	513, 717
MslI	CAYNNNNRTG	1 cut(s)	431
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	4 cut(s)	163, 284, 392, 572
MvaI	CCWGG	3 cut(s)	163, 284, 572
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	3 cut(s)	192, 655, 673
NlaIII	CATG	8 cut(s)	96, 149, 242, 383, 494, 505, 628, 680
NlaIV	GGNNCC	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	2 cut(s)	242, 628
PagI	TCATGA	1 cut(s)	676
PfeI	GAWTC	3 cut(s)	265, 482, 560
PkrI	GCNGC	3 cut(s)	7, 497, 832
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	161, 282, 570
PspGI	CCWGG	3 cut(s)	161, 282, 570
PspN4I	GGNNCC	1 cut(s)	568
PspPI	GGNCC	3 cut(s)	170, 335, 566
PspPPI	RGGWCCY	1 cut(s)	566
PstNI	CAGNNNCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	610, 617
RsaNI	GTAC	2 cut(s)	609, 616
RseI	CAYNNNNRTG	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	513, 717
SatI	GCNGC	3 cut(s)	6, 496, 831
Sau3AI	GATC	3 cut(s)	192, 655, 673
Sau96I	GGNCC	3 cut(s)	170, 335, 566
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	4 cut(s)	163, 284, 392, 572
SexAI	ACCWGGT	1 cut(s)	282
SinI	GGWCC	2 cut(s)	170, 566
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	79, 100, 714
SsiI	CCGC	2 cut(s)	496, 830
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	161, 282, 390, 570
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	640
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	2 cut(s)	116, 621
TasI	AATT	3 cut(s)	79, 100, 714
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	498, 833
TfiI	GAWTC	3 cut(s)	265, 482, 560
Tru1I	TTAA	2 cut(s)	513, 717
Tru9I	TTAA	2 cut(s)	513, 717
TscAI	CASTG	2 cut(s)	234, 832
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	5 cut(s)	54, 518, 591, 714, 834
TspRI	CASTG	2 cut(s)	234, 832
VpaK11BI	GGWCC	2 cut(s)	170, 566
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	2 cut(s)	242, 628
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	30
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.