Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015107

Physical Location & Seq

Genomic Coordinates Reverse (-)

35826960 .. 35831462

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1298900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGACTCTGTTTACTTCTCCACAATCAATGGCAACACTCTCATCACCGATTTTCCAAAAGCCCCAAATCTTCACATTATCGTCTAGCTCTTCCAATTTCTTGAATCCGTCGAAGAATCTGAAACCCATTGCGATTGCGATTCGACCCCGAAAATGGCGCGGCAAGTCGCTCTCCGTGCAGATGTCCTGGGACGGCCCGCTCTCCTCGGTCAAGCTGATCATACAAGGAAAGAATTTGGAGTTGTCGGAGGCAGTGAAGAAGCATGTGGAAGACAAGGTTGGGAAGGCGGTTCAAAAGCATAGTCACCTAGTGAGGGAAGCCGATGTTCGGTTGTCTGTTCGAGGTGGAGAGCTTGGAAAAGGCCCCAGGATTCGGAGATGTGAGGTGACTTTGTTCACGAAGAAGCATGGAGTGTTCCGAGCTGAGGAAGAAGCTGAGACACTTTACGCGAGCATAGATTTGGCATCTTCGATTATCCAGAGGAAGTTGAGGAAAATCAAGGAGAAGGAATCGGATCATGGGCGGCACATGAAAGGCTTTAACAGATCGAAAGTTAGGGAGCCTGCAATGCAAGTAGTGGCGGAAGATGAAGAGGAAGAGGCGGTTCCCCAAGAGCAGGAAGAAGACTTCATTGACGAGGTTGTTCGAACAAAATACTTTGACATGCCGCCTTTGACAGTTGCTGAAGCGGTTGATCAACTGGAAAATGTTGATCACGACTTCTATGCTTTCCGAAATGAAGAAACTGGTGAGATTAATGTCATATACAAACGAGAAGAAGGAGGTTATGGACTTATTATACCGAAAGGAAATGGTAAAGCGGAGAAGTCAGAGCACGTGGTGGTAGAGCGAGCTAGAGAACGCTCCTTGGCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

294

Amino Acids

33.15

Weight (kDa)

7.82

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30AE	PF02482	74 - 170	9.5e-21	Sigma 54 modulation protein / S30EA ribosomal protein
Ribosom_S30AE_C	PF16321	213 - 266	7.5e-25	Sigma 54 modulation/S30EA ribosomal protein C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24490
fragaria_vesca	FvH4_7g32900
malus_domestica	MD07G1298900.v1.1
prunus_persica	Prupe.2G318800_v2.0.a1
pyrus_communis	pycom07g27140
rosa_chinensis	RchiOBHm_Chr1g0382861
rosa_laevigata	RLG00000026153
rosa_multiflora	Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii	Rroxscaffold_4G00277830
rosa_rugosa	Rorug01G0436900
rosa_samantha	Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana	Rw1G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	202
AccII	CGCG	2 cut(s)	162, 452
AclWI	GGATC	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	708
AcvI	CACGTG	1 cut(s)	841
AdeI	CACNNNGTG	2 cut(s)	313, 844
AfiI	CCNNNNNNNGG	6 cut(s)	156, 316, 330, 375, 427, 619
AgsI	TTSAA	2 cut(s)	106, 296
AjnI	CCWGG	2 cut(s)	188, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	6 cut(s)	90, 217, 355, 425, 437, 857
AluI	AGCT	6 cut(s)	90, 217, 355, 425, 437, 857
Alw21I	GWGCWC	1 cut(s)	840
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	525
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	196, 364
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AseI	ATTAAT	1 cut(s)	759
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	197, 365
AsuHPI	GGTGA	4 cut(s)	39, 299, 400, 764
AsuII	TTCGAA	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	841
BbsI	GAAGAC	2 cut(s)	279, 633
Bbv12I	GWGCWC	1 cut(s)	840
BbvCI	CCTCAGC	1 cut(s)	426
BceAI	ACGGC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	710, 744
BciT130I	CCWGG	2 cut(s)	190, 370
BclI	TGATCA	3 cut(s)	219, 697, 715
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	87, 311, 858
BisI	GCNGC	3 cut(s)	163, 527, 671
BlsI	GCNGC	3 cut(s)	164, 528, 672
Bme1390I	CCNGG	2 cut(s)	190, 370
BmgT120I	GGNCC	2 cut(s)	197, 365
BmiI	GGNNCC	3 cut(s)	367, 564, 609
BmrFI	CCNGG	2 cut(s)	190, 370
BmsI	GCATC	1 cut(s)	476
BpiI	GAAGAC	2 cut(s)	279, 633
Bpu10I	CCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	841
BsaJI	CCNNGG	4 cut(s)	189, 207, 368, 870
Bsc4I	CCNNNNNNNGG	6 cut(s)	156, 316, 330, 375, 427, 619
Bse1I	ACTGG	2 cut(s)	708, 754
Bse3DI	GCAATG	2 cut(s)	129, 576
BseBI	CCWGG	2 cut(s)	190, 370
BseDI	CCNNGG	4 cut(s)	189, 207, 368, 870
BseLI	CCNNNNNNNGG	6 cut(s)	156, 316, 330, 375, 427, 619
BseMI	GCAATG	2 cut(s)	129, 576
BseMII	CTCAG	2 cut(s)	417, 429
BseNI	ACTGG	2 cut(s)	708, 754
BseRI	GAGGAG	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	162, 452
BshFI	GGCC	2 cut(s)	198, 366
BsiHKAI	GWGCWC	1 cut(s)	840
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	6 cut(s)	156, 316, 330, 375, 427, 619
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	198, 366
Bsp119I	TTCGAA	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	5 cut(s)	219, 517, 548, 697, 715
BspANI	GGCC	2 cut(s)	198, 366
BspCNI	CTCAG	2 cut(s)	418, 430
BspFNI	CGCG	2 cut(s)	162, 452
BspLI	GGNNCC	3 cut(s)	367, 564, 609
BspPI	GGATC	1 cut(s)	525
BspQI	GCTCTTC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	649
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	129, 576
BsrI	ACTGG	2 cut(s)	708, 754
BssECI	CCNNGG	4 cut(s)	189, 207, 368, 870
BssMI	GATC	5 cut(s)	219, 517, 548, 697, 715
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	190, 370
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	3 cut(s)	97, 588, 594
BstBAI	YACGTR	1 cut(s)	841
BstBI	TTCGAA	1 cut(s)	649
BstC8I	GCNNGC	4 cut(s)	200, 454, 567, 855
BstDEI	CTNAG	2 cut(s)	426, 438
BstFNI	CGCG	2 cut(s)	162, 452
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	5 cut(s)	222, 520, 551, 700, 718
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	5 cut(s)	219, 517, 548, 697, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 571
BstNI	CCWGG	2 cut(s)	190, 370
BstNSI	RCATGY	2 cut(s)	269, 670
BstSCI	CCNGG	2 cut(s)	188, 368
BstUI	CGCG	2 cut(s)	162, 452
BstV2I	GAAGAC	2 cut(s)	279, 633
BsuRI	GGCC	2 cut(s)	198, 366
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	4 cut(s)	200, 454, 567, 855
CaiI	CAGNNNCTG	1 cut(s)	686
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	2 cut(s)	197, 365
CviAII	CATG	5 cut(s)	266, 410, 521, 532, 667
DdeI	CTNAG	2 cut(s)	426, 438
DpnI	GATC	5 cut(s)	221, 519, 550, 699, 717
DpnII	GATC	5 cut(s)	219, 517, 548, 697, 715
DraIII	CACNNNGTG	2 cut(s)	313, 844
Eam1104I	CTCTTC	3 cut(s)	97, 588, 594
EarI	CTCTTC	3 cut(s)	97, 588, 594
EciI	GGCGGA	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	708
Eco72I	CACGTG	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	188, 368
EcoT14I	CCWWGG	1 cut(s)	870
ErhI	CCWWGG	1 cut(s)	870
FaeI	CATG	5 cut(s)	269, 413, 524, 535, 670
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	265, 409, 520, 531, 666
FauI	CCCGC	1 cut(s)	207
FbaI	TGATCA	3 cut(s)	219, 697, 715
Fnu4HI	GCNGC	3 cut(s)	163, 527, 671
Fsp4HI	GCNGC	3 cut(s)	163, 527, 671
FspBI	CTAG	3 cut(s)	87, 311, 858
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	3 cut(s)	163, 527, 671
HaeIII	GGCC	2 cut(s)	198, 366
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	5 cut(s)	269, 413, 524, 535, 670
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	6 cut(s)	7, 106, 118, 142, 373, 512
HphI	GGTGA	4 cut(s)	39, 299, 400, 764
Hpy166II	GTNNAC	2 cut(s)	15, 399
Hpy188I	TCNGA	7 cut(s)	123, 250, 378, 422, 517, 737, 835
Hpy188III	TCNNGA	4 cut(s)	103, 400, 481, 719
Hpy8I	GTNNAC	2 cut(s)	15, 399
Hpy99I	CGWCG	1 cut(s)	115
HpyAV	CCTTC	3 cut(s)	280, 502, 776
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	840
HpyCH4V	TGCA	3 cut(s)	181, 569, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 571
HpyF3I	CTNAG	2 cut(s)	426, 438
HpySE526I	ACGT	1 cut(s)	840
Hsp92II	CATG	5 cut(s)	269, 413, 524, 535, 670
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	3 cut(s)	219, 697, 715
Kzo9I	GATC	5 cut(s)	219, 517, 548, 697, 715
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	562, 872
LpnPI	CCDG	9 cut(s)	175, 202, 355, 382, 494, 579, 605, 689, 735
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	3 cut(s)	87, 311, 858
MaeII	ACGT	1 cut(s)	840
MaeIII	GTNAC	2 cut(s)	305, 388
MalI	GATC	5 cut(s)	221, 519, 550, 699, 717
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	5 cut(s)	219, 517, 548, 697, 715
MhlI	GDGCHC	1 cut(s)	840
MluCI	AATT	2 cut(s)	97, 235
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	2 cut(s)	543, 759
MspR9I	CCNGG	2 cut(s)	190, 370
MvaI	CCWGG	2 cut(s)	190, 370
MvnI	CGCG	2 cut(s)	162, 452
MwoI	GCNNNNNNNGC	2 cut(s)	178, 571
NdeII	GATC	5 cut(s)	219, 517, 548, 697, 715
NlaIII	CATG	5 cut(s)	269, 413, 524, 535, 670
NlaIV	GGNNCC	3 cut(s)	367, 564, 609
NmuCI	GTSAC	2 cut(s)	305, 388
NspI	RCATGY	2 cut(s)	269, 670
NspV	TTCGAA	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	97
PfeI	GAWTC	5 cut(s)	106, 118, 142, 373, 512
PkrI	GCNGC	3 cut(s)	164, 528, 672
PmaCI	CACGTG	1 cut(s)	841
PmlI	CACGTG	1 cut(s)	841
Ppu21I	YACGTR	1 cut(s)	841
PshBI	ATTAAT	1 cut(s)	759
Psp6I	CCWGG	2 cut(s)	188, 368
PspCI	CACGTG	1 cut(s)	841
PspGI	CCWGG	2 cut(s)	188, 368
PspN4I	GGNNCC	3 cut(s)	367, 564, 609
PspPI	GGNCC	2 cut(s)	197, 365
PstNI	CAGNNNCTG	1 cut(s)	686
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	543, 759
SatI	GCNGC	3 cut(s)	163, 527, 671
Sau3AI	GATC	5 cut(s)	219, 517, 548, 697, 715
Sau96I	GGNCC	2 cut(s)	197, 365
ScrFI	CCNGG	2 cut(s)	190, 370
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	1 cut(s)	476
SfuI	TTCGAA	1 cut(s)	649
Sse9I	AATT	2 cut(s)	97, 235
SspMI	CTAG	3 cut(s)	87, 311, 858
StyD4I	CCNGG	2 cut(s)	188, 368
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	843
TaqI	TCGA	6 cut(s)	113, 145, 343, 473, 551, 649
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	2 cut(s)	97, 235
TauI	GCSGC	3 cut(s)	165, 529, 673
TfiI	GAWTC	5 cut(s)	106, 118, 142, 373, 512
Tru1I	TTAA	2 cut(s)	543, 759
Tru9I	TTAA	2 cut(s)	543, 759
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	305, 388
Tsp45I	GTSAC	2 cut(s)	305, 388
TspDTI	ATGAA	4 cut(s)	548, 606, 622, 756
TspGWI	ACGGA	2 cut(s)	99, 166
TspRI	CASTG	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	2 cut(s)	269, 670
XspI	CTAG	3 cut(s)	87, 311, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.