RchiOBHm_Chr1g0382861

Ribosome-binding factor PSRP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015107
Physical Location & Seq
Reverse (-)
67459028 .. 67461464
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60580

Sequence Viewer

Length: 882 bp
ATGGCTACTCTTTTTACTTCTTCTTCATCTTCTTCTTTGTTTCAATCAATGGCTACTCTACCATCAACCTTTTTGGCAAAGCCCCAACTCTCCAAGCTCTCATCTGACTCCTCTAATTTCTTGAACACATGTAAGAATTTGAGACCCATTTCGATTGCGATCAGACCCAGAAACAAGGATTATGGTGTAAAGATGTCATGGGATGGTCCACTTTCTTCGGTCAAGTTGATCATACAGGGAAAGCATTTGGAGTTGACAGAACCAATCAAGAAGCATGTGGAAGACAAAGTTGGAAAGGCAATCTCAAAGCACAGTCACCTGGTGAGGGAAGCTGATATTCGGTTGTCTGTTCGAGGTGGAGACCTTGGAAAAGGCCCAAAGATCAGGAGATGTGAGGTCACTTTGTTCACAAAGAAGCATGGAGTGTTCAGGGCCGAGGAAGAAGGGGAGACGCTTATTGCTAGCATAGATCTGGCAGCTTCTATCATCCAGAGGAAGTTGAGGAAAATCAAGGAGAAGGTATCAGATCATGGCCGTCACATGAAAGGCTTTAACAGATTGAAAGTCAGGGAGGCTCAAATACCTGTGGAAGTGGAAGAAGAAGATCCCCAGGAGGAGGAGGAGGAAGACTTATTGGATGAGGTTGTCCGTACAAAATACTTCGACATGCCACCTTTGACAGTCGCTGAAGCAGTAGATCAACTGGAAAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAGATTAACATCCTATACAGAAGAAAAACAGGAGGCTATGGGGTTATTATACCCAAAGGAAGTGGGAAAGCTGATAAAGTGGAGAATGGGGTGGTAGAACGAGCTAGAGAAGCTTCCATGGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

293

Amino Acids

32.9

Weight (kDa)

7.76

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30AE PF02482 77 - 174 6e-19 Sigma 54 modulation protein / S30EA ribosomal protein
Ribosom_S30AE_C PF16321 213 - 266 1.1e-24 Sigma 54 modulation/S30EA ribosomal protein C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24490
fragaria_vesca FvH4_7g32900
malus_domestica MD07G1298900.v1.1
prunus_persica Prupe.2G318800_v2.0.a1
pyrus_communis pycom07g27140
rosa_chinensis RchiOBHm_Chr1g0382861
rosa_laevigata RLG00000026153
rosa_multiflora Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii Rroxscaffold_4G00277830
rosa_rugosa Rorug01G0436900
rosa_samantha Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana Rw1G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 708
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 2 cut(s) 325, 616
AflIII ACRYGT 1 cut(s) 128
AgsI TTSAA 3 cut(s) 44, 124, 562
AjnI CCWGG 2 cut(s) 318, 609
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 6 cut(s) 97, 332, 479, 824, 857, 866
AluI AGCT 6 cut(s) 97, 332, 479, 824, 857, 866
Alw26I GTCTC 3 cut(s) 136, 354, 443
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 1 cut(s) 686
AoxI GGCC 3 cut(s) 373, 432, 532
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 206, 374, 432
AsuHPI GGTGA 3 cut(s) 308, 334, 764
AsuNHI GCTAGC 1 cut(s) 461
AvaII GGWCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 288, 633
BbvI GCAGC 1 cut(s) 488
BccI CCATC 2 cut(s) 70, 197
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 320, 611
BclI TGATCA 2 cut(s) 228, 715
BcoDI GTCTC 3 cut(s) 136, 354, 443
BfaI CTAG 2 cut(s) 462, 858
BglII AGATCT 1 cut(s) 469
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 320, 611
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 3 cut(s) 206, 374, 432
BmrFI CCNGG 2 cut(s) 320, 611
BmtI GCTAGC 1 cut(s) 465
BpiI GAAGAC 2 cut(s) 288, 633
BsaBI GATNNNNATC 2 cut(s) 158, 761
BsaI GGTCTC 2 cut(s) 136, 354
BsaJI CCNNGG 4 cut(s) 364, 435, 609, 870
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 616
Bse1I ACTGG 2 cut(s) 708, 754
Bse8I GATNNNNATC 2 cut(s) 158, 761
BseBI CCWGG 2 cut(s) 320, 611
BseDI CCNNGG 4 cut(s) 364, 435, 609, 870
BseGI GGATG 4 cut(s) 208, 486, 643, 762
BseJI GATNNNNATC 2 cut(s) 158, 761
BseLI CCNNNNNNNGG 2 cut(s) 325, 616
BseNI ACTGG 2 cut(s) 708, 754
BseRI GAGGAG 4 cut(s) 100, 629, 632, 635
BseXI GCAGC 1 cut(s) 488
BshFI GGCC 3 cut(s) 375, 434, 534
BslI CCNNNNNNNGG 2 cut(s) 325, 616
BsmAI GTCTC 3 cut(s) 136, 354, 443
BsmBI CGTCTC 1 cut(s) 443
BsnI GGCC 3 cut(s) 375, 434, 534
Bso31I GGTCTC 2 cut(s) 136, 354
Bsp143I GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
Bsp19I CCATGG 1 cut(s) 870
BspANI GGCC 3 cut(s) 375, 434, 534
BspHI TCATGA 1 cut(s) 718
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 1 cut(s) 599
BspTNI GGTCTC 2 cut(s) 136, 354
BsrI ACTGG 2 cut(s) 708, 754
BssECI CCNNGG 4 cut(s) 364, 435, 609, 870
BssMI GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
BssT1I CCWWGG 2 cut(s) 364, 870
Bst2UI CCWGG 2 cut(s) 320, 611
Bst4CI ACNGT 2 cut(s) 314, 682
BstC8I GCNNGC 1 cut(s) 463
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 4 cut(s) 208, 486, 643, 762
BstKTI GATC 8 cut(s) 162, 231, 384, 472, 529, 607, 700, 718
BstMAI GTCTC 3 cut(s) 136, 354, 443
BstMBI GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
BstMWI GCNNNNNNNGC 2 cut(s) 863, 872
BstNI CCWGG 2 cut(s) 320, 611
BstNSI RCATGY 3 cut(s) 132, 278, 670
BstSCI CCNGG 2 cut(s) 318, 609
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 2 cut(s) 288, 633
BstX2I RGATCY 2 cut(s) 469, 604
BstYI RGATCY 2 cut(s) 469, 604
BsuRI GGCC 3 cut(s) 375, 434, 534
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 4 cut(s) 208, 486, 643, 762
Cac8I GCNNGC 1 cut(s) 463
CaiI CAGNNNCTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 206, 374, 432
CseI GACGC 1 cut(s) 460
CsiI ACCWGGT 1 cut(s) 318
Csp6I GTAC 1 cut(s) 651
CspCI CAANNNNNGTGG 2 cut(s) 796, 831
CviAII CATG 9 cut(s) 129, 198, 275, 419, 530, 541, 667, 719, 871
CviQI GTAC 1 cut(s) 651
DpnI GATC 8 cut(s) 161, 230, 383, 471, 528, 606, 699, 717
DpnII GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
DraIII CACNNNGTG 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 364, 870
Eco31I GGTCTC 2 cut(s) 136, 354
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 708
EcoRII CCWGG 2 cut(s) 318, 609
EcoT14I CCWWGG 2 cut(s) 364, 870
ErhI CCWWGG 2 cut(s) 364, 870
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 9 cut(s) 132, 201, 278, 422, 533, 544, 670, 722, 874
FatI CATG 9 cut(s) 128, 197, 274, 418, 529, 540, 666, 718, 870
FbaI TGATCA 2 cut(s) 228, 715
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 4 cut(s) 215, 473, 650, 749
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 462, 858
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 3 cut(s) 375, 434, 534
HgaI GACGC 1 cut(s) 460
Hin1II CATG 9 cut(s) 132, 201, 278, 422, 533, 544, 670, 722, 874
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 1 cut(s) 864
HinfI GANTC 1 cut(s) 107
HphI GGTGA 3 cut(s) 308, 334, 764
Hpy166II GTNNAC 3 cut(s) 209, 255, 408
Hpy188I TCNGA 4 cut(s) 106, 164, 526, 737
Hpy188III TCNNGA 5 cut(s) 121, 268, 385, 490, 719
Hpy8I GTNNAC 3 cut(s) 209, 255, 408
HpyAV CCTTC 2 cut(s) 437, 511
HpyCH4III ACNGT 2 cut(s) 314, 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 863, 872
Hsp92II CATG 9 cut(s) 132, 201, 278, 422, 533, 544, 670, 722, 874
Ksp22I TGATCA 2 cut(s) 228, 715
Kzo9I GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
Lsp1109I GCAGC 1 cut(s) 488
MabI ACCWGGT 1 cut(s) 318
MaeI CTAG 2 cut(s) 462, 858
MaeIII GTNAC 3 cut(s) 314, 397, 536
MalI GATC 8 cut(s) 161, 230, 383, 471, 528, 606, 699, 717
MboI GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
MflI RGATCY 2 cut(s) 469, 604
MluCI AATT 2 cut(s) 115, 136
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 271
MseI TTAA 2 cut(s) 552, 759
MspR9I CCNGG 2 cut(s) 320, 611
MvaI CCWGG 2 cut(s) 320, 611
MwoI GCNNNNNNNGC 2 cut(s) 863, 872
NcoI CCATGG 1 cut(s) 870
NdeII GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 9 cut(s) 132, 201, 278, 422, 533, 544, 670, 722, 874
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 314, 397, 536
NspI RCATGY 3 cut(s) 132, 278, 670
PagI TCATGA 1 cut(s) 718
PciI ACATGT 1 cut(s) 128
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
PscI ACATGT 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 318, 609
PspGI CCWGG 2 cut(s) 318, 609
PspPI GGNCC 3 cut(s) 206, 374, 432
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 2 cut(s) 469, 604
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SaqAI TTAA 2 cut(s) 552, 759
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 8 cut(s) 159, 228, 381, 469, 526, 604, 697, 715
Sau96I GGNCC 3 cut(s) 206, 374, 432
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 320, 611
SexAI ACCWGGT 1 cut(s) 318
SinI GGWCC 1 cut(s) 206
Sse9I AATT 2 cut(s) 115, 136
SspMI CTAG 2 cut(s) 462, 858
StyD4I CCNGG 2 cut(s) 318, 609
StyI CCWWGG 2 cut(s) 364, 870
TaaI ACNGT 2 cut(s) 314, 682
TaqI TCGA 3 cut(s) 152, 352, 663
TaqII GACCGA 1 cut(s) 208
TasI AATT 2 cut(s) 115, 136
Tru1I TTAA 2 cut(s) 552, 759
Tru9I TTAA 2 cut(s) 552, 759
TseFI GTSAC 3 cut(s) 314, 397, 536
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 3 cut(s) 314, 397, 536
TspDTI ATGAA 3 cut(s) 15, 557, 756
TspGWI ACGGA 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 136
XceI RCATGY 3 cut(s) 132, 278, 670
XspI CTAG 2 cut(s) 462, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.