Rorug01G0436900

Ribosome-binding factor PSRP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015107
Physical Location & Seq
Forward (+)
53564689 .. 53565710
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0436900.1

Sequence Viewer

Length: 564 bp
ATGGGTTGCAAGATAAACAACTCAAACCCTCCAATTCTTTGGAAGATCCCAACCAAGCAGCAGAGGCCTAGAACAAAAACCATCTCCTTCTCTTCCACCACCACAGACTCTCAAACCCAATATCAAAACTCTAAGCTTTACACTGTCAAGTTCAAGACCTTGAGCGCCTGCAAGCTTGGCATAGCCAGATATCCCGATTTTGAATACAATGCTGAAGGTGGCGGAGGAACCGGGTCTGGAACAACAGGAAGCAGCAACTCGAGTGGTGAAGTTTCAGTGTCATTTGACATTGAAACACTCTACATCCCACCATTGCAGACTTCAACAACAAAGTTTCTTGGATTGCCATTGCCACCGTTTTTGAAGATTGACATTGTCCCGGAGCTTTTTCGTGGCAGCATCAATCAAGAATCCGGCAAGGTTGATCTTGAGTTCAAGGCCAAGTTCTGGTTTTCGGTTGGAAGCATCTATAGAGCTCCTCCGCTTGTAGTGGAGACGGTTTTGACATCTGAGGAATCGAAAGGAACAATGAGAAGTGGAAAGGGGAGAGGTTGGATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

187

Amino Acids

20.52

Weight (kDa)

9.44

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24490
fragaria_vesca FvH4_7g32900
malus_domestica MD07G1298900.v1.1
prunus_persica Prupe.2G318800_v2.0.a1
pyrus_communis pycom07g27140
rosa_chinensis RchiOBHm_Chr1g0382861
rosa_laevigata RLG00000026153
rosa_multiflora Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii Rroxscaffold_4G00277830
rosa_rugosa Rorug01G0436900
rosa_samantha Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana Rw1G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AciI CCGC 2 cut(s) 222, 482
AclWI GGATC 1 cut(s) 40
AcuI CTGAAG 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 6 cut(s) 154, 203, 293, 324, 364, 436
AluBI AGCT 4 cut(s) 136, 175, 385, 476
AluI AGCT 4 cut(s) 136, 175, 385, 476
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 2 cut(s) 65, 438
ApeKI GCWGC 3 cut(s) 58, 252, 396
AspLEI GCGC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 232, 380
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 478
BbvI GCAGC 3 cut(s) 70, 264, 408
BccI CCATC 1 cut(s) 89
BcnI CCSGG 2 cut(s) 232, 380
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 69, 562
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 3 cut(s) 59, 253, 397
BlsI GCNGC 3 cut(s) 60, 254, 398
Bme1390I CCNGG 2 cut(s) 232, 380
BmeT110I CYCGRG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 2 cut(s) 232, 380
BmsI GCATC 2 cut(s) 408, 474
BpuEI CTTGAG 2 cut(s) 181, 449
BpuMI CCSGG 2 cut(s) 232, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse3DI GCAATG 2 cut(s) 311, 347
BseGI GGATG 2 cut(s) 303, 561
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMI GCAATG 2 cut(s) 311, 347
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 3 cut(s) 70, 264, 408
BshFI GGCC 2 cut(s) 67, 440
BsiHKAI GWGCWC 1 cut(s) 478
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 3 cut(s) 231, 380, 414
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 1 cut(s) 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 2 cut(s) 67, 440
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 478
Bsp143I GATC 2 cut(s) 45, 424
BspACI CCGC 2 cut(s) 222, 482
BspANI GGCC 2 cut(s) 67, 440
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 40
BsrDI GCAATG 2 cut(s) 311, 347
BssMI GATC 2 cut(s) 45, 424
Bst4CI ACNGT 3 cut(s) 145, 357, 499
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 169, 173
BstDEI CTNAG 2 cut(s) 132, 510
BstF5I GGATG 2 cut(s) 303, 561
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 2 cut(s) 48, 427
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 2 cut(s) 45, 424
BstMWI GCNNNNNNNGC 2 cut(s) 64, 177
BstSCI CCNGG 2 cut(s) 230, 378
BstSFI CTRYAG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 70, 264, 408
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 39
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 2 cut(s) 67, 440
BtsCI GGATG 2 cut(s) 303, 561
BtsIMutI CAGTG 2 cut(s) 141, 282
Cac8I GCNNGC 2 cut(s) 169, 173
CfoI GCGC 1 cut(s) 167
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 342, 377
CviJI RGCY 7 cut(s) 67, 136, 175, 185, 385, 440, 476
CviKI_1 RGCY 7 cut(s) 67, 136, 175, 185, 385, 440, 476
DdeI CTNAG 2 cut(s) 132, 510
DpnI GATC 2 cut(s) 47, 426
DpnII GATC 2 cut(s) 45, 424
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EciI GGCGGA 1 cut(s) 237
Ecl136II GAGCTC 1 cut(s) 476
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 478
Eco32I GATATC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 476
EcoRV GATATC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 488
FaiI YATR 2 cut(s) 182, 471
FaqI GGGAC 1 cut(s) 362
Fnu4HI GCNGC 3 cut(s) 59, 253, 397
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 3 cut(s) 59, 253, 397
FspBI CTAG 2 cut(s) 69, 562
GlaI GCGC 1 cut(s) 166
GluI GCNGC 3 cut(s) 59, 253, 397
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 2 cut(s) 67, 440
HapII CCGG 3 cut(s) 231, 380, 414
HhaI GCGC 1 cut(s) 167
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 134, 173
HinfI GANTC 3 cut(s) 107, 410, 515
HpaII CCGG 3 cut(s) 231, 380, 414
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 5 cut(s) 154, 194, 237, 407, 428
HpyAV CCTTC 2 cut(s) 97, 209
HpyCH4III ACNGT 3 cut(s) 145, 357, 499
HpyCH4V TGCA 3 cut(s) 9, 171, 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 177
HpyF3I CTNAG 2 cut(s) 132, 510
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 2 cut(s) 45, 424
LmnI GCTCC 2 cut(s) 382, 481
LpnPI CCDG 8 cut(s) 181, 199, 222, 231, 244, 393, 427, 433
Lsp1109I GCAGC 3 cut(s) 70, 264, 408
LweI GCATC 2 cut(s) 408, 474
MaeI CTAG 2 cut(s) 69, 562
MalI GATC 2 cut(s) 47, 426
MboI GATC 2 cut(s) 45, 424
MboII GAAGA 3 cut(s) 55, 84, 376
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 1 cut(s) 33
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 2 cut(s) 439, 533
MnlI CCTC 6 cut(s) 39, 57, 218, 489, 505, 542
MspI CCGG 3 cut(s) 231, 380, 414
MspR9I CCNGG 2 cut(s) 232, 380
MwoI GCNNNNNNNGC 2 cut(s) 64, 177
NciI CCSGG 2 cut(s) 232, 380
NdeII GATC 2 cut(s) 45, 424
NlaIV GGNNCC 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 67
PfeI GAWTC 2 cut(s) 410, 515
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 3 cut(s) 60, 254, 398
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 229
PspXI VCTCGAGB 1 cut(s) 259
PsuI RGATCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 374
SacI GAGCTC 1 cut(s) 478
SatI GCNGC 3 cut(s) 59, 253, 397
Sau3AI GATC 2 cut(s) 45, 424
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 232, 380
SduI GDGCHC 1 cut(s) 478
SetI ASST 8 cut(s) 138, 161, 177, 220, 387, 423, 478, 553
SfaNI GCATC 2 cut(s) 408, 474
SfcI CTRYAG 1 cut(s) 469
Sfr274I CTCGAG 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 3 cut(s) 160, 259, 428
SmoI CTYRAG 3 cut(s) 160, 259, 428
Sse9I AATT 1 cut(s) 33
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 2 cut(s) 222, 482
SspMI CTAG 2 cut(s) 69, 562
SstI GAGCTC 1 cut(s) 478
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 230, 378
TaaI ACNGT 3 cut(s) 145, 357, 499
TaqI TCGA 2 cut(s) 260, 518
TasI AATT 1 cut(s) 33
TfiI GAWTC 2 cut(s) 410, 515
TscAI CASTG 2 cut(s) 148, 282
TseI GCWGC 3 cut(s) 58, 252, 396
TspRI CASTG 2 cut(s) 148, 282
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 447
XhoI CTCGAG 1 cut(s) 259
XspI CTAG 2 cut(s) 69, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.