Rh1CG432600

Ribosome-binding factor PSRP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015107
Physical Location & Seq
Reverse (-)
68866691 .. 68868515
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG432600.1

Sequence Viewer

Length: 831 bp
ATGGCTACTCTACCATCTACCTTTTTGGCAAAGCCCCACATCTCCAAGCTCTCATCTGACTCCTCTAATTTCTTGAACCCATGTAAGAATTTGAGACCCATTTCGATTGCGATTAGACCCAGAAGCAAGGATTATGGTGTAAAGATGTCATGGGATGGTCCACTTTCTTCAGTCAAGTTGATCATACAGGGAAAGCATTTGGAGTTGACAGAACCAATCAAGAAGCATGTGGAAGACAAAGTTGGAAAGGCAATCTCAAAGCACAGTCACCTGGTGAGGGAAGCTGATATTCGGTTGTCTGTTCGAGGTGGAGACCTTGGAAAAGGCCCAAAGATCAGGAGATGTGAGGTCACTTTGTTCACAAAGAAGCATGGAGTGTTCAGGGCCGAGGAAGAAGGGGAGACGCTTATTGCTAGCATAGATCTGGCAGCTTCTATCATCCAGAGGAAGTTGAGGAAAATCAAGGAGAAGGTATCAGATCATGGCCGTCACATGAAAGGCTTTAACAGATTGAAAGTCAGGGAGGCTCAAATACCTGTGGAAGTGGAAGAAGAAGATCCCCAGGAGGAGGAGGAAGACTTATTGGATGAGGTTGTCCGTACAAAATACTTCGACATGCCACCTTTGACAGTCGCTGAAGCAGTGGATCAACTGGAAAACCTTGATCATGACTTCTATGCTTTCAGAAATGAAGAAACTGGTGAGATTAACATCCTATACAGAAGAAAAACAGGAGGCTATGGGGTTATTATACCCAAAGGAAGTGGGAAAGCTGATAAAGTGGAGAATGGGGTGGTAGAACGAGCTAGAGAAGCTTCCATGGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

276

Amino Acids

31.09

Weight (kDa)

8.36

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30AE PF02482 61 - 158 5.3e-19 Sigma 54 modulation protein / S30EA ribosomal protein
Ribosom_S30AE_C PF16321 196 - 249 1e-24 Sigma 54 modulation/S30EA ribosomal protein C terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24490
fragaria_vesca FvH4_7g32900
malus_domestica MD07G1298900.v1.1
prunus_persica Prupe.2G318800_v2.0.a1
pyrus_communis pycom07g27140
rosa_chinensis RchiOBHm_Chr1g0382861
rosa_laevigata RLG00000026153
rosa_multiflora Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii Rroxscaffold_4G00277830
rosa_rugosa Rorug01G0436900
rosa_samantha Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana Rw1G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 551, 654
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 2 cut(s) 153, 657
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 2 cut(s) 277, 568
AgsI TTSAA 2 cut(s) 76, 514
AjnI CCWGG 2 cut(s) 270, 561
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 6 cut(s) 49, 284, 431, 773, 806, 815
AluI AGCT 6 cut(s) 49, 284, 431, 773, 806, 815
Alw26I GTCTC 3 cut(s) 88, 306, 395
AlwI GGATC 2 cut(s) 551, 654
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 3 cut(s) 325, 384, 484
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 88
AspS9I GGNCC 3 cut(s) 158, 326, 384
AsuHPI GGTGA 3 cut(s) 260, 286, 713
AsuNHI GCTAGC 1 cut(s) 413
AvaII GGWCC 1 cut(s) 158
BbsI GAAGAC 2 cut(s) 240, 582
BbvI GCAGC 1 cut(s) 440
BccI CCATC 2 cut(s) 22, 149
BceAI ACGGC 1 cut(s) 471
BciT130I CCWGG 2 cut(s) 272, 563
BclI TGATCA 2 cut(s) 180, 664
BcoDI GTCTC 3 cut(s) 88, 306, 395
BfaI CTAG 2 cut(s) 414, 807
BglII AGATCT 1 cut(s) 421
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 272, 563
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 158, 326, 384
BmrFI CCNGG 2 cut(s) 272, 563
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 2 cut(s) 240, 582
BsaBI GATNNNNATC 1 cut(s) 710
BsaI GGTCTC 2 cut(s) 88, 306
BsaJI CCNNGG 4 cut(s) 316, 387, 561, 819
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 568
Bse1I ACTGG 2 cut(s) 657, 703
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 2 cut(s) 272, 563
BseDI CCNNGG 4 cut(s) 316, 387, 561, 819
BseGI GGATG 4 cut(s) 160, 438, 592, 711
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 2 cut(s) 277, 568
BseNI ACTGG 2 cut(s) 657, 703
BseRI GAGGAG 3 cut(s) 52, 581, 584
BseXI GCAGC 1 cut(s) 440
BshFI GGCC 3 cut(s) 327, 386, 486
BslI CCNNNNNNNGG 2 cut(s) 277, 568
BsmAI GTCTC 3 cut(s) 88, 306, 395
BsmBI CGTCTC 1 cut(s) 395
BsnI GGCC 3 cut(s) 327, 386, 486
Bso31I GGTCTC 2 cut(s) 88, 306
Bsp143I GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
Bsp19I CCATGG 1 cut(s) 819
BspANI GGCC 3 cut(s) 327, 386, 486
BspHI TCATGA 1 cut(s) 667
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 551, 654
BspTNI GGTCTC 2 cut(s) 88, 306
BsrI ACTGG 2 cut(s) 657, 703
BssECI CCNNGG 4 cut(s) 316, 387, 561, 819
BssMI GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
BssT1I CCWWGG 2 cut(s) 316, 819
Bst2UI CCWGG 2 cut(s) 272, 563
Bst4CI ACNGT 2 cut(s) 266, 631
BstC8I GCNNGC 1 cut(s) 415
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 4 cut(s) 160, 438, 592, 711
BstKTI GATC 7 cut(s) 183, 336, 424, 481, 559, 649, 667
BstMAI GTCTC 3 cut(s) 88, 306, 395
BstMBI GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
BstMWI GCNNNNNNNGC 2 cut(s) 812, 821
BstNI CCWGG 2 cut(s) 272, 563
BstNSI RCATGY 2 cut(s) 230, 619
BstSCI CCNGG 2 cut(s) 270, 561
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 2 cut(s) 240, 582
BstX2I RGATCY 2 cut(s) 421, 556
BstYI RGATCY 2 cut(s) 421, 556
BsuRI GGCC 3 cut(s) 327, 386, 486
BtgI CCRYGG 1 cut(s) 819
BtsCI GGATG 4 cut(s) 160, 438, 592, 711
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 415
CaiI CAGNNNCTG 1 cut(s) 635
CciI TCATGA 1 cut(s) 667
Cfr13I GGNCC 3 cut(s) 158, 326, 384
CseI GACGC 1 cut(s) 412
CsiI ACCWGGT 1 cut(s) 270
Csp6I GTAC 1 cut(s) 600
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 9 cut(s) 81, 150, 227, 371, 482, 493, 616, 668, 820
CviQI GTAC 1 cut(s) 600
DpnI GATC 7 cut(s) 182, 335, 423, 480, 558, 648, 666
DpnII GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
DraIII CACNNNGTG 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 316, 819
Eco31I GGTCTC 2 cut(s) 88, 306
Eco47I GGWCC 1 cut(s) 158
Eco57I CTGAAG 2 cut(s) 153, 657
EcoRII CCWGG 2 cut(s) 270, 561
EcoT14I CCWWGG 2 cut(s) 316, 819
ErhI CCWWGG 2 cut(s) 316, 819
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 9 cut(s) 84, 153, 230, 374, 485, 496, 619, 671, 823
FatI CATG 9 cut(s) 80, 149, 226, 370, 481, 492, 615, 667, 819
FbaI TGATCA 2 cut(s) 180, 664
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 4 cut(s) 167, 425, 599, 698
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 2 cut(s) 414, 807
GluI GCNGC 1 cut(s) 429
HaeIII GGCC 3 cut(s) 327, 386, 486
HgaI GACGC 1 cut(s) 412
Hin1II CATG 9 cut(s) 84, 153, 230, 374, 485, 496, 619, 671, 823
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 1 cut(s) 59
HphI GGTGA 3 cut(s) 260, 286, 713
Hpy166II GTNNAC 3 cut(s) 161, 207, 360
Hpy188I TCNGA 3 cut(s) 58, 478, 686
Hpy188III TCNNGA 5 cut(s) 73, 220, 337, 442, 668
Hpy8I GTNNAC 3 cut(s) 161, 207, 360
HpyAV CCTTC 2 cut(s) 389, 463
HpyCH4III ACNGT 2 cut(s) 266, 631
HpyF10VI GCNNNNNNNGC 2 cut(s) 812, 821
Hsp92II CATG 9 cut(s) 84, 153, 230, 374, 485, 496, 619, 671, 823
Ksp22I TGATCA 2 cut(s) 180, 664
Kzo9I GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
Lsp1109I GCAGC 1 cut(s) 440
MabI ACCWGGT 1 cut(s) 270
MaeI CTAG 2 cut(s) 414, 807
MaeIII GTNAC 3 cut(s) 266, 349, 488
MalI GATC 7 cut(s) 182, 335, 423, 480, 558, 648, 666
MboI GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
MboII GAAGA 9 cut(s) 159, 245, 404, 560, 563, 566, 587, 704, 735
MflI RGATCY 2 cut(s) 421, 556
MluCI AATT 2 cut(s) 67, 88
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 223
MseI TTAA 2 cut(s) 504, 708
MspR9I CCNGG 2 cut(s) 272, 563
MvaI CCWGG 2 cut(s) 272, 563
MwoI GCNNNNNNNGC 2 cut(s) 812, 821
NcoI CCATGG 1 cut(s) 819
NdeII GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 9 cut(s) 84, 153, 230, 374, 485, 496, 619, 671, 823
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 3 cut(s) 266, 349, 488
NspI RCATGY 2 cut(s) 230, 619
PagI TCATGA 1 cut(s) 667
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 270, 561
PspGI CCWGG 2 cut(s) 270, 561
PspPI GGNCC 3 cut(s) 158, 326, 384
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 421, 556
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
SaqAI TTAA 2 cut(s) 504, 708
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 7 cut(s) 180, 333, 421, 478, 556, 646, 664
Sau96I GGNCC 3 cut(s) 158, 326, 384
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 272, 563
SexAI ACCWGGT 1 cut(s) 270
SinI GGWCC 1 cut(s) 158
Sse9I AATT 2 cut(s) 67, 88
SspMI CTAG 2 cut(s) 414, 807
StyD4I CCNGG 2 cut(s) 270, 561
StyI CCWWGG 2 cut(s) 316, 819
TaaI ACNGT 2 cut(s) 266, 631
TaqI TCGA 3 cut(s) 104, 304, 612
TasI AATT 2 cut(s) 67, 88
Tru1I TTAA 2 cut(s) 504, 708
Tru9I TTAA 2 cut(s) 504, 708
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 3 cut(s) 266, 349, 488
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 3 cut(s) 266, 349, 488
TspDTI ATGAA 2 cut(s) 509, 705
TspGWI ACGGA 1 cut(s) 587
TspRI CASTG 1 cut(s) 648
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 88
XceI RCATGY 2 cut(s) 230, 619
XspI CTAG 2 cut(s) 414, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.