Prupe.2G318800_v2.0.a1

Ribosome-binding factor PSRP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015107
Physical Location & Seq
Reverse (-)
29787297 .. 29789932
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G318800.1

Sequence Viewer

Length: 1254 bp
ATGGGAAGGAATCGGACAAATGGAATTTTGGGACGATCTCGGATCCAACGTACCATAACCACGAGCCATCAGGCCCATCACTACAACACAAACACGTGTCGGTGGGTCTCCCTCTTTGAGGCATTGAATGTAGACGTTGAATCAACCAAAGAAAACCATCCATCCAATCTACACCGTCCAATCACAACCCATAACTCTGCTCCTAAAACCCCTCTTATTGATTTTCTTTCATTTTTTCCTTTCAACTTTCCATCTATCCAAACACTTCCAGAAACTTATCCCAAACCTAAACTCTGCGAGTATCACGAAATGGCTACTCTGTTCACTTCCTTGCAGATGCAGACAACCTTTCTTTACCCCCTTCATCCCTCTTCCTCTTCGGCTTCTTCTCAATCAATGTCCACTCTCTCATCGACGCTTCTCACAAAGCCCCAAATCTTCACGCTATCGTCTACCTCTTCCACTTTCTTCAACCCCGCTAAGCATCTGAAACCCATTTCCATTGCGATTAGACCCACAAACAAGTGCCATGGCAACTCACTCTCTGTACGGATGTCCTGGGACGGCCCACTCTCCTCAGTCAAGTTGATCGTACAGGGAAGGAATTTGGAGTTATCTGAAGCGGTCAAGAAGCATGTGGAAGACAAGGTTGGCAAGGCAGTTCAAAAGCACAGTCACCTAGCCAGGGAAGCTGATGTTCGGTTGTCTGTTCGAGGTGGAGAGTTTGGAAAAGGCCCAAGGATTAGGAGATGCGAGGTGACTTTGTTCACGAAGAAGCATGGAGTGTTCCGGGCTGAGGAAGAAGCTGAGACACTTTATGCAAGCATAGATCTGGCTTCTTCTATCATCCAGAGGAAGTTGAGGAAAATAAAGGAGAAGGACTCAGACCACGGTCGGCACATGAAAGGTTTTAACAGATTGAAAGTTAGGGAGCCCGCAACACAAATAGTAGTGGAAGAGGAAGAGGAAGAGACAGTTCCCCAAGAGGAGGAAGGAGACTTCATCAATGACGAGATTGTCCGTATGAAATACTTTGACATGCCACCTTTGACTGTCGCTGAAGCAGTTGATCAACTGGAAAATGTTGATCATGACTTCTATGCTTTCCGAAATGAAGAAACTGGTGAAATTAATATAATATACAAAAGAAAAGAAGGAGGTTATGGGCTTATTATACCCAAAGGAAATGGTAAAGCTGAGAAATCGGGGCATGTGGTGATAGAACGAGCTAGAGAACATTCCTTGGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosom_S30AE_C Ribosomal_S30AE

Protein Analysis

418

Amino Acids

47.25

Weight (kDa)

8.68

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015107)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24490
fragaria_vesca FvH4_7g32900
malus_domestica MD07G1298900.v1.1
prunus_persica Prupe.2G318800_v2.0.a1
pyrus_communis pycom07g27140
rosa_chinensis RchiOBHm_Chr1g0382861
rosa_laevigata RLG00000026153
rosa_multiflora Rmu_sc0002242.1_g000012 Rmu_sc0010366.1_g000008
rosa_roxburghii Rroxscaffold_4G00277830
rosa_rugosa Rorug01G0436900
rosa_samantha Rh1AG461900 Rh1BG418900 Rh1CG432600 Rh1DG451000
rosa_wichuraiana Rw1G040990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1016
AccI GTMKAC 2 cut(s) 132, 452
AciI CCGC 3 cut(s) 477, 623, 936
AclWI GGATC 2 cut(s) 37, 50
AcsI RAATTY 2 cut(s) 24, 604
AcuI CTGAAG 2 cut(s) 639, 1080
AcvI CACGTG 1 cut(s) 96
AfaI GTAC 3 cut(s) 52, 549, 594
AfiI CCNNNNNNNGG 4 cut(s) 118, 685, 796, 988
AflIII ACRYGT 2 cut(s) 93, 95
AgsI TTSAA 6 cut(s) 127, 140, 244, 472, 665, 922
AjnI CCWGG 2 cut(s) 557, 683
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 4 cut(s) 692, 806, 1196, 1229
AluI AGCT 4 cut(s) 692, 806, 1196, 1229
Alw26I GTCTC 4 cut(s) 112, 803, 965, 990
AlwI GGATC 2 cut(s) 37, 50
AoxI GGCC 3 cut(s) 72, 565, 733
ApoI RAATTY 2 cut(s) 24, 604
ArsI GACNNNNNNTTYG 2 cut(s) 658, 690
AseI ATTAAT 1 cut(s) 1131
AspS9I GGNCC 3 cut(s) 73, 566, 734
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 4 cut(s) 668, 769, 1136, 1228
BamHI GGATCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 936
BauI CACGAG 1 cut(s) 61
BbrPI CACGTG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 795
BccI CCATC 5 cut(s) 75, 84, 165, 169, 259
BceAI ACGGC 1 cut(s) 580
BciT130I CCWGG 2 cut(s) 559, 685
BclI TGATCA 2 cut(s) 1069, 1087
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 4 cut(s) 112, 803, 965, 990
BfaI CTAG 2 cut(s) 680, 1230
BglII AGATCT 1 cut(s) 829
BlpI GCTNAGC 1 cut(s) 480
Bme1390I CCNGG 3 cut(s) 559, 685, 791
BmgT120I GGNCC 3 cut(s) 73, 566, 734
BmiI GGNNCC 2 cut(s) 44, 933
BmrFI CCNGG 3 cut(s) 559, 685, 791
BmsI GCATC 3 cut(s) 327, 493, 740
BoxI GACNNNNGTC 1 cut(s) 891
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 866, 898
Bpu10I CCTNAGC 1 cut(s) 795
Bpu1102I GCTNAGC 1 cut(s) 480
BpuMI CCSGG 1 cut(s) 791
BsaAI YACGTR 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 6 cut(s) 529, 558, 684, 737, 889, 1242
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 685, 796, 988
Bse1I ACTGG 2 cut(s) 1080, 1126
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 2 cut(s) 559, 685
BseDI CCNNGG 6 cut(s) 529, 558, 684, 737, 889, 1242
BseGI GGATG 5 cut(s) 157, 161, 364, 558, 846
BseLI CCNNNNNNNGG 4 cut(s) 118, 685, 796, 988
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 5 cut(s) 591, 786, 798, 897, 1188
BseNI ACTGG 2 cut(s) 1080, 1126
BseRI GAGGAG 2 cut(s) 565, 1001
Bsh1285I CGRYCG 1 cut(s) 895
BshFI GGCC 3 cut(s) 74, 567, 735
BsiEI CGRYCG 1 cut(s) 895
BsiSI CCGG 1 cut(s) 790
BslFI GGGAC 2 cut(s) 45, 575
BslI CCNNNNNNNGG 4 cut(s) 118, 685, 796, 988
BsmAI GTCTC 4 cut(s) 112, 803, 965, 990
BsmFI GGGAC 2 cut(s) 45, 575
BsnI GGCC 3 cut(s) 74, 567, 735
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 936
Bsp143I GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
Bsp1720I GCTNAGC 1 cut(s) 480
Bsp19I CCATGG 1 cut(s) 529
BspACI CCGC 3 cut(s) 477, 623, 936
BspANI GGCC 3 cut(s) 74, 567, 735
BspCNI CTCAG 5 cut(s) 590, 787, 799, 896, 1189
BspHI TCATGA 1 cut(s) 1090
BspLI GGNNCC 2 cut(s) 44, 933
BspPI GGATC 2 cut(s) 37, 50
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 2 cut(s) 1080, 1126
BssECI CCNNGG 6 cut(s) 529, 558, 684, 737, 889, 1242
BssMI GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 3 cut(s) 529, 737, 1242
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 559, 685
Bst4CI ACNGT 5 cut(s) 176, 674, 893, 976, 1054
Bst6I CTCTTC 6 cut(s) 376, 382, 463, 951, 957, 963
BstBAI YACGTR 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 823, 936
BstDEI CTNAG 6 cut(s) 480, 577, 795, 807, 883, 1197
BstDSI CCRYGG 2 cut(s) 529, 889
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 5 cut(s) 157, 161, 364, 558, 846
BstKTI GATC 6 cut(s) 38, 45, 591, 832, 1072, 1090
BstMAI GTCTC 4 cut(s) 112, 803, 965, 990
BstMBI GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
BstMCI CGRYCG 1 cut(s) 895
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstNI CCWGG 2 cut(s) 559, 685
BstNSI RCATGY 3 cut(s) 638, 1042, 1214
BstPAI GACNNNNGTC 1 cut(s) 891
BstSCI CCNGG 3 cut(s) 557, 683, 789
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 2 cut(s) 42, 829
BstYI RGATCY 2 cut(s) 42, 829
BsuRI GGCC 3 cut(s) 74, 567, 735
BtgI CCRYGG 2 cut(s) 529, 889
BtsCI GGATG 5 cut(s) 157, 161, 364, 558, 846
Cac8I GCNNGC 2 cut(s) 823, 936
CciI TCATGA 1 cut(s) 1090
Cfr13I GGNCC 3 cut(s) 73, 566, 734
CseI GACGC 1 cut(s) 424
Csp6I GTAC 3 cut(s) 51, 548, 593
CviAII CATG 7 cut(s) 530, 635, 779, 901, 1039, 1091, 1211
CviQI GTAC 3 cut(s) 51, 548, 593
DdeI CTNAG 6 cut(s) 480, 577, 795, 807, 883, 1197
DpnI GATC 6 cut(s) 37, 44, 590, 831, 1071, 1089
DpnII GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
DrdI GACNNNNNNGTC 1 cut(s) 1016
DseDI GACNNNNNNGTC 1 cut(s) 1016
Eam1104I CTCTTC 6 cut(s) 376, 382, 463, 951, 957, 963
EarI CTCTTC 6 cut(s) 376, 382, 463, 951, 957, 963
Eco130I CCWWGG 3 cut(s) 529, 737, 1242
Eco24I GRGCYC 1 cut(s) 936
Eco31I GGTCTC 1 cut(s) 112
Eco57I CTGAAG 2 cut(s) 639, 1080
Eco72I CACGTG 1 cut(s) 96
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoRII CCWGG 2 cut(s) 557, 683
EcoT14I CCWWGG 3 cut(s) 529, 737, 1242
EcoT38I GRGCYC 1 cut(s) 936
ErhI CCWWGG 3 cut(s) 529, 737, 1242
FaeI CATG 7 cut(s) 533, 638, 782, 904, 1042, 1094, 1214
FaqI GGGAC 2 cut(s) 45, 575
FatI CATG 7 cut(s) 529, 634, 778, 900, 1038, 1090, 1210
FauI CCCGC 2 cut(s) 484, 943
FbaI TGATCA 2 cut(s) 1069, 1087
FblI GTMKAC 2 cut(s) 132, 452
FokI GGATG 5 cut(s) 144, 148, 351, 565, 833
FriOI GRGCYC 1 cut(s) 936
FspBI CTAG 2 cut(s) 680, 1230
HaeIII GGCC 3 cut(s) 74, 567, 735
HapII CCGG 1 cut(s) 790
HgaI GACGC 1 cut(s) 424
Hin1II CATG 7 cut(s) 533, 638, 782, 904, 1042, 1094, 1214
HinfI GANTC 3 cut(s) 10, 140, 881
HpaII CCGG 1 cut(s) 790
HphI GGTGA 4 cut(s) 668, 769, 1136, 1228
Hpy166II GTNNAC 5 cut(s) 133, 324, 402, 453, 768
Hpy188I TCNGA 6 cut(s) 15, 42, 489, 619, 886, 1109
Hpy188III TCNNGA 6 cut(s) 269, 305, 628, 769, 850, 1091
Hpy8I GTNNAC 5 cut(s) 133, 324, 402, 453, 768
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 5 cut(s) 371, 594, 871, 986, 1148
HpyCH4III ACNGT 5 cut(s) 176, 674, 893, 976, 1054
HpyCH4IV ACGT 3 cut(s) 49, 95, 135
HpyCH4V TGCA 3 cut(s) 334, 340, 821
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
HpyF3I CTNAG 6 cut(s) 480, 577, 795, 807, 883, 1197
HpySE526I ACGT 3 cut(s) 49, 95, 135
Hsp92II CATG 7 cut(s) 533, 638, 782, 904, 1042, 1094, 1214
Ksp22I TGATCA 2 cut(s) 1069, 1087
Kzo9I GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
LmnI GCTCC 2 cut(s) 205, 931
LweI GCATC 3 cut(s) 327, 493, 740
MaeI CTAG 2 cut(s) 680, 1230
MaeII ACGT 3 cut(s) 49, 95, 135
MaeIII GTNAC 2 cut(s) 674, 757
MalI GATC 6 cut(s) 37, 44, 590, 831, 1071, 1089
MboI GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
MflI RGATCY 2 cut(s) 42, 829
MhlI GDGCHC 1 cut(s) 936
MluCI AATT 3 cut(s) 24, 604, 1128
MlyI GAGTC 1 cut(s) 875
MmeI TCCRAC 1 cut(s) 70
MseI TTAA 2 cut(s) 912, 1131
MspI CCGG 1 cut(s) 790
MspR9I CCNGG 3 cut(s) 559, 685, 791
MvaI CCWGG 2 cut(s) 559, 685
MwoI GCNNNNNNNGC 1 cut(s) 689
NciI CCSGG 1 cut(s) 791
NcoI CCATGG 1 cut(s) 529
NdeII GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
NlaIII CATG 7 cut(s) 533, 638, 782, 904, 1042, 1094, 1214
NlaIV GGNNCC 2 cut(s) 44, 933
NmuCI GTSAC 2 cut(s) 674, 757
NspI RCATGY 3 cut(s) 638, 1042, 1214
PagI TCATGA 1 cut(s) 1090
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PfeI GAWTC 2 cut(s) 10, 140
PleI GAGTC 1 cut(s) 875
PmaCI CACGTG 1 cut(s) 96
PmlI CACGTG 1 cut(s) 96
PpsI GAGTC 1 cut(s) 875
Ppu21I YACGTR 1 cut(s) 96
PshAI GACNNNNGTC 1 cut(s) 891
PshBI ATTAAT 1 cut(s) 1131
Psp6I CCWGG 2 cut(s) 557, 683
PspCI CACGTG 1 cut(s) 96
PspGI CCWGG 2 cut(s) 557, 683
PspN4I GGNNCC 2 cut(s) 44, 933
PspPI GGNCC 3 cut(s) 73, 566, 734
PsuI RGATCY 2 cut(s) 42, 829
RsaI GTAC 3 cut(s) 52, 549, 594
RsaNI GTAC 3 cut(s) 51, 548, 593
SaqAI TTAA 2 cut(s) 912, 1131
Sau3AI GATC 6 cut(s) 35, 42, 588, 829, 1069, 1087
Sau96I GGNCC 3 cut(s) 73, 566, 734
SchI GAGTC 1 cut(s) 875
ScrFI CCNGG 3 cut(s) 559, 685, 791
SduI GDGCHC 1 cut(s) 936
SfaNI GCATC 3 cut(s) 327, 493, 740
Sse9I AATT 3 cut(s) 24, 604, 1128
SsiI CCGC 3 cut(s) 477, 623, 936
SspMI CTAG 2 cut(s) 680, 1230
StyD4I CCNGG 3 cut(s) 557, 683, 789
StyI CCWWGG 3 cut(s) 529, 737, 1242
TaaI ACNGT 5 cut(s) 176, 674, 893, 976, 1054
TaiI ACGT 3 cut(s) 52, 98, 138
TaqI TCGA 2 cut(s) 413, 712
TasI AATT 3 cut(s) 24, 604, 1128
TfiI GAWTC 2 cut(s) 10, 140
Tru1I TTAA 2 cut(s) 912, 1131
Tru9I TTAA 2 cut(s) 912, 1131
TseFI GTSAC 2 cut(s) 674, 757
Tsp45I GTSAC 2 cut(s) 674, 757
TspDTI ATGAA 6 cut(s) 219, 353, 917, 991, 1040, 1128
TspGWI ACGGA 2 cut(s) 565, 1010
VspI ATTAAT 1 cut(s) 1131
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 2 cut(s) 24, 604
XceI RCATGY 3 cut(s) 638, 1042, 1214
XmiI GTMKAC 2 cut(s) 132, 452
XspI CTAG 2 cut(s) 680, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.