Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009191

Physical Location & Seq

Genomic Coordinates Forward (+)

24033057 .. 24039566

Gene Structure 6510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33960.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2574 bp

ATGCTTGAAGCTGGTTGTGAGCCGGATGAGGTTGCTTGTGGGACAATGCTGTGCACGTATGCGCGGTGGGGACGCGAGAAGGCAATGCTGGCGTTTTATTCAGCTGTGCAGGAAAGAGGGATTGTGCTTTCGGTTGCGGTGTATAATTTCATGTTGTCCTCGTTGCAGAAGAAAGGGATGCATGAGAAAGTGGTGCAGGTTTGGAGGCAGATGGTTGGGGAGGGAGTGGTGCCGAATAAGTTCACTTATACTGTGGTGATTAGCTCACTTGTCAAAGAAGGCCTTGTTGAGGAGGCTCTCAAGAGTTTTGAAGAGTGTAAGAGTGTTGGATTTGTTCCTGAGGAGGCGACTTATAGTATGCTTATCAGTTTAAGCACCAAAAGTGGCAACTATGAGCAAGCGCTAAGATTGTACGAGGACATGAGATCTATGAGAATAGTTCCGAGCAACTACACCTGCGCTTCGTTACTCGCTTTGTATTACAAGAAGGAGGATTATTCCAAAGCCCTTTCTCTCTTTTCAGAAATGGAGAGAGAGAAAATTGCGGCTGATGAAGTCATATATGGTTTGCTCATTAGAATATATGGAAAGCTTGGTCTTTATGAGGATGCTCAGACAACATTTAAAGAGATGGAGCAACTGGGTCTACTTAGTGATCAGAAAACGTACTTAGCAATGGCACAAGTCAATCTCAATTCAGGGAATTATGACAAAGCTTTAGAAGTTATTGAACTAATGAAGTCTAGAAACAACATTTGGCTCTCAAGGTTTGCTTATATTGTCTTATTGCAGTGTTATGTTATGAAGGAAGATCTTAGTTCTGCTGAAGTGACATTTCAGGCTCTCTCCAAGACTGGACTCCCAGATGCAGGTTCTTGTAATGATATGCTCAATTTGTACATTAGGCTAGGCTTAATGGAAAAGGCCAAGGACTTTATTGTCCAGATAAGAAGAGACCGAGTAGATTTTGATGAGGAGCTTTTTAGAACTGTTATGAGTGTATATTGCAAGGAGGGAATGCTTGGAGATACTGAACAGTTGATAAACGAGCTCAGTACAAGTCGATTATTCAAAGATAGTAGATTCGTCCAAACAATTTCTAGGGCTATATATGAACACAAGGATGACCAACAACCTAAAGGTAAACTTGTGACCTTTTTCCAGCCGGATACTACGGCCCTTGGATTGGTGCTCAGTCTCTATCTTGCAAATGGCAATATGAGTAAGATACAAAGAGCTGTGGCATTGTTGCTTGAGACTTCTGGTGGGTTGTCAACTGCTAGTCAGATCATTAGGAACATTATTAGAGATGGTGATGCATATAAAGCAGAAATTCGTATTCATCAATTGCTCAAGCTTGGCTGCAGAGTGGATAATGCAACAATTTCTTCTTTAATCAGTGTATATGGAAAGAAACACAAGCTGAAAAAGGCCCAAGAGATATATACAGCATTTGCAGATTCACCTCTAGCTAAAAAGATACTATGTAACTCAATGCTTGATGCTTATGCCAAATGTGGTAAATCAGAGGAGGCATACTCGCTTTACAGACAGCTTACAGAAGAAGGGCATGATCTGGATGCTGTTGCCATCAGCATAGTTGTCAATGCTTTGACTCATAGAGGAAAACATAGAGAAGCAGAGAACGTCATCCGCCAAAGTCTTGAGCACCACTCGGAGCTCGATACTGTAGCATACAATACTTTCATCAAGGCTATGCTGGAAGCAGGTAGGTTGCATTTTGCATCTAGTATCTATGAGTCCATGCTTTCTCAGGGGGTTACTCCATCAATTCAGACATTTAACACCATGATCAGTGTTTATGGACGGGGTAGAAAGTTGGATAGAGCTGTGGAGATGTTTAATACAGCTTGTAGCTTGGGTTTGTCTCCGGATGAAAAGGCATATATGAACTTGATTAGCTACTATGGAAAAGCTGGCAAAAGGCATGAAGCTTCCATGTTATTTGCCAAAATGCGTGAAAGCATAAAACCTGGGATGGTAAGTTACAATATAATGATGAATGTATATGCTACTGGGGGACTATATGAAGAAGCAGAGCAATTATTCAAAGCCATGAAGCAAGATGGTTGGTTACCTGACTCGTTCACTTACCTATCCCTAGTTCGTGCTTACACAGAGAGTTTGAAGTATTCAGAAGCCGAGGAAACCATTAATTCTATGCAAGAAGATGGAGTCTATCCTTCATGTTCACATTTTAACCTTATACTCTCTGCTTTTGCCAAAATGGGATTGATAGGGGAAGCAGAAAGAGTTTATGAGGAACTGATTGCAGCAGGTTTGAACCCAGATGCAGCATGTTGTGGGAGTATGCTGCGAGGTTACATGGACTATGGACATGTGGAAGAAGGCATCAAGTTTTTTGAACAGAATAGTGATTCAATAAAGGCAGACAGGTTTATTTTGAGTGCAGCTGTGCACTTATACAAATCTGTAGGTAAAGAAGTAGAAGCTCAAAATGTTTTGCATTCCATGAGTAGTATGGGAATTTCATTTCTGGAGAAGCTAGAAGTTGGATCCAAGCTAAAATCCCTGCCAATGTTGCAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

858

Amino Acids

96.32

Weight (kDa)

5.9

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 239	1.4e-07	PPR repeat family
PPR_long	PF17177	245 - 376	1.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	262 - 310	1.4e-10	PPR repeat family
PPR_2	PF13041	301 - 341	4.2e-06	PPR repeat family
PPR_long	PF17177	314 - 417	2.6e-08	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	380 - 494	6.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	713 - 756	8.6e-07	PPR repeat family
PPR_3	PF13812	778 - 827	2.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	780 - 826	3.4e-10	PPR repeat family
PPR_3	PF13812	845 - 895	4.9e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	874 - 980	9.7e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	883 - 930	2.1e-11	PPR repeat family
PPR	PF01535	886 - 915	3.6e-07	PPR repeat
PPR_long	PF17177	902 - 1020	2.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	907 - 967	4.4e-08	Pentatricopeptide repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27270 AT5G27270 AT5G27270 AT5G27270 AT5G27270
fragaria_vesca	FvH4_7g33960 FvH4_7g33960
malus_domestica	MD01G1235800.v1.1
prunus_persica	Prupe.2G325900_v2.0.a1 Prupe.2G325900_v2.0.a1
pyrus_communis	pycom01g24390
rosa_chinensis	RchiOBHm_Chr1g0384191
rosa_laevigata	RLG00000026061
rosa_multiflora	Rmu_sc0005139.1_g000006 Rmu_sc0014578.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276870
rosa_rugosa	Rorug01G0445600
rosa_samantha	Rh1AG471100 Rh1BG428800 Rh1CG441500 Rh1DG461600
rosa_wichuraiana	Rw1G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	464
AasI	GACNNNNNNGTC	1 cut(s)	938
Acc36I	ACCTGC	5 cut(s)	187, 464, 860, 1718, 2288
AccB1I	GGYRCC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	646
AccII	CGCG	2 cut(s)	64, 75
AccIII	TCCGGA	1 cut(s)	1891
AciI	CCGC	4 cut(s)	64, 137, 545, 1654
AclWI	GGATC	2 cut(s)	2532, 2545
AcsI	RAATTY	2 cut(s)	1332, 2508
AcuI	CTGAAG	1 cut(s)	846
AfaI	GTAC	4 cut(s)	413, 668, 899, 1057
AfeI	AGCGCT	1 cut(s)	402
AfiI	CCNNNNNNNGG	3 cut(s)	289, 869, 1186
AflIII	ACRYGT	1 cut(s)	2359
AgsI	TTSAA	9 cut(s)	8, 311, 731, 1072, 2071, 2149, 2305, 2387, 2403
AjnI	CCWGG	1 cut(s)	1993
AjuI	GAANNNNNNNTTGG	2 cut(s)	739, 771
Alw21I	GWGCWC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
Alw26I	GTCTC	4 cut(s)	948, 1202, 1250, 1893
Alw44I	GTGCAC	2 cut(s)	52, 2438
AlwI	GGATC	2 cut(s)	2532, 2545
Aor13HI	TCCGGA	1 cut(s)	1891
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	4 cut(s)	280, 924, 1176, 1431
ApaLI	GTGCAC	2 cut(s)	52, 2438
ApeKI	GCWGC	5 cut(s)	1362, 2294, 2315, 2335, 2432
ApoI	RAATTY	2 cut(s)	1332, 2508
AseI	ATTAAT	1 cut(s)	2175
Asp700I	GAANNNNTTC	1 cut(s)	239
AspLEI	GCGC	3 cut(s)	64, 403, 461
AspS9I	GGNCC	2 cut(s)	1177, 1432
AsuHPI	GGTGA	3 cut(s)	268, 1325, 1455
AxyI	CCTNAGG	1 cut(s)	339
BaeGI	GKGCMC	2 cut(s)	56, 2442
BamHI	GGATCC	1 cut(s)	2537
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	2 cut(s)	1053, 1683
Bbv12I	GWGCWC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
BbvI	GCAGC	5 cut(s)	1349, 2306, 2322, 2327, 2444
BccI	CCATC	8 cut(s)	205, 625, 1304, 1598, 1795, 1993, 2081, 2186
BceAI	ACGGC	1 cut(s)	1191
BciT130I	CCWGG	1 cut(s)	1995
BciVI	GTATCC	1 cut(s)	1162
BclI	TGATCA	2 cut(s)	655, 1812
BcoDI	GTCTC	4 cut(s)	948, 1202, 1250, 1893
BfaI	CTAG	8 cut(s)	744, 908, 1101, 1281, 1469, 1749, 2123, 2528
BfmI	CTRYAG	3 cut(s)	1363, 1689, 2454
BfoI	RGCGCY	1 cut(s)	404
BfuAI	ACCTGC	5 cut(s)	187, 464, 860, 1718, 2288
BfuI	GTATCC	1 cut(s)	1162
BglII	AGATCT	2 cut(s)	425, 811
BisI	GCNGC	6 cut(s)	546, 1363, 2295, 2316, 2336, 2433
BlsI	GCNGC	6 cut(s)	547, 1364, 2296, 2317, 2337, 2434
Bme1390I	CCNGG	1 cut(s)	1995
BmgT120I	GGNCC	2 cut(s)	1177, 1432
BmiI	GGNNCC	2 cut(s)	231, 2539
BmrFI	CCNGG	1 cut(s)	1995
BmrI	ACTGGG	2 cut(s)	650, 2046
BmsI	GCATC	9 cut(s)	168, 598, 856, 1306, 1492, 1570, 1754, 2302, 2382
BmuI	ACTGGG	2 cut(s)	650, 2046
BplI	GAGNNNNNCTC	4 cut(s)	1523, 1555, 1658, 1690
BpmI	CTGGAG	1 cut(s)	2540
BpuEI	CTTGAG	5 cut(s)	284, 748, 1274, 1337, 1685
BsaAI	YACGTR	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	948
BsaJI	CCNNGG	4 cut(s)	927, 1180, 1994, 2163
BsaWI	WCCGGW	1 cut(s)	1891
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 869, 1186
Bse1I	ACTGG	3 cut(s)	645, 859, 2041
Bse21I	CCTNAGG	1 cut(s)	339
Bse3DI	GCAATG	2 cut(s)	90, 681
BseAI	TCCGGA	1 cut(s)	1891
BseBI	CCWGG	1 cut(s)	1995
BseDI	CCNNGG	4 cut(s)	927, 1180, 1994, 2163
BseGI	GGATG	8 cut(s)	31, 183, 613, 1129, 1585, 1650, 1900, 2004
BseLI	CCNNNNNNNGG	3 cut(s)	289, 869, 1186
BseMI	GCAATG	2 cut(s)	90, 681
BseMII	CTCAG	5 cut(s)	330, 626, 1066, 1207, 1787
BseNI	ACTGG	3 cut(s)	645, 859, 2041
BseRI	GAGGAG	4 cut(s)	305, 356, 989, 1544
BseSI	GKGCMC	2 cut(s)	56, 2442
BseXI	GCAGC	5 cut(s)	1349, 2306, 2322, 2327, 2444
BsgI	GTGCAG	3 cut(s)	128, 215, 2451
Bsh1236I	CGCG	2 cut(s)	64, 75
BshFI	GGCC	4 cut(s)	282, 926, 1178, 1433
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
BsiSI	CCGG	3 cut(s)	23, 1166, 1892
BslFI	GGGAC	3 cut(s)	55, 84, 2055
BslI	CCNNNNNNNGG	3 cut(s)	289, 869, 1186
BsmAI	GTCTC	4 cut(s)	948, 1202, 1250, 1893
BsmFI	GGGAC	3 cut(s)	55, 84, 2055
BsmI	GAATGC	2 cut(s)	1023, 2488
BsnI	GGCC	4 cut(s)	282, 926, 1178, 1433
Bso31I	GGTCTC	1 cut(s)	948
Bsp1286I	GDGCHC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
Bsp13I	TCCGGA	1 cut(s)	1891
Bsp1407I	TGTACA	1 cut(s)	897
Bsp143I	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
BspACI	CCGC	4 cut(s)	64, 137, 545, 1654
BspANI	GGCC	4 cut(s)	282, 926, 1178, 1433
BspCNI	CTCAG	5 cut(s)	331, 625, 1065, 1206, 1786
BspEI	TCCGGA	1 cut(s)	1891
BspFNI	CGCG	2 cut(s)	64, 75
BspLI	GGNNCC	2 cut(s)	231, 2539
BspMAI	CTGCAG	1 cut(s)	1367
BspMI	ACCTGC	5 cut(s)	187, 464, 860, 1718, 2288
BspPI	GGATC	2 cut(s)	2532, 2545
BspT107I	GGYRCC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	948
BsrDI	GCAATG	2 cut(s)	90, 681
BsrGI	TGTACA	1 cut(s)	897
BsrI	ACTGG	3 cut(s)	645, 859, 2041
BssECI	CCNNGG	4 cut(s)	927, 1180, 1994, 2163
BssMI	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
BssT1I	CCWWGG	2 cut(s)	927, 1180
Bst2UI	CCWGG	1 cut(s)	1995
Bst4CI	ACNGT	4 cut(s)	253, 991, 1038, 1690
Bst6I	CTCTTC	2 cut(s)	306, 946
BstAUI	TGTACA	1 cut(s)	897
BstBAI	YACGTR	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	90, 399, 1939
BstDEI	CTNAG	9 cut(s)	339, 404, 612, 650, 670, 815, 1052, 1193, 1773
BstEII	GGTNACC	1 cut(s)	2094
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	8 cut(s)	31, 183, 613, 1129, 1585, 1650, 1900, 2004
BstFNI	CGCG	2 cut(s)	64, 75
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	3 cut(s)	64, 403, 461
BstKTI	GATC	7 cut(s)	428, 658, 814, 1290, 1576, 1815, 2540
BstMAI	GTCTC	4 cut(s)	948, 1202, 1250, 1893
BstMBI	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 1325, 2563
BstNI	CCWGG	1 cut(s)	1995
BstNSI	RCATGY	2 cut(s)	2322, 2363
BstPI	GGTNACC	1 cut(s)	2094
BstSCI	CCNGG	1 cut(s)	1993
BstSFI	CTRYAG	3 cut(s)	1363, 1689, 2454
BstSLI	GKGCMC	2 cut(s)	56, 2442
BstUI	CGCG	2 cut(s)	64, 75
BstV1I	GCAGC	5 cut(s)	1349, 2306, 2322, 2327, 2444
BstX2I	RGATCY	3 cut(s)	425, 811, 2537
BstYI	RGATCY	3 cut(s)	425, 811, 2537
Bsu36I	CCTNAGG	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	1162
BsuRI	GGCC	4 cut(s)	282, 926, 1178, 1433
BtsCI	GGATG	8 cut(s)	31, 183, 613, 1129, 1585, 1650, 1900, 2004
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	3 cut(s)	797, 1405, 1822
BveI	ACCTGC	5 cut(s)	187, 464, 860, 1718, 2288
Cac8I	GCNNGC	3 cut(s)	90, 399, 1939
CfoI	GCGC	3 cut(s)	64, 403, 461
Cfr13I	GGNCC	2 cut(s)	1177, 1432
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	412, 667, 898, 1056
CviQI	GTAC	4 cut(s)	412, 667, 898, 1056
DdeI	CTNAG	9 cut(s)	339, 404, 612, 650, 670, 815, 1052, 1193, 1773
DpnI	GATC	7 cut(s)	427, 657, 813, 1289, 1575, 1814, 2539
DpnII	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
DraI	TTTAAA	1 cut(s)	625
DrdI	GACNNNNNNGTC	1 cut(s)	938
DseDI	GACNNNNNNGTC	1 cut(s)	938
Eam1104I	CTCTTC	2 cut(s)	306, 946
EarI	CTCTTC	2 cut(s)	306, 946
EciI	GGCGGA	1 cut(s)	1643
Ecl136II	GAGCTC	2 cut(s)	1051, 1681
Eco130I	CCWWGG	2 cut(s)	927, 1180
Eco147I	AGGCCT	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	1053, 1683
Eco31I	GGTCTC	1 cut(s)	948
Eco47III	AGCGCT	1 cut(s)	402
Eco53kI	GAGCTC	2 cut(s)	1051, 1681
Eco57I	CTGAAG	1 cut(s)	846
Eco81I	CCTNAGG	1 cut(s)	339
Eco91I	GGTNACC	1 cut(s)	2094
EcoICRI	GAGCTC	2 cut(s)	1051, 1681
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO65I	GGTNACC	1 cut(s)	2094
EcoRII	CCWGG	1 cut(s)	1993
EcoT14I	CCWWGG	2 cut(s)	927, 1180
EcoT22I	ATGCAT	2 cut(s)	183, 1321
EcoT38I	GRGCYC	2 cut(s)	1053, 1683
ErhI	CCWWGG	2 cut(s)	927, 1180
FalI	AAGNNNNNCTT	6 cut(s)	267, 299, 757, 789, 1131, 1163
FaqI	GGGAC	3 cut(s)	55, 84, 2055
FbaI	TGATCA	2 cut(s)	655, 1812
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	6 cut(s)	546, 1363, 2295, 2316, 2336, 2433
FokI	GGATG	8 cut(s)	38, 190, 620, 1136, 1592, 1637, 1907, 2011
FriOI	GRGCYC	2 cut(s)	1053, 1683
Fsp4HI	GCNGC	6 cut(s)	546, 1363, 2295, 2316, 2336, 2433
FspBI	CTAG	8 cut(s)	744, 908, 1101, 1281, 1469, 1749, 2123, 2528
GlaI	GCGC	3 cut(s)	63, 402, 460
GluI	GCNGC	6 cut(s)	546, 1363, 2295, 2316, 2336, 2433
GsuI	CTGGAG	1 cut(s)	2540
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	4 cut(s)	282, 926, 1178, 1433
HapII	CCGG	3 cut(s)	23, 1166, 1892
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	3 cut(s)	64, 403, 461
Hin6I	GCGC	3 cut(s)	62, 401, 459
HinP1I	GCGC	3 cut(s)	62, 401, 459
HincII	GTYRAC	1 cut(s)	1275
HindII	GTYRAC	1 cut(s)	1275
HindIII	AAGCTT	4 cut(s)	590, 714, 1355, 1953
HinfI	GANTC	8 cut(s)	858, 1083, 1460, 1615, 1760, 2102, 2196, 2399
HpaII	CCGG	3 cut(s)	23, 1166, 1892
HphI	GGTGA	3 cut(s)	268, 1325, 1455
Hpy166II	GTNNAC	8 cut(s)	54, 243, 647, 1145, 1275, 2109, 2213, 2440
Hpy188I	TCNGA	9 cut(s)	444, 523, 615, 660, 1287, 1528, 1678, 1797, 2158
Hpy188III	TCNNGA	8 cut(s)	301, 338, 744, 943, 1577, 1664, 1892, 2519
Hpy8I	GTNNAC	8 cut(s)	54, 243, 647, 1145, 1275, 2109, 2213, 2440
HpyAV	CCTTC	7 cut(s)	73, 272, 481, 799, 1559, 2214, 2363
HpyCH4III	ACNGT	4 cut(s)	253, 991, 1038, 1690
HpyCH4IV	ACGT	3 cut(s)	56, 665, 1647
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 1325, 2563
HpyF3I	CTNAG	9 cut(s)	339, 404, 612, 650, 670, 815, 1052, 1193, 1773
HpySE526I	ACGT	3 cut(s)	56, 665, 1647
HspAI	GCGC	3 cut(s)	62, 401, 459
Kpn2I	TCCGGA	1 cut(s)	1891
Ksp22I	TGATCA	2 cut(s)	655, 1812
Kzo9I	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
LmnI	GCTCC	3 cut(s)	634, 976, 1678
Lsp1109I	GCAGC	5 cut(s)	1349, 2306, 2322, 2327, 2444
LweI	GCATC	9 cut(s)	168, 598, 856, 1306, 1492, 1570, 1754, 2302, 2382
MaeI	CTAG	8 cut(s)	744, 908, 1101, 1281, 1469, 1749, 2123, 2528
MaeII	ACGT	3 cut(s)	56, 665, 1647
MaeIII	GTNAC	8 cut(s)	465, 829, 1150, 1487, 1780, 2006, 2094, 2342
MalI	GATC	7 cut(s)	427, 657, 813, 1289, 1575, 1814, 2539
MboI	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
MboII	GAAGA	9 cut(s)	181, 323, 821, 963, 1380, 1574, 2063, 2201, 2378
MfeI	CAATTG	1 cut(s)	1346
MflI	RGATCY	3 cut(s)	425, 811, 2537
MhlI	GDGCHC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
MlyI	GAGTC	5 cut(s)	852, 1609, 1769, 2096, 2205
MmeI	TCCRAC	3 cut(s)	307, 1821, 2515
Mph1103I	ATGCAT	2 cut(s)	183, 1321
MroI	TCCGGA	1 cut(s)	1891
MroXI	GAANNNNTTC	1 cut(s)	239
MseI	TTAA	8 cut(s)	371, 624, 914, 1394, 1803, 1863, 2175, 2220
MslI	CAYNNNNRTG	1 cut(s)	1122
MspA1I	CMGCKG	2 cut(s)	104, 2435
MspI	CCGG	3 cut(s)	23, 1166, 1892
MspR9I	CCNGG	1 cut(s)	1995
MunI	CAATTG	1 cut(s)	1346
Mva1269I	GAATGC	2 cut(s)	1023, 2488
MvaI	CCWGG	1 cut(s)	1995
MvnI	CGCG	2 cut(s)	64, 75
MwoI	GCNNNNNNNGC	3 cut(s)	89, 1325, 2563
NdeII	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
NlaIV	GGNNCC	2 cut(s)	231, 2539
NmeAIII	GCCGAG	1 cut(s)	2188
NmuCI	GTSAC	2 cut(s)	829, 1150
NsiI	ATGCAT	2 cut(s)	183, 1321
NspI	RCATGY	2 cut(s)	2322, 2363
PaqCI	CACCTGC	1 cut(s)	464
PceI	AGGCCT	1 cut(s)	282
PciI	ACATGT	1 cut(s)	2359
PctI	GAATGC	2 cut(s)	1023, 2488
PdmI	GAANNNNTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	1083, 1460, 2399
PkrI	GCNGC	6 cut(s)	547, 1364, 2296, 2317, 2337, 2434
PleI	GAGTC	5 cut(s)	852, 1609, 1768, 2096, 2204
PpsI	GAGTC	5 cut(s)	852, 1609, 1768, 2096, 2204
Ppu21I	YACGTR	1 cut(s)	57
PscI	ACATGT	1 cut(s)	2359
PshBI	ATTAAT	1 cut(s)	2175
Psp124BI	GAGCTC	2 cut(s)	1053, 1683
Psp6I	CCWGG	1 cut(s)	1993
PspEI	GGTNACC	1 cut(s)	2094
PspGI	CCWGG	1 cut(s)	1993
PspN4I	GGNNCC	2 cut(s)	231, 2539
PspPI	GGNCC	2 cut(s)	1177, 1432
PstI	CTGCAG	1 cut(s)	1367
PsuI	RGATCY	3 cut(s)	425, 811, 2537
PvuII	CAGCTG	2 cut(s)	104, 2435
RsaI	GTAC	4 cut(s)	413, 668, 899, 1057
RsaNI	GTAC	4 cut(s)	412, 667, 898, 1056
RseI	CAYNNNNRTG	1 cut(s)	1122
SacI	GAGCTC	2 cut(s)	1053, 1683
SaqAI	TTAA	8 cut(s)	371, 624, 914, 1394, 1803, 1863, 2175, 2220
SatI	GCNGC	6 cut(s)	546, 1363, 2295, 2316, 2336, 2433
Sau3AI	GATC	7 cut(s)	425, 655, 811, 1287, 1573, 1812, 2537
Sau96I	GGNCC	2 cut(s)	1177, 1432
SchI	GAGTC	5 cut(s)	852, 1609, 1769, 2096, 2205
ScrFI	CCNGG	1 cut(s)	1995
SduI	GDGCHC	6 cut(s)	56, 1053, 1194, 1671, 1683, 2442
SfaNI	GCATC	9 cut(s)	168, 598, 856, 1306, 1492, 1570, 1754, 2302, 2382
SfcI	CTRYAG	3 cut(s)	1363, 1689, 2454
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	5 cut(s)	299, 763, 1253, 1352, 1664
SmoI	CTYRAG	5 cut(s)	299, 763, 1253, 1352, 1664
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	4 cut(s)	64, 137, 545, 1654
SspMI	CTAG	8 cut(s)	744, 908, 1101, 1281, 1469, 1749, 2123, 2528
SstI	GAGCTC	2 cut(s)	1053, 1683
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	1993
StyI	CCWWGG	2 cut(s)	927, 1180
TaaI	ACNGT	4 cut(s)	253, 991, 1038, 1690
TaiI	ACGT	3 cut(s)	59, 668, 1650
TaqI	TCGA	2 cut(s)	1063, 1683
TaqII	GACCGA	1 cut(s)	972
TatI	WGTACW	2 cut(s)	897, 1055
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	3 cut(s)	1083, 1460, 2399
Tru1I	TTAA	8 cut(s)	371, 624, 914, 1394, 1803, 1863, 2175, 2220
Tru9I	TTAA	8 cut(s)	371, 624, 914, 1394, 1803, 1863, 2175, 2220
TscAI	CASTG	3 cut(s)	797, 1405, 1822
TseFI	GTSAC	2 cut(s)	829, 1150
TseI	GCWGC	5 cut(s)	1362, 2294, 2315, 2335, 2432
Tsp45I	GTSAC	2 cut(s)	829, 1150
TspRI	CASTG	3 cut(s)	797, 1405, 1822
VneI	GTGCAC	2 cut(s)	52, 2438
VspI	ATTAAT	1 cut(s)	2175
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	1332, 2508
XbaI	TCTAGA	1 cut(s)	743
XceI	RCATGY	2 cut(s)	2322, 2363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2500
XmiI	GTMKAC	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	239
XspI	CTAG	8 cut(s)	744, 908, 1101, 1281, 1469, 1749, 2123, 2528
Zsp2I	ATGCAT	2 cut(s)	183, 1321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.