Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009191

Physical Location & Seq

Genomic Coordinates Forward (+)

54603095 .. 54606668

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG428800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2781 bp

ATGGAGTCGCTCCATTTCAGCTCAAACTACTCCTCTTTTCTCTGTACCACTATTCCACTGACCACTTGTTCTCCCTTGAGCAGCTCAAGAAAACCCAAGATTCGCGTCCGCGTCCGCGTCCGAATCCGATCCTCGGTGACCCCAGACCCGTGGTCTCTCAGCGACGGAAACCCGGACCGGCCCAAGCCCAAGTCCAAGCACCCAAAGAACCCTCTCTCCGACGACAACGCCCGCCGCATAATCAAGTCCAAGGCCCTGTACCTGAGCGCCCTCCGCCGCAACCAGGGCCCACACGCCCAGACCCCTAAGTGGATCAAGAGGACGCCGGAGCAGATGGTCCGCTATTTGCAGGACGACAGAAACGGCCACCTCTACGGCCGCCACGTCGTCGCCGCCATCAAGCGCGTGCGGTCACTCTCCGAGAAGGCCGAGGGCGAGTACGACATGAGAACCGTCATGTCGTCTTTTGTGGGGAAGCTCAGCTTCAGAGAAATGTGCGTGGTGCTTAAGGAACAAAAGGGGTGGAGGCAAGTCAGGGACTTGTTTTCCTGGATGAAATTGCAGTTAAGCTACCGCCCAAGTGTGATTGTGTACACTATAGTTCTAAGGACATATGGGCAAATTGGGAAGATCAAGCTGGCTGAGCAGACCTTCTTGGAGATGCTTGAAGCTGGTTGTGAACCTGATGAAGTTGCCTGTGGAACCATGCTCTGCACATATGCCCGGTGGGGCCGCGAAAAGGCTATGCTGGCATTTTATTCAGCTGTGCAGGAAAGAGGGATTCTACTCTCTGTTGCTGTTTATAATTTCATGTTGTCCTCATTGCAGAAGAAATCGCTCCACGAGAAAGTCGTGCAGGTTTGGAGACAGATGGTGGGGGAGGGAGTTGTGCCGAATAAGTTTACTTATACTGTAGTGATTAGCTCGCTTGTGAAACAAGGCCTTGTTGAGGAGGCTCTCAAGAGTTTTGATGAGTGTAAGAGTGTTGGATTTGTTCCTGAGGAGGCCACTTATAGTTTGCTCATCAGTTTAAGCACCAAAAGTGGCGACTATGACCAAGCACTAAGATTGTATGAGGACATGAGATCTATGAAAATTGTTCCGAGCAACTACACCTGTGCTTCATTGCTCACTTTGTATTACAAAAAGGAGGATTATTCTAAAGCCCTTTCTCTCTTTTCAGAAATGGAGAGAGAGAAAATTACGGCTGATGAAGTCATATATGGGTTGCTGATTAGAATATATGGAAAGCTTGGTCTTTATGAGGATGCTCGGACAACATTTAAAGAGATGGAGCAGCTGGGTCTGCTTAGTGATCAGAAAACATATTTAGCAATGGCACAAGTCAATCTCAATTCAGGGGATTATGACAAAGCTTTGGAGGTCATTGAACTAATGAAGTCTAGAAACAACATTTGGCTCTCAAGGTTTGCTTATATTGTCTTATTGCAGTGTTATGTTATGAAGGAAGATCTTAGTTCTGCCGAAGTTACATTTCAGGCTCTATCCAAGACTGGACTCCCAGATGCAGGTTCTTGTAATGATATGCTCAATTTGTATACAAGACTCGACTTAATGGAAAAGGCCAAGGACTTTATTGTCCAGATAAGAAGAGACCGAGTAGAATTTGATGAGGAGCTTTGCAGAACTGTTATGAGTATATATTGCAAGGAGGGAATGGTTGGAGATACTGAACAATTAATAAAAGAGCTCAGCTCAAGTCCATTATTCAAAGATAGTAGATTCATCCAAACAATTTGTAGGGCTATGTATGAACACAAGGATGATGAACAACTTGAAGGTAAACTTGTGACCTTTTTCCAGCCGGATACTACAGCCCTTGGATTGGTGCTTAGTCTCTATCTTACAATTGGCAATATGAGTAAGACAGACAAAGTTGTGGCGTTGTTGCTTGAGAATTCTGGTGGCTTATCAACTACTAGTCAGCTCATCAGGAATATTATCAGAGATGGTGATGCAGATAAAGCAGAAATTCATATCAATCAATTGCTCAAGCTTGGCTGCAGAGTGGATAATGCAACAATTTCTTCTTTGATTAATTTATATGGAAAGAAACACAAGTTGAAAAAGGCCGAAGAGATATATACAGCATTTGCAGATTCACCTCTAGCTAAAAAGTTACTATGTAACTCACTGCTTGATGCTTATGCCAAATGTGGTAAATCAGAGGAAGCATACTCACTTTACAGACGGCTTACAGAAGAAGGGCATGATCTGGATGCTGTTGCCATCAGCATAGTTGTGAATGCTTTGACTCATAGTGGAAAACATAGAGAAGCAGAGAACGTCATCCGCCAAAGTCTTGAACACCGATTGGAGCTTGATACTGTGGCATACAATACTTTCATTAAGGCTATGCTGGGAGCAGGTAGGTTACATTTTGCTTCTAGTATCTATGAGTGTATGCTTTCTGAGGGGGTTACTCCATCAATTCAGACATATAACACCATGATCAGTGTTTACGGACGTGGTAGAAAGTTGGATAGGGCTGTGGAAATGTTTAATACAGCTTGTAGCTTGGGTTTGTCTCCGGATGAAAAGGCATACATGAATTTGATTAGCTACTATGGAAAAGCTGGAAAAAGGCATGAAGCTTCCATGCTATTCACCAAAATGCGTGAAAGCATAAAACCTGGAATGGTATACACAATTGCTGAAACTTCTGAGATAATGTTAAAAACAGATATAATAGATACTACAAATATATATTTACCAATACAGGTTCTATATTTGTCTTACTATGTAATTCTTGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

926

Amino Acids

105.24

Weight (kDa)

8.68

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	193 - 241	8.6e-08	PPR repeat family
PPR_long	PF17177	247 - 378	8.3e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	264 - 312	2.7e-09	PPR repeat family
PPR_long	PF17177	316 - 419	3.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_long	PF17177	382 - 495	9.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	716 - 758	4.1e-06	PPR repeat family
PPR_3	PF13812	779 - 829	1.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	782 - 828	8.6e-10	PPR repeat family
PPR_2	PF13041	816 - 856	4.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27270 AT5G27270 AT5G27270 AT5G27270 AT5G27270
fragaria_vesca	FvH4_7g33960 FvH4_7g33960
malus_domestica	MD01G1235800.v1.1
prunus_persica	Prupe.2G325900_v2.0.a1 Prupe.2G325900_v2.0.a1
pyrus_communis	pycom01g24390
rosa_chinensis	RchiOBHm_Chr1g0384191
rosa_laevigata	RLG00000026061
rosa_multiflora	Rmu_sc0005139.1_g000006 Rmu_sc0014578.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276870
rosa_rugosa	Rorug01G0445600
rosa_samantha	Rh1AG471100 Rh1BG428800 Rh1CG441500 Rh1DG461600
rosa_wichuraiana	Rw1G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AasI	GACNNNNNNGTC	1 cut(s)	1598
Acc36I	ACCTGC	3 cut(s)	847, 1520, 2378
AccI	GTMKAC	2 cut(s)	1559, 2664
AccII	CGCG	5 cut(s)	105, 111, 117, 405, 735
AccIII	TCCGGA	1 cut(s)	2551
AclWI	GGATC	2 cut(s)	123, 320
AcoI	YGGCCR	2 cut(s)	364, 376
AcsI	RAATTY	4 cut(s)	1625, 1918, 1992, 2572
AcuI	CTGAAG	1 cut(s)	469
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	4 cut(s)	46, 260, 440, 593
AfiI	CCNNNNNNNGG	7 cut(s)	133, 283, 309, 739, 949, 1529, 1846
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	668, 1391, 1732, 1799, 2086, 2327
AhdI	GACNNNNNGTC	1 cut(s)	151
AhlI	ACTAGT	1 cut(s)	1940
AjiI	CACGTC	2 cut(s)	385, 2489
AjnI	CCWGG	3 cut(s)	282, 548, 2653
AjuI	GAANNNNNNNTTGG	2 cut(s)	1399, 1431
AloI	GAACNNNNNNTCC	2 cut(s)	200, 232
Alw21I	GWGCWC	1 cut(s)	1713
Alw26I	GTCTC	5 cut(s)	159, 859, 1608, 1862, 2553
AlwI	GGATC	2 cut(s)	123, 320
Aor13HI	TCCGGA	1 cut(s)	2551
ApaI	GGGCCC	1 cut(s)	290
ApeKI	GCWGC	3 cut(s)	81, 1297, 2022
ApoI	RAATTY	4 cut(s)	1625, 1918, 1992, 2572
AseI	ATTAAT	2 cut(s)	1700, 2058
AspLEI	GCGC	2 cut(s)	269, 405
AspS9I	GGNCC	7 cut(s)	175, 180, 253, 286, 287, 337, 730
AsuC2I	CCSGG	2 cut(s)	173, 724
AsuHPI	GGTGA	4 cut(s)	148, 1985, 2115, 2620
AvaII	GGWCC	2 cut(s)	175, 337
AxyI	CCTNAGG	1 cut(s)	999
BaeGI	GKGCMC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	290, 1713
BauI	CACGAG	1 cut(s)	842
Bbv12I	GWGCWC	1 cut(s)	1713
BbvI	GCAGC	3 cut(s)	93, 1309, 2009
BccI	CCATC	7 cut(s)	328, 404, 865, 1285, 1964, 2258, 2455
BceAI	ACGGC	4 cut(s)	379, 391, 1221, 2228
BciT130I	CCWGG	3 cut(s)	284, 550, 2655
BciVI	GTATCC	1 cut(s)	1822
BclI	TGATCA	2 cut(s)	1315, 2472
BcnI	CCSGG	2 cut(s)	173, 724
BcoDI	GTCTC	5 cut(s)	159, 859, 1608, 1862, 2553
BcuI	ACTAGT	1 cut(s)	1940
BfaI	CTAG	4 cut(s)	1404, 1941, 2129, 2409
BfmI	CTRYAG	4 cut(s)	597, 912, 1833, 2023
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	3 cut(s)	847, 1520, 2378
BfuI	GTATCC	1 cut(s)	1822
BglII	AGATCT	2 cut(s)	1085, 1471
BisI	GCNGC	8 cut(s)	82, 235, 277, 379, 393, 733, 1298, 2023
BlpI	GCTNAGC	3 cut(s)	479, 642, 1712
BlsI	GCNGC	8 cut(s)	83, 236, 278, 380, 394, 734, 1299, 2024
Bme1390I	CCNGG	5 cut(s)	173, 284, 550, 724, 2655
Bme18I	GGWCC	2 cut(s)	175, 337
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmgBI	CACGTC	2 cut(s)	385, 2489
BmgT120I	GGNCC	7 cut(s)	175, 180, 253, 286, 287, 337, 730
BmiI	GGNNCC	3 cut(s)	288, 703, 731
BmrFI	CCNGG	5 cut(s)	173, 284, 550, 724, 2655
BmsI	GCATC	6 cut(s)	651, 1258, 1516, 1966, 2152, 2230
BplI	GAGNNNNNCTC	2 cut(s)	1700, 1732
Bpu10I	CCTNAGC	1 cut(s)	263
Bpu1102I	GCTNAGC	3 cut(s)	479, 642, 1712
BpuEI	CTTGAG	7 cut(s)	70, 97, 944, 1408, 1702, 1934, 1997
BpuMI	CCSGG	2 cut(s)	173, 724
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	2 cut(s)	159, 1608
BsaJI	CCNNGG	7 cut(s)	132, 149, 249, 283, 429, 1587, 1840
BsaWI	WCCGGW	1 cut(s)	2551
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 200, 230
Bsc4I	CCNNNNNNNGG	7 cut(s)	133, 283, 309, 739, 949, 1529, 1846
Bse118I	RCCGGY	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	1519
Bse21I	CCTNAGG	1 cut(s)	999
Bse3DI	GCAATG	3 cut(s)	821, 1124, 1341
BseAI	TCCGGA	1 cut(s)	2551
BseBI	CCWGG	3 cut(s)	284, 550, 2655
BseDI	CCNNGG	7 cut(s)	132, 149, 249, 283, 429, 1587, 1840
BseGI	GGATG	7 cut(s)	558, 1273, 1746, 1789, 2245, 2310, 2560
BseLI	CCNNNNNNNGG	7 cut(s)	133, 283, 309, 739, 949, 1529, 1846
BseMI	GCAATG	3 cut(s)	821, 1124, 1341
BseMII	CTCAG	8 cut(s)	172, 254, 493, 633, 990, 1726, 2424, 2676
BseNI	ACTGG	1 cut(s)	1519
BseRI	GAGGAG	4 cut(s)	22, 965, 1016, 1649
BseSI	GKGCMC	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	93, 1309, 2009
BseYI	CCCAGC	2 cut(s)	1300, 2380
BsgI	GTGCAG	3 cut(s)	697, 788, 875
Bsh1236I	CGCG	5 cut(s)	105, 111, 117, 405, 735
Bsh1285I	CGRYCG	1 cut(s)	379
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	1713
BsiSI	CCGG	6 cut(s)	173, 178, 326, 724, 1826, 2552
BslFI	GGGAC	1 cut(s)	551
BslI	CCNNNNNNNGG	7 cut(s)	133, 283, 309, 739, 949, 1529, 1846
BsmAI	GTCTC	5 cut(s)	159, 859, 1608, 1862, 2553
BsmFI	GGGAC	1 cut(s)	551
BsmI	GAATGC	1 cut(s)	2272
Bso31I	GGTCTC	2 cut(s)	159, 1608
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	290, 1713
Bsp13I	TCCGGA	1 cut(s)	2551
Bsp1407I	TGTACA	1 cut(s)	591
Bsp143I	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
Bsp1720I	GCTNAGC	3 cut(s)	479, 642, 1712
BspCNI	CTCAG	8 cut(s)	171, 255, 492, 634, 991, 1725, 2425, 2677
BspEI	TCCGGA	1 cut(s)	2551
BspFNI	CGCG	5 cut(s)	105, 111, 117, 405, 735
BspLI	GGNNCC	3 cut(s)	288, 703, 731
BspMAI	CTGCAG	1 cut(s)	2027
BspMI	ACCTGC	3 cut(s)	847, 1520, 2378
BspPI	GGATC	2 cut(s)	123, 320
BspTI	CTTAAG	1 cut(s)	506
BspTNI	GGTCTC	2 cut(s)	159, 1608
BsrDI	GCAATG	3 cut(s)	821, 1124, 1341
BsrFI	RCCGGY	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	591
BsrI	ACTGG	1 cut(s)	1519
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	7 cut(s)	132, 149, 249, 283, 429, 1587, 1840
BssMI	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
BssNAI	GTATAC	2 cut(s)	1560, 2665
BssNI	GRCGYC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	842
BssT1I	CCWWGG	3 cut(s)	249, 1587, 1840
Bst1107I	GTATAC	2 cut(s)	1560, 2665
Bst2BI	CACGAG	1 cut(s)	842
Bst2UI	CCWGG	3 cut(s)	284, 550, 2655
Bst4CI	ACNGT	4 cut(s)	454, 913, 1651, 2350
Bst6I	CTCTTC	2 cut(s)	1606, 2091
BstACI	GRCGYC	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	591
BstC8I	GCNNGC	5 cut(s)	232, 407, 639, 750, 926
BstDSI	CCRYGG	1 cut(s)	149
BstEII	GGTNACC	1 cut(s)	136
BstENI	CCTNNNNNAGG	1 cut(s)	947
BstF5I	GGATG	7 cut(s)	558, 1273, 1746, 1789, 2245, 2310, 2560
BstFNI	CGCG	5 cut(s)	105, 111, 117, 405, 735
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	269, 405
BstKTI	GATC	8 cut(s)	131, 315, 633, 1088, 1318, 1474, 2236, 2475
BstMAI	GTCTC	5 cut(s)	159, 859, 1608, 1862, 2553
BstMBI	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	6 cut(s)	273, 285, 643, 749, 1306, 1985
BstNI	CCWGG	3 cut(s)	284, 550, 2655
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	5 cut(s)	171, 282, 548, 722, 2653
BstSFI	CTRYAG	4 cut(s)	597, 912, 1833, 2023
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	5 cut(s)	105, 111, 117, 405, 735
BstV1I	GCAGC	3 cut(s)	93, 1309, 2009
BstX2I	RGATCY	2 cut(s)	1085, 1471
BstXI	CCANNNNNNTGG	1 cut(s)	150
BstYI	RGATCY	2 cut(s)	1085, 1471
BstZ17I	GTATAC	2 cut(s)	1560, 2665
BstZI	CGGCCG	1 cut(s)	376
Bsu36I	CCTNAGG	1 cut(s)	999
BsuI	GTATCC	1 cut(s)	1822
BtgI	CCRYGG	1 cut(s)	149
BtrI	CACGTC	2 cut(s)	385, 2489
BtsCI	GGATG	7 cut(s)	558, 1273, 1746, 1789, 2245, 2310, 2560
BtsI	GCAGTG	2 cut(s)	1457, 2153
BtsIMutI	CAGTG	4 cut(s)	56, 1457, 2153, 2482
BveI	ACCTGC	3 cut(s)	847, 1520, 2378
Cac8I	GCNNGC	5 cut(s)	232, 407, 639, 750, 926
CfoI	GCGC	2 cut(s)	269, 405
Cfr10I	RCCGGY	1 cut(s)	177
Cfr13I	GGNCC	7 cut(s)	175, 180, 253, 286, 287, 337, 730
CpoI	CGGWCCG	1 cut(s)	175
CseI	GACGC	4 cut(s)	94, 100, 106, 331
Csp6I	GTAC	4 cut(s)	45, 259, 439, 592
CspCI	CAANNNNNGTGG	2 cut(s)	503, 538
CspI	CGGWCCG	1 cut(s)	175
CviQI	GTAC	4 cut(s)	45, 259, 439, 592
DpnI	GATC	8 cut(s)	130, 314, 632, 1087, 1317, 1473, 2235, 2474
DpnII	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
DraI	TTTAAA	1 cut(s)	1285
DrdI	GACNNNNNNGTC	1 cut(s)	1598
DriI	GACNNNNNGTC	1 cut(s)	151
DseDI	GACNNNNNNGTC	1 cut(s)	1598
EaeI	YGGCCR	2 cut(s)	364, 376
EagI	CGGCCG	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	1606, 2091
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	2 cut(s)	1606, 2091
EciI	GGCGGA	2 cut(s)	263, 2303
Ecl136II	GAGCTC	1 cut(s)	1711
EclXI	CGGCCG	1 cut(s)	376
Eco130I	CCWWGG	3 cut(s)	249, 1587, 1840
Eco147I	AGGCCT	1 cut(s)	942
Eco24I	GRGCYC	2 cut(s)	290, 1713
Eco31I	GGTCTC	2 cut(s)	159, 1608
Eco47I	GGWCC	2 cut(s)	175, 337
Eco52I	CGGCCG	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	1711
Eco57I	CTGAAG	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	999
Eco91I	GGTNACC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	1711
EcoNI	CCTNNNNNAGG	1 cut(s)	947
EcoO109I	RGGNCCY	2 cut(s)	253, 286
EcoO65I	GGTNACC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	1918
EcoRII	CCWGG	3 cut(s)	282, 548, 2653
EcoT14I	CCWWGG	3 cut(s)	249, 1587, 1840
EcoT38I	GRGCYC	2 cut(s)	290, 1713
ErhI	CCWWGG	3 cut(s)	249, 1587, 1840
FalI	AAGNNNNNCTT	6 cut(s)	467, 499, 1417, 1449, 1791, 1823
FaqI	GGGAC	1 cut(s)	551
FauI	CCCGC	1 cut(s)	239
FauNDI	CATATG	2 cut(s)	613, 718
FbaI	TGATCA	2 cut(s)	1315, 2472
FblI	GTMKAC	2 cut(s)	1559, 2664
Fnu4HI	GCNGC	8 cut(s)	82, 235, 277, 379, 393, 733, 1298, 2023
FokI	GGATG	7 cut(s)	565, 1280, 1733, 1796, 2252, 2297, 2567
FriOI	GRGCYC	2 cut(s)	290, 1713
Fsp4HI	GCNGC	8 cut(s)	82, 235, 277, 379, 393, 733, 1298, 2023
FspBI	CTAG	4 cut(s)	1404, 1941, 2129, 2409
GlaI	GCGC	2 cut(s)	268, 404
GluI	GCNGC	8 cut(s)	82, 235, 277, 379, 393, 733, 1298, 2023
GsaI	CCCAGC	2 cut(s)	1304, 2384
HaeII	RGCGCY	1 cut(s)	270
HapII	CCGG	6 cut(s)	173, 178, 326, 724, 1826, 2552
HgaI	GACGC	4 cut(s)	94, 100, 106, 331
HhaI	GCGC	2 cut(s)	269, 405
Hin1I	GRCGYC	1 cut(s)	323
Hin6I	GCGC	2 cut(s)	267, 403
HinP1I	GCGC	2 cut(s)	267, 403
HindIII	AAGCTT	4 cut(s)	1250, 1374, 2015, 2613
HinfI	GANTC	9 cut(s)	5, 100, 123, 781, 1518, 1566, 1743, 2120, 2275
HpaII	CCGG	6 cut(s)	173, 178, 326, 724, 1826, 2552
HphI	GGTGA	4 cut(s)	148, 1985, 2115, 2620
Hpy166II	GTNNAC	8 cut(s)	592, 594, 680, 903, 1560, 1805, 2482, 2665
Hpy8I	GTNNAC	8 cut(s)	592, 594, 680, 903, 1560, 1805, 2482, 2665
Hpy99I	CGWCG	4 cut(s)	167, 224, 389, 392
HpyAV	CCTTC	5 cut(s)	418, 661, 1459, 1793, 2219
HpyCH4III	ACNGT	4 cut(s)	454, 913, 1651, 2350
HpyCH4IV	ACGT	3 cut(s)	384, 2307, 2488
HpyF10VI	GCNNNNNNNGC	6 cut(s)	273, 285, 643, 749, 1306, 1985
HpySE526I	ACGT	3 cut(s)	384, 2307, 2488
Hsp92I	GRCGYC	1 cut(s)	323
HspAI	GCGC	2 cut(s)	267, 403
Kpn2I	TCCGGA	1 cut(s)	2551
Ksp22I	TGATCA	2 cut(s)	1315, 2472
Kzo9I	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
LmnI	GCTCC	7 cut(s)	15, 328, 843, 1294, 1636, 2338, 2384
Lsp1109I	GCAGC	3 cut(s)	93, 1309, 2009
LweI	GCATC	6 cut(s)	651, 1258, 1516, 1966, 2152, 2230
MaeI	CTAG	4 cut(s)	1404, 1941, 2129, 2409
MaeII	ACGT	3 cut(s)	384, 2307, 2488
MaeIII	GTNAC	8 cut(s)	136, 411, 1489, 1810, 2139, 2147, 2394, 2440
MalI	GATC	8 cut(s)	130, 314, 632, 1087, 1317, 1473, 2235, 2474
MboI	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
MboII	GAAGA	7 cut(s)	640, 841, 1481, 1623, 2040, 2108, 2234
MfeI	CAATTG	3 cut(s)	1869, 2006, 2670
MflI	RGATCY	2 cut(s)	1085, 1471
MhlI	GDGCHC	2 cut(s)	290, 1713
MlyI	GAGTC	4 cut(s)	14, 1512, 1560, 2269
MmeI	TCCRAC	4 cut(s)	243, 967, 1663, 2481
MroI	TCCGGA	1 cut(s)	2551
MslI	CAYNNNNRTG	3 cut(s)	1782, 2261, 2633
MspA1I	CMGCKG	2 cut(s)	764, 1300
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	6 cut(s)	173, 178, 326, 724, 1826, 2552
MspR9I	CCNGG	5 cut(s)	173, 284, 550, 724, 2655
MunI	CAATTG	3 cut(s)	1869, 2006, 2670
Mva1269I	GAATGC	1 cut(s)	2272
MvaI	CCWGG	3 cut(s)	284, 550, 2655
MvnI	CGCG	5 cut(s)	105, 111, 117, 405, 735
MwoI	GCNNNNNNNGC	6 cut(s)	273, 285, 643, 749, 1306, 1985
NciI	CCSGG	2 cut(s)	173, 724
NdeI	CATATG	2 cut(s)	613, 718
NdeII	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
NlaIV	GGNNCC	3 cut(s)	288, 703, 731
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	3 cut(s)	136, 411, 1810
PceI	AGGCCT	1 cut(s)	942
PcsI	WCGNNNNNNNCGW	2 cut(s)	381, 849
PctI	GAATGC	1 cut(s)	2272
PfeI	GAWTC	5 cut(s)	100, 123, 781, 1743, 2120
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	8 cut(s)	83, 236, 278, 380, 394, 734, 1299, 2024
PleI	GAGTC	4 cut(s)	13, 1512, 1560, 2269
PpsI	GAGTC	4 cut(s)	13, 1512, 1560, 2269
PshBI	ATTAAT	2 cut(s)	1700, 2058
PsiI	TTATAA	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	1713
Psp6I	CCWGG	3 cut(s)	282, 548, 2653
PspEI	GGTNACC	1 cut(s)	136
PspFI	CCCAGC	2 cut(s)	1300, 2380
PspGI	CCWGG	3 cut(s)	282, 548, 2653
PspN4I	GGNNCC	3 cut(s)	288, 703, 731
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	7 cut(s)	175, 180, 253, 286, 287, 337, 730
PstI	CTGCAG	1 cut(s)	2027
PsuI	RGATCY	2 cut(s)	1085, 1471
PvuII	CAGCTG	2 cut(s)	764, 1300
RsaI	GTAC	4 cut(s)	46, 260, 440, 593
RsaNI	GTAC	4 cut(s)	45, 259, 439, 592
RseI	CAYNNNNRTG	3 cut(s)	1782, 2261, 2633
Rsr2I	CGGWCCG	1 cut(s)	175
RsrII	CGGWCCG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	1713
SatI	GCNGC	8 cut(s)	82, 235, 277, 379, 393, 733, 1298, 2023
Sau3AI	GATC	8 cut(s)	128, 312, 630, 1085, 1315, 1471, 2233, 2472
Sau96I	GGNCC	7 cut(s)	175, 180, 253, 286, 287, 337, 730
SchI	GAGTC	4 cut(s)	14, 1512, 1560, 2269
ScrFI	CCNGG	5 cut(s)	173, 284, 550, 724, 2655
SduI	GDGCHC	2 cut(s)	290, 1713
SfaNI	GCATC	6 cut(s)	651, 1258, 1516, 1966, 2152, 2230
SfcI	CTRYAG	4 cut(s)	597, 912, 1833, 2023
SinI	GGWCC	2 cut(s)	175, 337
SmiMI	CAYNNNNRTG	3 cut(s)	1782, 2261, 2633
SmlI	CTYRAG	9 cut(s)	76, 85, 506, 959, 1423, 1717, 1913, 2012, 2771
SmoI	CTYRAG	9 cut(s)	76, 85, 506, 959, 1423, 1717, 1913, 2012, 2771
SpeI	ACTAGT	1 cut(s)	1940
SseBI	AGGCCT	1 cut(s)	942
SspI	AATATT	1 cut(s)	1960
SspMI	CTAG	4 cut(s)	1404, 1941, 2129, 2409
SstI	GAGCTC	1 cut(s)	1713
StuI	AGGCCT	1 cut(s)	942
StyD4I	CCNGG	5 cut(s)	171, 282, 548, 722, 2653
StyI	CCWWGG	3 cut(s)	249, 1587, 1840
TaaI	ACNGT	4 cut(s)	454, 913, 1651, 2350
TaiI	ACGT	3 cut(s)	387, 2310, 2491
TaqI	TCGA	1 cut(s)	1569
TaqII	GACCGA	1 cut(s)	1632
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	5 cut(s)	237, 279, 381, 395, 735
TfiI	GAWTC	5 cut(s)	100, 123, 781, 1743, 2120
TscAI	CASTG	4 cut(s)	63, 1457, 2160, 2482
TseFI	GTSAC	3 cut(s)	136, 411, 1810
TseI	GCWGC	3 cut(s)	81, 1297, 2022
Tsp45I	GTSAC	3 cut(s)	136, 411, 1810
TspGWI	ACGGA	2 cut(s)	180, 2499
TspRI	CASTG	4 cut(s)	63, 1457, 2160, 2482
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	175, 337
VspI	ATTAAT	2 cut(s)	1700, 2058
XagI	CCTNNNNNAGG	1 cut(s)	947
XapI	RAATTY	4 cut(s)	1625, 1918, 1992, 2572
XbaI	TCTAGA	1 cut(s)	1403
XmiI	GTMKAC	2 cut(s)	1559, 2664
XspI	CTAG	4 cut(s)	1404, 1941, 2129, 2409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.