Rroxscaffold_4G00276870

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0009191
Physical Location & Seq
Reverse (-)
318019 .. 322959
4941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276870.1

Sequence Viewer

Length: 3222 bp
ATGGAGTCGCTCCATTTCAGCTCAAACTACTCCTCTTTTCTCTGTACCACTATTCCACTGACCACTTCTTCTCCCTTGAGCAGCTCAAGAAAACCTAAGATTCGCGTCCGCGTCCGATCCTCAGTGACCCCAGACCCGTGGTCTCTCAGCGACGGAAACCCGGACCGGCCCAAGCCCAAGTCCAAGCACCCAAAGAACCTTCTCTCCGACGACAACGCCCGCCGCATAATCAAGTCCAAGGCCCTGTACCTGAGCGCCCTCCGCCGCAACCAGGGCCCACACGCCCAGACCCCTAAGTGGATCAAGAGGACGCCGGAGCAGATGGTCCGCTATTTGCAGGACGACAGAAACGGCCACCTCTACGGCCGCCACGTCGTCGCCGCCATCAAGCGCGTGAGGTCACTCTCCGAGAAGGCCGAGGGCGAGTACGACATGAGAACCGTCATGTCGTCTTTTGTGGGGAAGCTCAGCTTCAGAGAAATGTGCGTGGTGCTTAAGGAACAAAAGGGGTGGAGGCAAGTCAGGGACTTGTTTTCCTGGATGAAATTGCAGTTAAGCTACCGCCCAAGTGTGATTGTGTACACTATAGTTCTAAGGACATATGGGCAAATTGGGAAGATCAAGCTCGCTGAGCAGACCTTCTTGGAGATGCTTGAAGCTGGTTGTGAACCAGATGAAGTTGCCTGTGGAACCATGCTCTGCACATATGCCCGGTGGGGCCGCGAAAAGGCTATGCTGGCATTTTATTCAGCTGTGCAAGAAAGAGGGATTCTACTTTCTGTTGCAGTGTATAATTTCATGTTGTCCTCCTTGCAGAAGAAATCGCTCCACGAAAAAGTCGTGCAGGTTTGGAGACAGATGGTGGGGGAGGGAGTGGCGCCGAATAAGTTTACTTATACTGTAGTGATTAGCTCGCTTGTCAAACAAGGCCTCATTGAGGAGGCTTTCAAGTGTTTTGATGAGTTTAAGAGTGTTGGATTTGTTCCTGAGGAGGCGACTTATAGTTTGCTCATCAGTTTAAGCACCAAAAGTGGCGACTATGACCAAGCACTAAGATTGTATGAGGACATGAGATCTGTGAAAATTGTTCCGAGCAACTACACCTGTGCTTCATTGCTCACTTTGTATTACAAAAAGGAGGATTATTCTAAAGCCCTTTCTCTCTTTTCAGAAATGGAGAGAGAGAAAATTGCGGCTGATGAAGTCATATATGGGTTGCTGATTAGAATATATGGAAAGCTTGGTCTTTATGAGGATGCTCGGACAACATTTAAAGAGATGGAGCAGCTGGGTCTACTTAGTGATCAGAAAACATATTTAGCAATGGCACAAGTCAATCTCAATTCAGGGGATTATGACAAAGCTTTGGAGGTCATTGAACTAATGAAGTCTAGAAACAACATTTGGCTCTCAAGGTTTGCTTACATTGTCTTATTGCAGTGTTATGTTATGAAGGAAGATCTTAGTTCTGCCGAAGTTACATTTCAGGCTCTATCCAAGACAGGACTCCCAGATGCAGGTTCTTGTAATGATATGCTCAATTTGTATATAAGACTCGACTTAATGGAAAAGGCCAAGGACTTTATTGTCCAGATAAGAAGAGACCGAGTAGAATTTGACGAGGAGCTTTGCAGAACAGTTATGAGTATATATTGCAAGGAGGGAATGGTTGGAGATACTGAACAGTTAATAAAAGAGCTCAGCTCAAGTCCATTATTCAAAGATAGTAGATTCATCCAAACAATTTGTAGGGCTATGTATGAACACAAGGATGATGAACAACTTGAAGGTAAACCTGTGACCTTTTTCCAGCCGGATACTACAGCCCTTGGATTGGTGCTTAGTCTCTGTCTTGCAAATGGCAATATGAGTAAGAAAGACAAAGTTGTGGCGTTGTTGCTTGAGAATTCTGGTGGCTTATCAACTGCTAGTCAGCTCATCAGGAATATTATCAGAGATGGTGATGCATATAAAGCAGAAATTCATATCAATCAATTGCTCAAGCTTGGCTGCAGAGTGGATAATGCAACAATTTCTTCTTTGATTAATTTATATGGAAAGAAACACAAGCTGAAAAAGGCCGAAGAGATATATACAGCATTTGCAGATTCACCTCTAGCTAAAAAGTTACTATGTAACTCACTGCTTGATGCTTATGCCAAATGTGGTAAATCAGAGGAAGCATACTCACTTTACAGACGGCTTACAGAAGAAGGGCATGATCTGGATGCTGTTGCCATCAGCATAGTTGTGAATGCTTTGACTCATAGTGGAAAACATAGAGAAGCAGAGAACGTCATCCGCCAAAGTCTTGAACACCGATTGGAGCTTGATACTGTGGCATACAATACTTTCATTAAGGCTATGCTGGGAGCAGGTAGGTTACATTTTGCTTCTAGTATCTATGAGTGCATGCTTTCTGAGGGGGTTACTCCATCAATTCAGACATATAACACCATGATCAGTGTTTACGGACGTGGTAGAAAGTTGGATAGGGCTGTGGAAATGTTTAATACAGCTTGTTGCTTGGGTTTGTCTCCGGATGAAAAGGCATACATGAATTTGATTAGCTACTATGGAAAAGCTGGAAAAAGACACGAAGCTTCCATGCTATTCACCAAAATGCGTGAAAGCATAAAACCTGGAAAGGTAAGTTACAATATAATGATGAATGTATATGCTACTGGAGGACTTTATCAAGAAGCTGAGAAATTATTCAAAGCCATGAAGCAAGATGGTTGGTTACCTGACTCATTCACTTACCTCTCCCTAGTTCGAGCTTACACAGAGAATTTGAAATATTCAGAAGCAGAGGGAACCATTAATTCTATGCAAGAAGACGGTGTCTATCCTTCATGTTCACATTTTAACCTCATTCTCTCTGCTTTTGCCAAAATGGGATTGATAGGGGAAGCAGAAAGAGTTTATGAGGAACTACTTGCAGCAGGTTTAAGCCCAGATGCAGCTTGTTATGGGACTATGCTGCGAGGTTACATGGACTACGGACACGTGGAAGAAGGCATCAAGTTCTATGAACAAATAAGTGAGTCTATAAAGGCAGACAGGTTTATTTTGAGTGCAGCTGTGCATTTTTACAGATCTGTAGGAAAGGAAGTAGAAGCTCAGAGTGTTTTGCATTCCATGAGTAGCATGGGAATTTCATTTCTGGAGAACCTAGAAGTTGGATCCAAGCTAAAATCTCCGCCAATATTGCAGAACTGA

Protein Analysis

1073

Amino Acids

121.31

Weight (kDa)

8.37

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 189 - 237 1e-07 PPR repeat family
PPR_long PF17177 243 - 375 3.7e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 260 - 308 1.9e-09 PPR repeat family
PPR PF01535 297 - 327 8.6e-06 PPR repeat
PPR_2 PF13041 301 - 339 2.3e-06 PPR repeat family
PPR_long PF17177 312 - 415 6.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_long PF17177 378 - 491 1.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 712 - 754 4.9e-06 PPR repeat family
PPR_3 PF13812 775 - 825 1.7e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 778 - 824 1e-09 PPR repeat family
PPR_2 PF13041 812 - 852 7.4e-06 PPR repeat family
PPR_2 PF13041 847 - 890 2.1e-06 PPR repeat family
PPR_2 PF13041 881 - 928 4.4e-11 PPR repeat family
PPR PF01535 884 - 913 7.5e-07 PPR repeat
PPR_long PF17177 900 - 1017 1.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 904 - 965 1.2e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 955 - 998 1.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1586
Acc36I ACCTGC 4 cut(s) 835, 1508, 2366, 2936
AccB1I GGYRCC 1 cut(s) 877
AccI GTMKAC 1 cut(s) 1294
AccII CGCG 4 cut(s) 105, 111, 393, 723
AccIII TCCGGA 1 cut(s) 2539
AclWI GGATC 4 cut(s) 111, 308, 3180, 3193
AcoI YGGCCR 2 cut(s) 352, 364
AcsI RAATTY 6 cut(s) 1613, 1906, 1980, 2560, 2791, 3156
AcuI CTGAAG 1 cut(s) 457
AcvI CACGTG 1 cut(s) 3010
AcyI GRCGYC 2 cut(s) 311, 878
AfaI GTAC 4 cut(s) 46, 248, 428, 581
AfiI CCNNNNNNNGG 6 cut(s) 271, 297, 727, 937, 1517, 1834
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 3007
AgsI TTSAA 8 cut(s) 656, 949, 1379, 1720, 1787, 2315, 2719, 2797
AhdI GACNNNNNGTC 1 cut(s) 139
AjiI CACGTC 2 cut(s) 373, 2477
AjnI CCWGG 3 cut(s) 270, 536, 2641
AjuI GAANNNNNNNTTGG 2 cut(s) 1387, 1419
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
Alw21I GWGCWC 1 cut(s) 1701
Alw26I GTCTC 5 cut(s) 147, 847, 1596, 1850, 2541
AlwI GGATC 4 cut(s) 111, 308, 3180, 3193
Aor13HI TCCGGA 1 cut(s) 2539
ApaI GGGCCC 1 cut(s) 278
ApeKI GCWGC 7 cut(s) 81, 1285, 2010, 2942, 2963, 2983, 3080
ApoI RAATTY 6 cut(s) 1613, 1906, 1980, 2560, 2791, 3156
ArsI GACNNNNNNTTYG 2 cut(s) 988, 1020
AseI ATTAAT 2 cut(s) 2046, 2823
Asp700I GAANNNNTTC 1 cut(s) 2714
AspLEI GCGC 3 cut(s) 257, 393, 880
AspS9I GGNCC 7 cut(s) 163, 168, 241, 274, 275, 325, 718
AsuC2I CCSGG 2 cut(s) 161, 712
AsuHPI GGTGA 3 cut(s) 1973, 2103, 2608
AvaII GGWCC 2 cut(s) 163, 325
AxyI CCTNAGG 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 3185
BanI GGYRCC 1 cut(s) 877
BanII GRGCYC 2 cut(s) 278, 1701
BbrPI CACGTG 1 cut(s) 3010
BbsI GAAGAC 1 cut(s) 2844
Bbv12I GWGCWC 1 cut(s) 1701
BbvI GCAGC 7 cut(s) 93, 1297, 1997, 2954, 2970, 2975, 3092
BccI CCATC 8 cut(s) 316, 392, 853, 1273, 1952, 2246, 2443, 2729
BceAI ACGGC 3 cut(s) 367, 379, 2216
BciT130I CCWGG 3 cut(s) 272, 538, 2643
BciVI GTATCC 1 cut(s) 1810
BclI TGATCA 2 cut(s) 1303, 2460
BcnI CCSGG 2 cut(s) 161, 712
BcoDI GTCTC 5 cut(s) 147, 847, 1596, 1850, 2541
BfaI CTAG 6 cut(s) 1392, 1929, 2117, 2397, 2771, 3176
BfmI CTRYAG 5 cut(s) 585, 900, 1821, 2011, 3102
BfoI RGCGCY 2 cut(s) 258, 881
BfrI CTTAAG 1 cut(s) 494
BfuAI ACCTGC 4 cut(s) 835, 1508, 2366, 2936
BfuI GTATCC 1 cut(s) 1810
BglII AGATCT 3 cut(s) 1073, 1459, 3098
BlpI GCTNAGC 3 cut(s) 467, 630, 1700
Bme1390I CCNGG 5 cut(s) 161, 272, 538, 712, 2643
Bme18I GGWCC 2 cut(s) 163, 325
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgBI CACGTC 2 cut(s) 373, 2477
BmgT120I GGNCC 7 cut(s) 163, 168, 241, 274, 275, 325, 718
BmiI GGNNCC 6 cut(s) 276, 691, 719, 879, 2818, 3187
BmrFI CCNGG 5 cut(s) 161, 272, 538, 712, 2643
BmsI GCATC 8 cut(s) 639, 1246, 1504, 1954, 2140, 2218, 2950, 3030
BpiI GAAGAC 1 cut(s) 2844
BplI GAGNNNNNCTC 2 cut(s) 1688, 1720
BpmI CTGGAG 2 cut(s) 2706, 3188
Bpu10I CCTNAGC 1 cut(s) 251
Bpu1102I GCTNAGC 3 cut(s) 467, 630, 1700
BpuEI CTTGAG 6 cut(s) 70, 97, 1396, 1690, 1922, 1985
BpuMI CCSGG 2 cut(s) 161, 712
BsaAI YACGTR 1 cut(s) 3010
BsaHI GRCGYC 2 cut(s) 311, 878
BsaI GGTCTC 2 cut(s) 147, 1596
BsaJI CCNNGG 6 cut(s) 137, 237, 271, 417, 1575, 1828
BsaWI WCCGGW 1 cut(s) 2539
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 188, 218
Bsc4I CCNNNNNNNGG 6 cut(s) 271, 297, 727, 937, 1517, 1834
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 2689
Bse21I CCTNAGG 1 cut(s) 987
Bse3DI GCAATG 2 cut(s) 1112, 1329
BseAI TCCGGA 1 cut(s) 2539
BseBI CCWGG 3 cut(s) 272, 538, 2643
BseDI CCNNGG 6 cut(s) 137, 237, 271, 417, 1575, 1828
BseGI GGATG 7 cut(s) 546, 1261, 1734, 1777, 2233, 2298, 2548
BseLI CCNNNNNNNGG 6 cut(s) 271, 297, 727, 937, 1517, 1834
BseMI GCAATG 2 cut(s) 1112, 1329
BseNI ACTGG 1 cut(s) 2689
BseRI GAGGAG 4 cut(s) 22, 953, 1004, 1637
BseSI GKGCMC 1 cut(s) 278
BseX3I CGGCCG 1 cut(s) 364
BseXI GCAGC 7 cut(s) 93, 1297, 1997, 2954, 2970, 2975, 3092
BseYI CCCAGC 2 cut(s) 1288, 2368
BsgI GTGCAG 3 cut(s) 685, 863, 3099
Bsh1236I CGCG 4 cut(s) 105, 111, 393, 723
Bsh1285I CGRYCG 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 877
BsiEI CGRYCG 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 1701
BsiSI CCGG 6 cut(s) 161, 166, 314, 712, 1814, 2540
BslFI GGGAC 2 cut(s) 539, 2989
BslI CCNNNNNNNGG 6 cut(s) 271, 297, 727, 937, 1517, 1834
BsmAI GTCTC 5 cut(s) 147, 847, 1596, 1850, 2541
BsmFI GGGAC 2 cut(s) 539, 2989
BsmI GAATGC 2 cut(s) 2260, 3136
Bso31I GGTCTC 2 cut(s) 147, 1596
Bsp120I GGGCCC 1 cut(s) 274
Bsp1286I GDGCHC 2 cut(s) 278, 1701
Bsp13I TCCGGA 1 cut(s) 2539
Bsp1407I TGTACA 1 cut(s) 579
Bsp1720I GCTNAGC 3 cut(s) 467, 630, 1700
BspEI TCCGGA 1 cut(s) 2539
BspFNI CGCG 4 cut(s) 105, 111, 393, 723
BspLI GGNNCC 6 cut(s) 276, 691, 719, 879, 2818, 3187
BspMAI CTGCAG 1 cut(s) 2015
BspMI ACCTGC 4 cut(s) 835, 1508, 2366, 2936
BspPI GGATC 4 cut(s) 111, 308, 3180, 3193
BspT107I GGYRCC 1 cut(s) 877
BspTI CTTAAG 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 147, 1596
BsrDI GCAATG 2 cut(s) 1112, 1329
BsrFI RCCGGY 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 579
BsrI ACTGG 1 cut(s) 2689
BssAI RCCGGY 1 cut(s) 165
BssECI CCNNGG 6 cut(s) 137, 237, 271, 417, 1575, 1828
BssNI GRCGYC 2 cut(s) 311, 878
BssT1I CCWWGG 3 cut(s) 237, 1575, 1828
Bst2UI CCWGG 3 cut(s) 272, 538, 2643
Bst4CI ACNGT 6 cut(s) 442, 901, 1639, 1686, 2338, 2843
Bst6I CTCTTC 2 cut(s) 1594, 2079
BstACI GRCGYC 2 cut(s) 311, 878
BstAFI CTTAAG 1 cut(s) 494
BstAUI TGTACA 1 cut(s) 579
BstBAI YACGTR 1 cut(s) 3010
BstC8I GCNNGC 5 cut(s) 220, 627, 738, 914, 2414
BstDSI CCRYGG 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 2742
BstENI CCTNNNNNAGG 1 cut(s) 935
BstF5I GGATG 7 cut(s) 546, 1261, 1734, 1777, 2233, 2298, 2548
BstFNI CGCG 4 cut(s) 105, 111, 393, 723
BstH2I RGCGCY 2 cut(s) 258, 881
BstHHI GCGC 3 cut(s) 257, 393, 880
BstMAI GTCTC 5 cut(s) 147, 847, 1596, 1850, 2541
BstMCI CGRYCG 1 cut(s) 367
BstMWI GCNNNNNNNGC 6 cut(s) 261, 273, 631, 737, 1973, 3211
BstNI CCWGG 3 cut(s) 272, 538, 2643
BstNSI RCATGY 1 cut(s) 2416
BstPI GGTNACC 1 cut(s) 2742
BstSCI CCNGG 5 cut(s) 159, 270, 536, 710, 2641
BstSFI CTRYAG 5 cut(s) 585, 900, 1821, 2011, 3102
BstSLI GKGCMC 1 cut(s) 278
BstUI CGCG 4 cut(s) 105, 111, 393, 723
BstV1I GCAGC 7 cut(s) 93, 1297, 1997, 2954, 2970, 2975, 3092
BstV2I GAAGAC 1 cut(s) 2844
BstX2I RGATCY 4 cut(s) 1073, 1459, 3098, 3185
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 4 cut(s) 1073, 1459, 3098, 3185
BstZI CGGCCG 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 987
BsuI GTATCC 1 cut(s) 1810
BtgI CCRYGG 1 cut(s) 137
BtrI CACGTC 2 cut(s) 373, 2477
BtsCI GGATG 7 cut(s) 546, 1261, 1734, 1777, 2233, 2298, 2548
BtsI GCAGTG 3 cut(s) 792, 1445, 2141
BtsIMutI CAGTG 6 cut(s) 56, 129, 792, 1445, 2141, 2470
BveI ACCTGC 4 cut(s) 835, 1508, 2366, 2936
Cac8I GCNNGC 5 cut(s) 220, 627, 738, 914, 2414
CfoI GCGC 3 cut(s) 257, 393, 880
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 7 cut(s) 163, 168, 241, 274, 275, 325, 718
CpoI CGGWCCG 1 cut(s) 163
CseI GACGC 3 cut(s) 94, 100, 319
Csp6I GTAC 4 cut(s) 45, 247, 427, 580
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CspI CGGWCCG 1 cut(s) 163
CviQI GTAC 4 cut(s) 45, 247, 427, 580
DinI GGCGCC 1 cut(s) 879
DraI TTTAAA 1 cut(s) 1273
DrdI GACNNNNNNGTC 1 cut(s) 1586
DriI GACNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 1586
EaeI YGGCCR 2 cut(s) 352, 364
EagI CGGCCG 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 1594, 2079
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 2 cut(s) 1594, 2079
EciI GGCGGA 3 cut(s) 251, 2291, 3192
Ecl136II GAGCTC 1 cut(s) 1699
EclXI CGGCCG 1 cut(s) 364
Eco130I CCWWGG 3 cut(s) 237, 1575, 1828
Eco147I AGGCCT 1 cut(s) 930
Eco24I GRGCYC 2 cut(s) 278, 1701
Eco31I GGTCTC 2 cut(s) 147, 1596
Eco47I GGWCC 2 cut(s) 163, 325
Eco52I CGGCCG 1 cut(s) 364
Eco53kI GAGCTC 1 cut(s) 1699
Eco57I CTGAAG 1 cut(s) 457
Eco72I CACGTG 1 cut(s) 3010
Eco81I CCTNAGG 1 cut(s) 987
Eco91I GGTNACC 1 cut(s) 2742
EcoICRI GAGCTC 1 cut(s) 1699
EcoNI CCTNNNNNAGG 1 cut(s) 935
EcoO109I RGGNCCY 2 cut(s) 241, 274
EcoO65I GGTNACC 1 cut(s) 2742
EcoRI GAATTC 1 cut(s) 1906
EcoRII CCWGG 3 cut(s) 270, 536, 2641
EcoT14I CCWWGG 3 cut(s) 237, 1575, 1828
EcoT22I ATGCAT 1 cut(s) 1969
EcoT38I GRGCYC 2 cut(s) 278, 1701
EgeI GGCGCC 1 cut(s) 879
EheI GGCGCC 1 cut(s) 879
ErhI CCWWGG 3 cut(s) 237, 1575, 1828
FalI AAGNNNNNCTT 4 cut(s) 455, 487, 1405, 1437
FaqI GGGAC 2 cut(s) 539, 2989
FauI CCCGC 1 cut(s) 227
FauNDI CATATG 2 cut(s) 601, 706
FbaI TGATCA 2 cut(s) 1303, 2460
FblI GTMKAC 1 cut(s) 1294
FokI GGATG 7 cut(s) 553, 1268, 1721, 1784, 2240, 2285, 2555
FriOI GRGCYC 2 cut(s) 278, 1701
FspBI CTAG 6 cut(s) 1392, 1929, 2117, 2397, 2771, 3176
GlaI GCGC 3 cut(s) 256, 392, 879
GsaI CCCAGC 2 cut(s) 1292, 2372
GsuI CTGGAG 2 cut(s) 2706, 3188
HaeII RGCGCY 2 cut(s) 258, 881
HapII CCGG 6 cut(s) 161, 166, 314, 712, 1814, 2540
HgaI GACGC 3 cut(s) 94, 100, 319
HhaI GCGC 3 cut(s) 257, 393, 880
Hin1I GRCGYC 2 cut(s) 311, 878
Hin6I GCGC 3 cut(s) 255, 391, 878
HinP1I GCGC 3 cut(s) 255, 391, 878
HindIII AAGCTT 4 cut(s) 1238, 1362, 2003, 2601
HpaII CCGG 6 cut(s) 161, 166, 314, 712, 1814, 2540
HphI GGTGA 3 cut(s) 1973, 2103, 2608
Hpy166II GTNNAC 8 cut(s) 580, 582, 668, 891, 1295, 1793, 2470, 2861
Hpy8I GTNNAC 8 cut(s) 580, 582, 668, 891, 1295, 1793, 2470, 2861
Hpy99I CGWCG 4 cut(s) 155, 212, 377, 380
HpyAV CCTTC 8 cut(s) 209, 406, 649, 1447, 1781, 2207, 2862, 3011
HpyCH4III ACNGT 6 cut(s) 442, 901, 1639, 1686, 2338, 2843
HpyCH4IV ACGT 4 cut(s) 372, 2295, 2476, 3009
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 273, 631, 737, 1973, 3211
HpySE526I ACGT 4 cut(s) 372, 2295, 2476, 3009
Hsp92I GRCGYC 2 cut(s) 311, 878
HspAI GCGC 3 cut(s) 255, 391, 878
KasI GGCGCC 1 cut(s) 877
Kpn2I TCCGGA 1 cut(s) 2539
Ksp22I TGATCA 2 cut(s) 1303, 2460
LmnI GCTCC 7 cut(s) 15, 316, 831, 1282, 1624, 2326, 2372
Lsp1109I GCAGC 7 cut(s) 93, 1297, 1997, 2954, 2970, 2975, 3092
LweI GCATC 8 cut(s) 639, 1246, 1504, 1954, 2140, 2218, 2950, 3030
MaeI CTAG 6 cut(s) 1392, 1929, 2117, 2397, 2771, 3176
MaeII ACGT 4 cut(s) 372, 2295, 2476, 3009
MfeI CAATTG 1 cut(s) 1994
MflI RGATCY 4 cut(s) 1073, 1459, 3098, 3185
MhlI GDGCHC 2 cut(s) 278, 1701
Mly113I GGCGCC 1 cut(s) 878
MlyI GAGTC 6 cut(s) 14, 1500, 1548, 2257, 2744, 3056
MmeI TCCRAC 5 cut(s) 231, 955, 1651, 2469, 3163
Mph1103I ATGCAT 1 cut(s) 1969
MroI TCCGGA 1 cut(s) 2539
MroXI GAANNNNTTC 1 cut(s) 2714
MslI CAYNNNNRTG 3 cut(s) 1770, 2249, 2621
MspA1I CMGCKG 3 cut(s) 752, 1288, 3083
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 6 cut(s) 161, 166, 314, 712, 1814, 2540
MspR9I CCNGG 5 cut(s) 161, 272, 538, 712, 2643
MunI CAATTG 1 cut(s) 1994
Mva1269I GAATGC 2 cut(s) 2260, 3136
MvaI CCWGG 3 cut(s) 272, 538, 2643
MvnI CGCG 4 cut(s) 105, 111, 393, 723
MwoI GCNNNNNNNGC 6 cut(s) 261, 273, 631, 737, 1973, 3211
NarI GGCGCC 1 cut(s) 878
NciI CCSGG 2 cut(s) 161, 712
NdeI CATATG 2 cut(s) 601, 706
NlaIV GGNNCC 6 cut(s) 276, 691, 719, 879, 2818, 3187
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 3 cut(s) 124, 399, 1798
NsiI ATGCAT 1 cut(s) 1969
NspI RCATGY 1 cut(s) 2416
PaeI GCATGC 1 cut(s) 2416
PceI AGGCCT 1 cut(s) 930
PcsI WCGNNNNNNNCGW 2 cut(s) 369, 837
PctI GAATGC 2 cut(s) 2260, 3136
PdmI GAANNNNTTC 1 cut(s) 2714
PfeI GAWTC 4 cut(s) 100, 769, 1731, 2108
PflFI GACNNNGTC 1 cut(s) 2843
PfoI TCCNGGA 1 cut(s) 536
PleI GAGTC 6 cut(s) 13, 1500, 1548, 2257, 2744, 3055
PluTI GGCGCC 1 cut(s) 881
PmaCI CACGTG 1 cut(s) 3010
PmlI CACGTG 1 cut(s) 3010
PpsI GAGTC 6 cut(s) 13, 1500, 1548, 2257, 2744, 3055
Ppu21I YACGTR 1 cut(s) 3010
PshBI ATTAAT 2 cut(s) 2046, 2823
Psp124BI GAGCTC 1 cut(s) 1701
Psp6I CCWGG 3 cut(s) 270, 536, 2641
PspCI CACGTG 1 cut(s) 3010
PspEI GGTNACC 1 cut(s) 2742
PspFI CCCAGC 2 cut(s) 1288, 2368
PspGI CCWGG 3 cut(s) 270, 536, 2641
PspN4I GGNNCC 6 cut(s) 276, 691, 719, 879, 2818, 3187
PspOMI GGGCCC 1 cut(s) 274
PspPI GGNCC 7 cut(s) 163, 168, 241, 274, 275, 325, 718
PstI CTGCAG 1 cut(s) 2015
PsuI RGATCY 4 cut(s) 1073, 1459, 3098, 3185
PsyI GACNNNGTC 1 cut(s) 2843
PvuII CAGCTG 3 cut(s) 752, 1288, 3083
RsaI GTAC 4 cut(s) 46, 248, 428, 581
RsaNI GTAC 4 cut(s) 45, 247, 427, 580
RseI CAYNNNNRTG 3 cut(s) 1770, 2249, 2621
Rsr2I CGGWCCG 1 cut(s) 163
RsrII CGGWCCG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 1701
Sau96I GGNCC 7 cut(s) 163, 168, 241, 274, 275, 325, 718
SchI GAGTC 6 cut(s) 14, 1500, 1548, 2257, 2744, 3056
ScrFI CCNGG 5 cut(s) 161, 272, 538, 712, 2643
SduI GDGCHC 2 cut(s) 278, 1701
SfaNI GCATC 8 cut(s) 639, 1246, 1504, 1954, 2140, 2218, 2950, 3030
SfcI CTRYAG 5 cut(s) 585, 900, 1821, 2011, 3102
SfoI GGCGCC 1 cut(s) 879
SinI GGWCC 2 cut(s) 163, 325
SmiMI CAYNNNNRTG 3 cut(s) 1770, 2249, 2621
SmlI CTYRAG 7 cut(s) 76, 85, 494, 1411, 1705, 1901, 2000
SmoI CTYRAG 7 cut(s) 76, 85, 494, 1411, 1705, 1901, 2000
SphI GCATGC 1 cut(s) 2416
SseBI AGGCCT 1 cut(s) 930
SspDI GGCGCC 1 cut(s) 877
SspI AATATT 3 cut(s) 1948, 2801, 3210
SspMI CTAG 6 cut(s) 1392, 1929, 2117, 2397, 2771, 3176
SstI GAGCTC 1 cut(s) 1701
StuI AGGCCT 1 cut(s) 930
StyD4I CCNGG 5 cut(s) 159, 270, 536, 710, 2641
StyI CCWWGG 3 cut(s) 237, 1575, 1828
TaaI ACNGT 6 cut(s) 442, 901, 1639, 1686, 2338, 2843
TaiI ACGT 4 cut(s) 375, 2298, 2479, 3012
TaqI TCGA 2 cut(s) 1557, 2776
TaqII GACCGA 1 cut(s) 1620
TatI WGTACW 1 cut(s) 579
TauI GCSGC 6 cut(s) 225, 267, 369, 383, 723, 1196
TfiI GAWTC 4 cut(s) 100, 769, 1731, 2108
TscAI CASTG 6 cut(s) 63, 129, 792, 1445, 2148, 2470
TseFI GTSAC 3 cut(s) 124, 399, 1798
TseI GCWGC 7 cut(s) 81, 1285, 2010, 2942, 2963, 2983, 3080
Tsp45I GTSAC 3 cut(s) 124, 399, 1798
TspGWI ACGGA 3 cut(s) 168, 2487, 3018
TspRI CASTG 6 cut(s) 63, 129, 792, 1445, 2148, 2470
Tth111I GACNNNGTC 1 cut(s) 2843
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 163, 325
VspI ATTAAT 2 cut(s) 2046, 2823
XagI CCTNNNNNAGG 1 cut(s) 935
XapI RAATTY 6 cut(s) 1613, 1906, 1980, 2560, 2791, 3156
XbaI TCTAGA 1 cut(s) 1391
XceI RCATGY 1 cut(s) 2416
XcmI CCANNNNNNNNNTGG 1 cut(s) 3148
XmiI GTMKAC 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 2714
XspI CTAG 6 cut(s) 1392, 1929, 2117, 2397, 2771, 3176
Zsp2I ATGCAT 1 cut(s) 1969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.