Rh1CG441500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009191
Physical Location & Seq
Forward (+)
69494813 .. 69498981
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG441500.1

Sequence Viewer

Length: 3228 bp
ATGGAGTCGCTCCATTTCAGCTCAAACTACTCCTCTTTTCTCTGTACCACTATTCCACTGACCACTTGTTCTCCCTTGAGCAGCTTAAGAAAACCCAAGATTCGCGTCCGCATCCGAATCCGATCCTCAGTGACCCCAGACCCGTGGTCTCTCAGCGACGGAAACCCGGACCGGCCCAAGCCCAAGTCCAAGCACCCAAAGAACCCTCTCTCCGACGACAACGCCCGCCGCATAATCAAGTCCAAGGCCCTGTACCTGAGCGCCCTCCGCCGCAACCAGGGCCCACACGCCCAGACCCCTAAGTGGATCAAGAGGACGCCGGAGCAGATGGTCCGCTATTTGCAGGACGACAGAAACGGCCACCTCTACGGTCGCCACGTCGTCGCCGCCATCAAGCGCGTCAGGTCACTCTCCGAGAAGGCCGAAGGCGAGTACGACATGAGAACCGTCATGTCGTCTTTTGTGGGGAAGCTCAGCTTCAGAGAAATGTGCGTGGTGCTTAAGGAACAAAAGGGGTGGAGGCAAGTCAGGGACTTGTTTTCCTGGATGAAATTGCAGTTAAGCTACCGCCCAAGTGTGATTGTGTACACTATAGTTCTAAGGACATATGGGCAAATTGGGAAGATCAAGCTGGCTGAGCAGACCTTCTTGGAGATGCTTGAAGCTGGTTGTGAACCTGATGAAGTTGCCTGTGGAACCATGCTGTGCACATATGCCCGATGGGGCCGCGAAAAGGCTATGCTGGCATTTTATTCAGCTGTGCAGGAGAGAGGGATCGTACTTTCTGTTGCGGTTTATAATTTCATGTTGTCCTCATTGCAGAAGAAATCGCTCCACGAAAAAGTCGTGCAGGTTTGGAGACAGATGGTGAGGGAGGGAGTTGTGCCGAATAAGTTTACTTATACTGTAGTGATTAGCTCGCTTGTCAAACAAGGCCTCATTGAGGAGGCTTTCAAGTGTTTTGATGAGTGTAAGAGTGTTGGATTTGTTCCTGAGGAGGCGACTTATAGTTTGCTCATCAGTTTAAGCACCAAAAGTGGCGACTATGACCAAGCACTAAGATTGTATGAGGACATGAGATCTATGAAAATTGTTCCGAGCAACTACACCTGTGCTTCATTGCTCACTTTGTATTACAAAAAGGAGGATTATTCTAAAGCCCTTTCTCTCTTTTCAGAAATGGAGAGAGAGAAAATTGCGGCTGATGAAGTCATATATGGGTTGCTGATCAGAATATATGGAAAGCTTGGTCTTTATGAGGACGCTCGGACAACATTTAAAGAGATGGAGCAGCTGGGTCTACTTAGTGATCAGAAAACATATTTAGCAATGGCCCAAGTCAATCTCAATTCAGGGGATTATGACAAAGCTTTGGAGGTCATTGAACTAATGAAGTCTAGAAACAACATTTGGCTCTCAAGGTTTGCTTATATTGTCTTGTTGCAGTGTTATGTTATGAAGGAAGATCTTAGTTCTGCCGAAGTTACATTTCAGGCTCTATCCAAGACTGGACTCCCAGATGCAGGTTCTTGTAATGATATGCTCAATTTGTATATAAGACTCGACTTAATGGAAAAGGCCAAGGACTTTATTGTCCAGATAAGAAGAGACCGAGTAGAATTTGACGAGGAGCTTTGCAGAACAGTTATGAGTATATATTGCAAGGAGGGAATGGTTGGAGATACTGAACAGTTAATAAAAGAGCTCAGCTCAAGTCCATTATTCAAAGATAGTAGATTCATCCAAACAATTTGTAGGGCTATGTATGAACACAAGGATGATGAACAACTTGAAGGTAAACTTGTGACCTTTTTCCAGCCGGATACTACAGCCCTTGGATTGGTGCTTAGTCTCTATCTTGTAAATGGCAATATGAGTAAGACAGACAAAGTTGTGGCGTTGTTGCTTGAGAATTCTGGTGGCTTATCAACTGCTAGTCAGCTCATCAGGAATATTATCAGAGATGGTGATGCATATAAAGCAGAAATTCATATCAATCAATTGCTCAAGCTTGGCTGCAGAGTGGATAATGCAACAATTTCTGCTTTGATTAATTTATATGGAAAGAAACACAAGCTGAAAAAGGCCGAAGAGATATATACAGCATTTGCAGATTCACCTCTAGCTAAAAAGTTACTATGTAACTCACTGCTTGATGCTTATGCCAAATGTGGTAAATCAGAGGAAGCATACTCACTTTACAGACGGCTTACACAAGAAGGGCATGATCTGGATGCTGTTGCCATCAGCATAGTTGTGAATGCTTTGACTCATAGTGGAAAACATAGAGAATCAGAGAACGTCATCCGCCAAAGTCTTGAACACCGATTGGAGCTTGATACTGTGGCATACAATACTTTCATTAAGGCTATGCTGGGAGCAGGTAGGTTACATTTTGCTTCTAGTATCTATGAGTGCATGCTTTCTGAGGGGGTTACTCCATCAATTCAGACATATAACACCATGATCAGTGTTTACGGATGTGGTAGAAAGTTGGATAGGGCTGTGGAAATGTTTAATACAGCTTGTAGCTTGGGTTTGTCTCCGGATGAAAAGGCATACATGAATTTGATTAGCTACTATGGAAAAGCTGGAAAAAGGCATGAAGCTTCCATGCTATTCACCAAAATGCGTGAAAGCATAAAACCTGGAATGGTAAGTTACAATATAATGATGAATGTATATGCTACTGGAGGACTTTATCAAGAAGCTGAGAAATTATTCAAAGCCATGAAGCAAGATGGTTGGTTACCTGACTCATTCACTTACCTCTCCCTAGTTCGAGCTTACACAGAGAATTTGAAATATTCAGAAGCAGAGGAAACCATTAATTCGATGCAAGAAGACGGTGTCTATCCTTCATGTTCACATTTTAACCTCATTCTCTCTGCTTTTGCCAAAATGGGATTGATTGGGGAAGCAGAAAGAGTTTATGAGGAACTACTTGCAGCAGGTTTAAGCCCAGATGCAGCTTGTTATGGGACTATGCTGCGAGGTTACATGGACTACGGACACGTGGAAGAAGGCATCAAGTTCTATGAACAAATAAGTGAGTCTATAAAGGAAGACAGGTTTATTTTGAGTGCAGCTGTGCATTTTTACAGATCTGTAGGAAACGAAGTAGAAGCTCAGAGTGTTTTGCATTCCATGAGTAGCATGGGAATTTCATTTCTGGAGAACCTAGAAGTTGGATCCAAGCTAAAATCTCCGCCAATGTTGCAGAATTGA

Protein Analysis

1075

Amino Acids

121.87

Weight (kDa)

8.11

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 191 - 239 1e-07 PPR repeat family
PPR_long PF17177 246 - 375 6.4e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 262 - 310 3.6e-10 PPR repeat family
PPR_long PF17177 277 - 417 2.1e-12 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 293 - 323 9.9e-06 PPR repeat
PPR_2 PF13041 303 - 341 4.8e-06 PPR repeat family
PPR_long PF17177 380 - 493 1.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 714 - 756 5.4e-06 PPR repeat family
PPR_3 PF13812 777 - 827 2.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 780 - 825 1.3e-09 PPR repeat family
PPR_3 PF13812 845 - 895 8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 883 - 930 2.5e-11 PPR repeat family
PPR PF01535 886 - 915 7.5e-07 PPR repeat
PPR_long PF17177 902 - 1020 3.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 906 - 967 1.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 957 - 1000 1.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AasI GACNNNNNNGTC 1 cut(s) 1592
Acc36I ACCTGC 4 cut(s) 841, 1514, 2372, 2942
AccI GTMKAC 1 cut(s) 1300
AccII CGCG 3 cut(s) 105, 399, 729
AccIII TCCGGA 1 cut(s) 2545
AclWI GGATC 5 cut(s) 117, 314, 782, 3186, 3199
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 6 cut(s) 1619, 1912, 1986, 2566, 2797, 3162
AcuI CTGAAG 1 cut(s) 463
AcvI CACGTG 1 cut(s) 3016
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 5 cut(s) 46, 254, 434, 587, 780
AfiI CCNNNNNNNGG 6 cut(s) 277, 303, 733, 943, 1523, 1840
AflII CTTAAG 2 cut(s) 85, 500
AflIII ACRYGT 1 cut(s) 3013
AgsI TTSAA 8 cut(s) 662, 955, 1385, 1726, 1793, 2321, 2725, 2803
AhdI GACNNNNNGTC 1 cut(s) 145
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 3 cut(s) 276, 542, 2647
AjuI GAANNNNNNNTTGG 2 cut(s) 1393, 1425
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
Alw21I GWGCWC 2 cut(s) 710, 1707
Alw26I GTCTC 5 cut(s) 153, 853, 1602, 1856, 2547
Alw44I GTGCAC 1 cut(s) 706
AlwI GGATC 5 cut(s) 117, 314, 782, 3186, 3199
Aor13HI TCCGGA 1 cut(s) 2545
ApaI GGGCCC 1 cut(s) 284
ApaLI GTGCAC 1 cut(s) 706
ApeKI GCWGC 7 cut(s) 81, 1291, 2016, 2948, 2969, 2989, 3086
ApoI RAATTY 6 cut(s) 1619, 1912, 1986, 2566, 2797, 3162
ArsI GACNNNNNNTTYG 2 cut(s) 994, 1026
AseI ATTAAT 2 cut(s) 2052, 2829
Asp700I GAANNNNTTC 1 cut(s) 2720
AspLEI GCGC 2 cut(s) 263, 399
AspS9I GGNCC 8 cut(s) 169, 174, 247, 280, 281, 331, 724, 1333
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 880, 1979, 2109, 2614
AvaII GGWCC 2 cut(s) 169, 331
AxyI CCTNAGG 1 cut(s) 993
BaeGI GKGCMC 2 cut(s) 284, 710
BamHI GGATCC 1 cut(s) 3191
BanII GRGCYC 2 cut(s) 284, 1707
BbrPI CACGTG 1 cut(s) 3016
BbsI GAAGAC 2 cut(s) 2850, 3072
Bbv12I GWGCWC 2 cut(s) 710, 1707
BbvI GCAGC 7 cut(s) 93, 1303, 2003, 2960, 2976, 2981, 3098
BccI CCATC 9 cut(s) 322, 398, 714, 859, 1279, 1958, 2252, 2449, 2735
BceAI ACGGC 2 cut(s) 373, 2222
BciT130I CCWGG 3 cut(s) 278, 544, 2649
BciVI GTATCC 1 cut(s) 1816
BclI TGATCA 3 cut(s) 1227, 1309, 2466
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 5 cut(s) 153, 853, 1602, 1856, 2547
BfaI CTAG 6 cut(s) 1398, 1935, 2123, 2403, 2777, 3182
BfmI CTRYAG 5 cut(s) 591, 906, 1827, 2017, 3108
BfoI RGCGCY 1 cut(s) 264
BfrI CTTAAG 2 cut(s) 85, 500
BfuAI ACCTGC 4 cut(s) 841, 1514, 2372, 2942
BfuI GTATCC 1 cut(s) 1816
BglII AGATCT 3 cut(s) 1079, 1465, 3104
BlpI GCTNAGC 3 cut(s) 473, 636, 1706
Bme1390I CCNGG 4 cut(s) 167, 278, 544, 2649
Bme18I GGWCC 2 cut(s) 169, 331
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 8 cut(s) 169, 174, 247, 280, 281, 331, 724, 1333
BmiI GGNNCC 4 cut(s) 282, 697, 725, 3193
BmrFI CCNGG 4 cut(s) 167, 278, 544, 2649
BmsI GCATC 9 cut(s) 120, 645, 1510, 1960, 2146, 2224, 2826, 2956, 3036
BpiI GAAGAC 2 cut(s) 2850, 3072
BplI GAGNNNNNCTC 2 cut(s) 1694, 1726
BpmI CTGGAG 2 cut(s) 2712, 3194
Bpu10I CCTNAGC 1 cut(s) 257
Bpu1102I GCTNAGC 3 cut(s) 473, 636, 1706
BpuEI CTTGAG 5 cut(s) 97, 1402, 1696, 1928, 1991
BpuMI CCSGG 1 cut(s) 167
BsaAI YACGTR 1 cut(s) 3016
BsaHI GRCGYC 1 cut(s) 317
BsaI GGTCTC 2 cut(s) 153, 1602
BsaJI CCNNGG 5 cut(s) 143, 243, 277, 1581, 1834
BsaWI WCCGGW 1 cut(s) 2545
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 194, 224
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 303, 733, 943, 1523, 1840
Bse118I RCCGGY 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 1513, 2695
Bse21I CCTNAGG 1 cut(s) 993
Bse3DI GCAATG 3 cut(s) 815, 1118, 1335
BseAI TCCGGA 1 cut(s) 2545
BseBI CCWGG 3 cut(s) 278, 544, 2649
BseDI CCNNGG 5 cut(s) 143, 243, 277, 1581, 1834
BseGI GGATG 8 cut(s) 111, 552, 1740, 1783, 2239, 2304, 2486, 2554
BseLI CCNNNNNNNGG 6 cut(s) 277, 303, 733, 943, 1523, 1840
BseMI GCAATG 3 cut(s) 815, 1118, 1335
BseNI ACTGG 2 cut(s) 1513, 2695
BseRI GAGGAG 4 cut(s) 22, 959, 1010, 1643
BseSI GKGCMC 2 cut(s) 284, 710
BseXI GCAGC 7 cut(s) 93, 1303, 2003, 2960, 2976, 2981, 3098
BseYI CCCAGC 2 cut(s) 1294, 2374
BsgI GTGCAG 3 cut(s) 782, 869, 3105
Bsh1236I CGCG 3 cut(s) 105, 399, 729
Bsh1285I CGRYCG 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 710, 1707
BsiSI CCGG 5 cut(s) 167, 172, 320, 1820, 2546
BslFI GGGAC 2 cut(s) 545, 2995
BslI CCNNNNNNNGG 6 cut(s) 277, 303, 733, 943, 1523, 1840
BsmAI GTCTC 5 cut(s) 153, 853, 1602, 1856, 2547
BsmFI GGGAC 2 cut(s) 545, 2995
BsmI GAATGC 2 cut(s) 2266, 3142
Bso31I GGTCTC 2 cut(s) 153, 1602
Bsp120I GGGCCC 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 284, 710, 1707
Bsp13I TCCGGA 1 cut(s) 2545
Bsp1407I TGTACA 1 cut(s) 585
Bsp1720I GCTNAGC 3 cut(s) 473, 636, 1706
BspEI TCCGGA 1 cut(s) 2545
BspFNI CGCG 3 cut(s) 105, 399, 729
BspLI GGNNCC 4 cut(s) 282, 697, 725, 3193
BspMAI CTGCAG 1 cut(s) 2021
BspMI ACCTGC 4 cut(s) 841, 1514, 2372, 2942
BspPI GGATC 5 cut(s) 117, 314, 782, 3186, 3199
BspTI CTTAAG 2 cut(s) 85, 500
BspTNI GGTCTC 2 cut(s) 153, 1602
BsrDI GCAATG 3 cut(s) 815, 1118, 1335
BsrFI RCCGGY 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 2 cut(s) 1513, 2695
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 5 cut(s) 143, 243, 277, 1581, 1834
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 3 cut(s) 243, 1581, 1834
Bst2UI CCWGG 3 cut(s) 278, 544, 2649
Bst4CI ACNGT 7 cut(s) 371, 448, 907, 1645, 1692, 2344, 2849
Bst6I CTCTTC 2 cut(s) 1600, 2085
BstACI GRCGYC 1 cut(s) 317
BstAFI CTTAAG 2 cut(s) 85, 500
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 3016
BstC8I GCNNGC 5 cut(s) 226, 633, 744, 920, 2420
BstDSI CCRYGG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 2748
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 8 cut(s) 111, 552, 1740, 1783, 2239, 2304, 2486, 2554
BstFNI CGCG 3 cut(s) 105, 399, 729
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 2 cut(s) 263, 399
BstMAI GTCTC 5 cut(s) 153, 853, 1602, 1856, 2547
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 6 cut(s) 267, 279, 637, 743, 1979, 3217
BstNI CCWGG 3 cut(s) 278, 544, 2649
BstNSI RCATGY 1 cut(s) 2422
BstPI GGTNACC 1 cut(s) 2748
BstSCI CCNGG 4 cut(s) 165, 276, 542, 2647
BstSFI CTRYAG 5 cut(s) 591, 906, 1827, 2017, 3108
BstSLI GKGCMC 2 cut(s) 284, 710
BstUI CGCG 3 cut(s) 105, 399, 729
BstV1I GCAGC 7 cut(s) 93, 1303, 2003, 2960, 2976, 2981, 3098
BstV2I GAAGAC 2 cut(s) 2850, 3072
BstX2I RGATCY 4 cut(s) 1079, 1465, 3104, 3191
BstXI CCANNNNNNTGG 1 cut(s) 144
BstYI RGATCY 4 cut(s) 1079, 1465, 3104, 3191
Bsu36I CCTNAGG 1 cut(s) 993
BsuI GTATCC 1 cut(s) 1816
BtgI CCRYGG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 8 cut(s) 111, 552, 1740, 1783, 2239, 2304, 2486, 2554
BtsI GCAGTG 2 cut(s) 1451, 2147
BtsIMutI CAGTG 5 cut(s) 56, 135, 1451, 2147, 2476
BveI ACCTGC 4 cut(s) 841, 1514, 2372, 2942
Cac8I GCNNGC 5 cut(s) 226, 633, 744, 920, 2420
CfoI GCGC 2 cut(s) 263, 399
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 8 cut(s) 169, 174, 247, 280, 281, 331, 724, 1333
CpoI CGGWCCG 1 cut(s) 169
CseI GACGC 4 cut(s) 94, 325, 388, 1271
Csp6I GTAC 5 cut(s) 45, 253, 433, 586, 779
CspCI CAANNNNNGTGG 2 cut(s) 497, 532
CspI CGGWCCG 1 cut(s) 169
CviQI GTAC 5 cut(s) 45, 253, 433, 586, 779
DraI TTTAAA 1 cut(s) 1279
DrdI GACNNNNNNGTC 1 cut(s) 1592
DriI GACNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 1592
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 1600, 2085
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 1600, 2085
EciI GGCGGA 3 cut(s) 257, 2297, 3198
Ecl136II GAGCTC 1 cut(s) 1705
Eco130I CCWWGG 3 cut(s) 243, 1581, 1834
Eco147I AGGCCT 1 cut(s) 936
Eco24I GRGCYC 2 cut(s) 284, 1707
Eco31I GGTCTC 2 cut(s) 153, 1602
Eco47I GGWCC 2 cut(s) 169, 331
Eco53kI GAGCTC 1 cut(s) 1705
Eco57I CTGAAG 1 cut(s) 463
Eco72I CACGTG 1 cut(s) 3016
Eco81I CCTNAGG 1 cut(s) 993
Eco91I GGTNACC 1 cut(s) 2748
EcoICRI GAGCTC 1 cut(s) 1705
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoO109I RGGNCCY 2 cut(s) 247, 280
EcoO65I GGTNACC 1 cut(s) 2748
EcoRI GAATTC 1 cut(s) 1912
EcoRII CCWGG 3 cut(s) 276, 542, 2647
EcoT14I CCWWGG 3 cut(s) 243, 1581, 1834
EcoT22I ATGCAT 1 cut(s) 1975
EcoT38I GRGCYC 2 cut(s) 284, 1707
ErhI CCWWGG 3 cut(s) 243, 1581, 1834
FalI AAGNNNNNCTT 6 cut(s) 461, 493, 1411, 1443, 1785, 1817
FaqI GGGAC 2 cut(s) 545, 2995
FauI CCCGC 1 cut(s) 233
FauNDI CATATG 2 cut(s) 607, 712
FbaI TGATCA 3 cut(s) 1227, 1309, 2466
FblI GTMKAC 1 cut(s) 1300
FokI GGATG 8 cut(s) 98, 559, 1727, 1790, 2246, 2291, 2493, 2561
FriOI GRGCYC 2 cut(s) 284, 1707
FspBI CTAG 6 cut(s) 1398, 1935, 2123, 2403, 2777, 3182
GlaI GCGC 2 cut(s) 262, 398
GsaI CCCAGC 2 cut(s) 1298, 2378
GsuI CTGGAG 2 cut(s) 2712, 3194
HaeII RGCGCY 1 cut(s) 264
HapII CCGG 5 cut(s) 167, 172, 320, 1820, 2546
HgaI GACGC 4 cut(s) 94, 325, 388, 1271
HhaI GCGC 2 cut(s) 263, 399
Hin1I GRCGYC 1 cut(s) 317
Hin6I GCGC 2 cut(s) 261, 397
HinP1I GCGC 2 cut(s) 261, 397
HindIII AAGCTT 4 cut(s) 1244, 1368, 2009, 2607
HpaII CCGG 5 cut(s) 167, 172, 320, 1820, 2546
HphI GGTGA 4 cut(s) 880, 1979, 2109, 2614
Hpy166II GTNNAC 9 cut(s) 586, 588, 674, 708, 897, 1301, 1799, 2476, 2867
Hpy8I GTNNAC 9 cut(s) 586, 588, 674, 708, 897, 1301, 1799, 2476, 2867
Hpy99I CGWCG 4 cut(s) 161, 218, 383, 386
HpyAV CCTTC 8 cut(s) 412, 419, 655, 1453, 1787, 2213, 2868, 3017
HpyCH4III ACNGT 7 cut(s) 371, 448, 907, 1645, 1692, 2344, 2849
HpyCH4IV ACGT 3 cut(s) 378, 2301, 3015
HpyF10VI GCNNNNNNNGC 6 cut(s) 267, 279, 637, 743, 1979, 3217
HpySE526I ACGT 3 cut(s) 378, 2301, 3015
Hsp92I GRCGYC 1 cut(s) 317
HspAI GCGC 2 cut(s) 261, 397
Kpn2I TCCGGA 1 cut(s) 2545
Ksp22I TGATCA 3 cut(s) 1227, 1309, 2466
LmnI GCTCC 7 cut(s) 15, 322, 837, 1288, 1630, 2332, 2378
Lsp1109I GCAGC 7 cut(s) 93, 1303, 2003, 2960, 2976, 2981, 3098
LweI GCATC 9 cut(s) 120, 645, 1510, 1960, 2146, 2224, 2826, 2956, 3036
MaeI CTAG 6 cut(s) 1398, 1935, 2123, 2403, 2777, 3182
MaeII ACGT 3 cut(s) 378, 2301, 3015
MboII GAAGA 8 cut(s) 634, 835, 1475, 1617, 2102, 2855, 3032, 3077
MfeI CAATTG 1 cut(s) 2000
MflI RGATCY 4 cut(s) 1079, 1465, 3104, 3191
MhlI GDGCHC 3 cut(s) 284, 710, 1707
MlyI GAGTC 6 cut(s) 14, 1506, 1554, 2263, 2750, 3062
MmeI TCCRAC 5 cut(s) 237, 961, 1657, 2475, 3169
Mph1103I ATGCAT 1 cut(s) 1975
MroI TCCGGA 1 cut(s) 2545
MroXI GAANNNNTTC 1 cut(s) 2720
MslI CAYNNNNRTG 3 cut(s) 1776, 2255, 2627
MspA1I CMGCKG 3 cut(s) 758, 1294, 3089
MspCI CTTAAG 2 cut(s) 85, 500
MspI CCGG 5 cut(s) 167, 172, 320, 1820, 2546
MspR9I CCNGG 4 cut(s) 167, 278, 544, 2649
MunI CAATTG 1 cut(s) 2000
Mva1269I GAATGC 2 cut(s) 2266, 3142
MvaI CCWGG 3 cut(s) 278, 544, 2649
MvnI CGCG 3 cut(s) 105, 399, 729
MwoI GCNNNNNNNGC 6 cut(s) 267, 279, 637, 743, 1979, 3217
NciI CCSGG 1 cut(s) 167
NdeI CATATG 2 cut(s) 607, 712
NlaIV GGNNCC 4 cut(s) 282, 697, 725, 3193
NmuCI GTSAC 3 cut(s) 130, 405, 1804
NsiI ATGCAT 1 cut(s) 1975
NspI RCATGY 1 cut(s) 2422
PaeI GCATGC 1 cut(s) 2422
PceI AGGCCT 1 cut(s) 936
PcsI WCGNNNNNNNCGW 2 cut(s) 375, 843
PctI GAATGC 2 cut(s) 2266, 3142
PdmI GAANNNNTTC 1 cut(s) 2720
PfeI GAWTC 5 cut(s) 100, 117, 1737, 2114, 2291
PflFI GACNNNGTC 1 cut(s) 2849
PfoI TCCNGGA 1 cut(s) 542
PleI GAGTC 6 cut(s) 13, 1506, 1554, 2263, 2750, 3061
PmaCI CACGTG 1 cut(s) 3016
PmlI CACGTG 1 cut(s) 3016
PpsI GAGTC 6 cut(s) 13, 1506, 1554, 2263, 2750, 3061
Ppu21I YACGTR 1 cut(s) 3016
PshBI ATTAAT 2 cut(s) 2052, 2829
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 1707
Psp6I CCWGG 3 cut(s) 276, 542, 2647
PspCI CACGTG 1 cut(s) 3016
PspEI GGTNACC 1 cut(s) 2748
PspFI CCCAGC 2 cut(s) 1294, 2374
PspGI CCWGG 3 cut(s) 276, 542, 2647
PspN4I GGNNCC 4 cut(s) 282, 697, 725, 3193
PspOMI GGGCCC 1 cut(s) 280
PspPI GGNCC 8 cut(s) 169, 174, 247, 280, 281, 331, 724, 1333
PstI CTGCAG 1 cut(s) 2021
PsuI RGATCY 4 cut(s) 1079, 1465, 3104, 3191
PsyI GACNNNGTC 1 cut(s) 2849
PvuII CAGCTG 3 cut(s) 758, 1294, 3089
RsaI GTAC 5 cut(s) 46, 254, 434, 587, 780
RsaNI GTAC 5 cut(s) 45, 253, 433, 586, 779
RseI CAYNNNNRTG 3 cut(s) 1776, 2255, 2627
Rsr2I CGGWCCG 1 cut(s) 169
RsrII CGGWCCG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 1707
Sau96I GGNCC 8 cut(s) 169, 174, 247, 280, 281, 331, 724, 1333
SchI GAGTC 6 cut(s) 14, 1506, 1554, 2263, 2750, 3062
ScrFI CCNGG 4 cut(s) 167, 278, 544, 2649
SduI GDGCHC 3 cut(s) 284, 710, 1707
SfaNI GCATC 9 cut(s) 120, 645, 1510, 1960, 2146, 2224, 2826, 2956, 3036
SfcI CTRYAG 5 cut(s) 591, 906, 1827, 2017, 3108
SinI GGWCC 2 cut(s) 169, 331
SmiMI CAYNNNNRTG 3 cut(s) 1776, 2255, 2627
SmlI CTYRAG 7 cut(s) 76, 85, 500, 1417, 1711, 1907, 2006
SmoI CTYRAG 7 cut(s) 76, 85, 500, 1417, 1711, 1907, 2006
SphI GCATGC 1 cut(s) 2422
SseBI AGGCCT 1 cut(s) 936
SspI AATATT 2 cut(s) 1954, 2807
SspMI CTAG 6 cut(s) 1398, 1935, 2123, 2403, 2777, 3182
SstI GAGCTC 1 cut(s) 1707
StuI AGGCCT 1 cut(s) 936
StyD4I CCNGG 4 cut(s) 165, 276, 542, 2647
StyI CCWWGG 3 cut(s) 243, 1581, 1834
TaaI ACNGT 7 cut(s) 371, 448, 907, 1645, 1692, 2344, 2849
TaiI ACGT 3 cut(s) 381, 2304, 3018
TaqI TCGA 3 cut(s) 1563, 2782, 2834
TaqII GACCGA 1 cut(s) 1626
TatI WGTACW 1 cut(s) 585
TauI GCSGC 5 cut(s) 231, 273, 389, 729, 1202
TfiI GAWTC 5 cut(s) 100, 117, 1737, 2114, 2291
TscAI CASTG 5 cut(s) 63, 135, 1451, 2154, 2476
TseFI GTSAC 3 cut(s) 130, 405, 1804
TseI GCWGC 7 cut(s) 81, 1291, 2016, 2948, 2969, 2989, 3086
Tsp45I GTSAC 3 cut(s) 130, 405, 1804
TspGWI ACGGA 3 cut(s) 174, 2493, 3024
TspRI CASTG 5 cut(s) 63, 135, 1451, 2154, 2476
Tth111I GACNNNGTC 1 cut(s) 2849
Vha464I CTTAAG 2 cut(s) 85, 500
VneI GTGCAC 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 169, 331
VspI ATTAAT 2 cut(s) 2052, 2829
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 6 cut(s) 1619, 1912, 1986, 2566, 2797, 3162
XbaI TCTAGA 1 cut(s) 1397
XceI RCATGY 1 cut(s) 2422
XcmI CCANNNNNNNNNTGG 1 cut(s) 3154
XmiI GTMKAC 1 cut(s) 1300
XmnI GAANNNNTTC 1 cut(s) 2720
XspI CTAG 6 cut(s) 1398, 1935, 2123, 2403, 2777, 3182
Zsp2I ATGCAT 1 cut(s) 1975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.