Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009191

Physical Location & Seq

Genomic Coordinates Forward (+)

54168637 .. 54173245

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0445600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGGCTTCCAACAACCCCGACCTCACCAAAACCCCTAAACGCCGCTCCAACACATCGCGAAAGGTCCGACTCGTGGCGAAGATCGGCGGCGTTGCAGATCCGGCGGCCGAGGTTTCCGGTGGGGTGTCGTGGATCTCGGTGAACAAGCCCGCCGGAGAGGCGTCGGACAGTGTCACTCTCTCTTTCAGAGACCAATCAGCGAGCCGTAAAGAGTCTTATGAATTGGACAATTGCTATGACCAAAATGAGGATAATGGCCTAATTTTTTCAAGAGAAGTAAAGCCTTTAATTCCTGGAGTTCTGGAGGGCTGTAATGCCACTGTCATTGCTTTGGGAGCTAGAGGTAGTGGAAAGACTAGCTTAATTCAGGGTTCGAGTGAGAAACCAGGTTTGGCAACAATGGCAACCGATGAAATTATTTCAATGGCTGAGAAAAACGGATGTTCAATTACTATATCCTCATATGAGGTTTATCAGGACCACATTTATGATATATTGGATCTATCACGCCCAGAAGTTTTGGTTCTGGGAGACACTCAAGGAAACATTCGGCTTAAAGGACTTTCTCAGGTGCCTGTGAAGTCCATGTTGGAATTTAACAAACTGTATGTTAGTGGGGGTACTTCCCGTAAACCAACACCAAAGGGACCAGCTGAACTTTCTCGTAGATGCCATAAGGGATTGATAGTATATGTATCATCTCAAAGAGAAAATTCAGATACCCTTCAAGTCAGCAAGTTAAACTTTATTGACTTAGCAGGTTATGAAGATACAAGAAGGAAGAGCATTGACTGCATTAATCATGTTGAGAGCAGTAAAATCAATAAGTCAATCTATGCCATGATCAATGTTGTTAATGCAGTGAGTTCCAATGGAAACCATGTGCCTTATCGGGAAAGCAAACTCACACATTTATTGCAAGACTCCCTGGGAGGGATGAGTAGAGTTCTGACAATCACTTGCTTGAAACCGTCATTTTGCCAAGATTCTATTTACATGGTAAGCTTGGTGTCTCGCTCTTCTCAAAACACCAATCAGGCTGTCACAGTCTCAACAAAGAAAATTAAAGGTCTGACAAGATCAGAAGTGCGTTCATCACAGAAGGGCCATGTATCCATGACTACTTCTGCTATAGCAAAGAAACAAACTGTCTCCCGAGTGCCTCTTTCTGAGAAGAAAGTCAGTGGGCCTCTTTCTTCCAAGAAAGCAAATAGTAGTATGACTTCCGCATTGAAAGGAAGGAAACTATTTGATGAAAGAGGTCGTTTGACCAAATCAATGAAGGCAAGTGCTATGTCAGATATTGTCTCAACCATTGAAACTTCTGTAGCTGATAAGGAAGAGACCATTTCAAATGTTCCTGAAGGAACCGAGCAGCTTAAATCTGAGAATCCATCATCAAATGCTTTGAATCCCGTAGAACCTGCATCTCTTGTGGTAAAGGACGAATTATTATCAGATGATCCAAAGCATGCTGAACATTCTTTGAAGGAAGAAAAGGAGCATTTGCTATTGGATGATCCAAAGCATGCTGAAGATAATTCAATTGCAGAAAAGGATGTTTCTGTGAATGGTGATGGCCCTACTGAGGAAGTTAATCCTAGTGACAATAGCAGTAGCAGATATGCATTGGCTTTAGTTGAAGAAGTTCATGACATGGAGAAGGAAAACAATAACTTCCCAGACAACGAAGATGCATCACCTCCAATCAGTGCACGATTACAAGAATTGGCATTAAAAATGAAATCACTTTGTTCTTCAACTCCATTGTGCATTACGATGCCAGAGGAGAAAGATACTTCATCCAATAACTTCCTCTGTACTGACATCGTGGAATCAAACGCCCCAGTTGCCAGTCAGGATTTAAGCCACAATGATAGTTGGGAGGTTGCAAATGTCAACAACATCAAGGAACCAAAGACTCCAGTTGTGGAACCAAAAACCCCAGTTGCTAATCAGGATATAAAACACAATGACAGATGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGTCCGCAGTACTGGTGTCAAGCAATCTCTTGTTCAAGAATATCTTAGCTTCTTAAACACCGCTAGCAAGGAAGATCTGAAAAGATTAAAGGGAATTGGAGAGAAAAGAGCAACATACATACTTGATTGCCGTGAAGAAACTCCCGAGCCCTTCAAGAGTCTTGATGATTTACAAGACATTGGACTTTCAGTGAAGCAGATTAAGAACTTGATGAAGAAAGCAGGAGGAGGGCTTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

754

Amino Acids

82.32

Weight (kDa)

6.03

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	57 - 325	2.1e-59	Kinesin motor domain
Microtub_bd	PF16796	61 - 166	5.6e-10	Microtubule binding
HHH_3	PF12836	692 - 734	1.5e-07	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27270 AT5G27270 AT5G27270 AT5G27270 AT5G27270
fragaria_vesca	FvH4_7g33960 FvH4_7g33960
malus_domestica	MD01G1235800.v1.1
prunus_persica	Prupe.2G325900_v2.0.a1 Prupe.2G325900_v2.0.a1
pyrus_communis	pycom01g24390
rosa_chinensis	RchiOBHm_Chr1g0384191
rosa_laevigata	RLG00000026061
rosa_multiflora	Rmu_sc0005139.1_g000006 Rmu_sc0014578.1_g000006
rosa_roxburghii	Rroxscaffold_4G00276870
rosa_rugosa	Rorug01G0445600
rosa_samantha	Rh1AG471100 Rh1BG428800 Rh1CG441500 Rh1DG461600
rosa_wichuraiana	Rw1G040140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	749, 1432
AccB1I	GGYRCC	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	58
AciI	CCGC	7 cut(s)	43, 87, 104, 150, 1227, 2026, 2082
AclI	AACGTT	1 cut(s)	2015
AclWI	GGATC	5 cut(s)	92, 140, 507, 1457, 1514
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	593, 712
AcuI	CTGAAG	2 cut(s)	1383, 1554
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	3 cut(s)	622, 1822, 2032
AfiI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1588
AjnI	CCWGG	3 cut(s)	292, 385, 927
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 572, 604
AluBI	AGCT	7 cut(s)	338, 360, 653, 1005, 1331, 1378, 2070
AluI	AGCT	7 cut(s)	338, 360, 653, 1005, 1331, 1378, 2070
Alw21I	GWGCWC	1 cut(s)	1717
Alw26I	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
Alw44I	GTGCAC	1 cut(s)	1713
AlwI	GGATC	5 cut(s)	92, 140, 507, 1457, 1514
Ama87I	CYCGRG	2 cut(s)	1155, 2165
AoxI	GGCC	5 cut(s)	105, 256, 1105, 1187, 1579
ApaLI	GTGCAC	1 cut(s)	1713
ApeKI	GCWGC	1 cut(s)	1375
ApoI	RAATTY	2 cut(s)	593, 712
AseI	ATTAAT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	1647
AspS9I	GGNCC	6 cut(s)	64, 478, 647, 1105, 1187, 1580
AsuHPI	GGTGA	4 cut(s)	16, 151, 1586, 1692
AsuNHI	GCTAGC	1 cut(s)	2084
AvaI	CYCGRG	2 cut(s)	1155, 2165
AvaII	GGWCC	3 cut(s)	64, 478, 647
BaeGI	GKGCMC	1 cut(s)	1717
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	2172
BarI	GAAGNNNNNNTAC	2 cut(s)	1207, 1239
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	1717
BbvI	GCAGC	1 cut(s)	1387
BccI	CCATC	3 cut(s)	1402, 1571, 1974
BceAI	ACGGC	2 cut(s)	189, 2136
BciT130I	CCWGG	3 cut(s)	294, 387, 929
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BfaI	CTAG	4 cut(s)	339, 357, 1602, 2085
BfmI	CTRYAG	2 cut(s)	1131, 1326
BfuAI	ACCTGC	2 cut(s)	749, 1432
BfuI	GTATCC	1 cut(s)	1123
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	2095
BisI	GCNGC	4 cut(s)	43, 88, 105, 1376
BlsI	GCNGC	4 cut(s)	44, 89, 106, 1377
BmcAI	AGTACT	1 cut(s)	2032
Bme1390I	CCNGG	3 cut(s)	294, 387, 929
Bme18I	GGWCC	3 cut(s)	64, 478, 647
BmeT110I	CYCGRG	2 cut(s)	1155, 2165
BmgT120I	GGNCC	6 cut(s)	64, 478, 647, 1105, 1187, 1580
BmiI	GGNNCC	5 cut(s)	573, 648, 1369, 1914, 1935
BmrFI	CCNGG	3 cut(s)	294, 387, 929
BmrI	ACTGGG	2 cut(s)	1841, 1940
BmsI	GCATC	5 cut(s)	659, 1436, 1684, 1706, 1770
BmtI	GCTAGC	1 cut(s)	2088
BmuI	ACTGGG	2 cut(s)	1841, 1940
BpmI	CTGGAG	3 cut(s)	315, 323, 1908
BpuEI	CTTGAG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	2 cut(s)	183, 1337
BsaJI	CCNNGG	4 cut(s)	108, 927, 928, 2006
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1588
Bse1I	ACTGG	5 cut(s)	1847, 1854, 1925, 1946, 2038
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	294, 387, 929
BseDI	CCNNGG	4 cut(s)	108, 927, 928, 2006
BseGI	GGATG	5 cut(s)	446, 942, 1522, 1564, 1802
BseLI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1588
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	5 cut(s)	420, 581, 1161, 1377, 1578
BseNI	ACTGG	5 cut(s)	1847, 1854, 1925, 1946, 2038
BseRI	GAGGAG	2 cut(s)	1802, 2262
BseSI	GKGCMC	1 cut(s)	1717
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	1387
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	5 cut(s)	107, 258, 1107, 1189, 1581
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	1717
BsiHKCI	CYCGRG	2 cut(s)	1155, 2165
BsiSI	CCGG	3 cut(s)	101, 117, 153
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1588
BsmAI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	5 cut(s)	107, 258, 1107, 1189, 1581
Bso31I	GGTCTC	2 cut(s)	183, 1337
BsoBI	CYCGRG	2 cut(s)	1155, 2165
Bsp1286I	GDGCHC	2 cut(s)	1717, 2172
Bsp143I	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
Bsp68I	TCGCGA	1 cut(s)	58
BspACI	CCGC	7 cut(s)	43, 87, 104, 150, 1227, 2026, 2082
BspANI	GGCC	5 cut(s)	107, 258, 1107, 1189, 1581
BspCNI	CTCAG	5 cut(s)	421, 580, 1162, 1378, 1579
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	1651
BspLI	GGNNCC	5 cut(s)	573, 648, 1369, 1914, 1935
BspMI	ACCTGC	2 cut(s)	749, 1432
BspOI	GCTAGC	1 cut(s)	2088
BspPI	GGATC	5 cut(s)	92, 140, 507, 1457, 1514
BspQI	GCTCTTC	2 cut(s)	776, 1024
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	2 cut(s)	183, 1337
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	5 cut(s)	1847, 1854, 1925, 1946, 2038
BssECI	CCNNGG	4 cut(s)	108, 927, 928, 2006
BssMI	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
BssNI	GRCGYC	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	2006
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	294, 387, 929
Bst4CI	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
Bst6I	CTCTTC	3 cut(s)	776, 1024, 1335
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	150, 202, 1473, 1530, 2086
BstDEI	CTNAG	7 cut(s)	429, 567, 754, 1170, 1386, 1587, 2066
BstF5I	GGATG	5 cut(s)	446, 942, 1522, 1564, 1802
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	9 cut(s)	84, 100, 135, 502, 846, 1082, 1465, 1522, 2098
BstMAI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BstMBI	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1850
BstNI	CCWGG	3 cut(s)	294, 387, 929
BstNSI	RCATGY	2 cut(s)	1475, 1532
BstSCI	CCNGG	3 cut(s)	292, 385, 927
BstSFI	CTRYAG	2 cut(s)	1131, 1326
BstSLI	GKGCMC	1 cut(s)	1717
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	1387
BstX2I	RGATCY	4 cut(s)	97, 132, 499, 2095
BstYI	RGATCY	4 cut(s)	97, 132, 499, 2095
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	5 cut(s)	107, 258, 1107, 1189, 1581
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	446, 942, 1522, 1564, 1802
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	6 cut(s)	175, 318, 867, 1189, 1717, 2217
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	749, 1432
Cac8I	GCNNGC	5 cut(s)	150, 202, 1473, 1530, 2086
CciI	TCATGA	1 cut(s)	1651
Cfr13I	GGNCC	6 cut(s)	64, 478, 647, 1105, 1187, 1580
CseI	GACGC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	621, 1821, 2031
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviQI	GTAC	3 cut(s)	621, 1821, 2031
DdeI	CTNAG	7 cut(s)	429, 567, 754, 1170, 1386, 1587, 2066
DpnI	GATC	9 cut(s)	83, 99, 134, 501, 845, 1081, 1464, 1521, 2097
DpnII	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	3 cut(s)	776, 1024, 1335
EarI	CTCTTC	3 cut(s)	776, 1024, 1335
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	2006
Eco24I	GRGCYC	1 cut(s)	2172
Eco31I	GGTCTC	2 cut(s)	183, 1337
Eco47I	GGWCC	3 cut(s)	64, 478, 647
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	1383, 1554
Eco88I	CYCGRG	2 cut(s)	1155, 2165
EcoRII	CCWGG	3 cut(s)	292, 385, 927
EcoT14I	CCWWGG	1 cut(s)	2006
EcoT22I	ATGCAT	2 cut(s)	1630, 1699
EcoT38I	GRGCYC	1 cut(s)	2172
ErhI	CCWWGG	1 cut(s)	2006
FalI	AAGNNNNNCTT	6 cut(s)	344, 376, 728, 760, 2049, 2081
FaqI	GGGAC	1 cut(s)	660
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	4 cut(s)	43, 88, 105, 1376
FokI	GGATG	5 cut(s)	453, 949, 1529, 1571, 1789
FriOI	GRGCYC	1 cut(s)	2172
Fsp4HI	GCNGC	4 cut(s)	43, 88, 105, 1376
FspBI	CTAG	4 cut(s)	339, 357, 1602, 2085
GluI	GCNGC	4 cut(s)	43, 88, 105, 1376
GsuI	CTGGAG	3 cut(s)	315, 323, 1908
HaeIII	GGCC	5 cut(s)	107, 258, 1107, 1189, 1581
HapII	CCGG	3 cut(s)	101, 117, 153
HgaI	GACGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	1900, 1999
HindII	GTYRAC	2 cut(s)	1900, 1999
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	9 cut(s)	69, 212, 923, 986, 1390, 1411, 1835, 1921, 2179
HpaII	CCGG	3 cut(s)	101, 117, 153
HphI	GGTGA	4 cut(s)	16, 151, 1586, 1692
Hpy166II	GTNNAC	5 cut(s)	142, 632, 1715, 1900, 1999
Hpy8I	GTNNAC	5 cut(s)	142, 632, 1715, 1900, 1999
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	9 cut(s)	734, 771, 1096, 1233, 1276, 1358, 1483, 1657, 2182
HpyCH4III	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
HpyCH4IV	ACGT	1 cut(s)	2015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1850
HpyF3I	CTNAG	7 cut(s)	429, 567, 754, 1170, 1386, 1587, 2066
HpySE526I	ACGT	1 cut(s)	2015
Hsp92I	GRCGYC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
LguI	GCTCTTC	2 cut(s)	776, 1024
LmnI	GCTCC	3 cut(s)	50, 335, 1501
Lsp1109I	GCAGC	1 cut(s)	1387
LweI	GCATC	5 cut(s)	659, 1436, 1684, 1706, 1770
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	4 cut(s)	339, 357, 1602, 2085
MaeII	ACGT	1 cut(s)	2015
MaeIII	GTNAC	3 cut(s)	172, 1042, 1604
MalI	GATC	9 cut(s)	83, 99, 134, 501, 845, 1081, 1464, 1521, 2097
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
MfeI	CAATTG	2 cut(s)	229, 1545
MflI	RGATCY	4 cut(s)	97, 132, 499, 2095
MhlI	GDGCHC	2 cut(s)	1717, 2172
MlyI	GAGTC	5 cut(s)	63, 221, 917, 1915, 2188
MmeI	TCCRAC	5 cut(s)	33, 72, 91, 144, 570
Mph1103I	ATGCAT	2 cut(s)	1630, 1699
MroXI	GAANNNNTTC	1 cut(s)	1647
MslI	CAYNNNNRTG	2 cut(s)	486, 1778
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	101, 117, 153
MspR9I	CCNGG	3 cut(s)	294, 387, 929
MunI	CAATTG	2 cut(s)	229, 1545
MvaI	CCWGG	3 cut(s)	294, 387, 929
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1850
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
NheI	GCTAGC	1 cut(s)	2084
NlaIV	GGNNCC	5 cut(s)	573, 648, 1369, 1914, 1935
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	3 cut(s)	172, 1042, 1604
NruI	TCGCGA	1 cut(s)	58
NsiI	ATGCAT	2 cut(s)	1630, 1699
NspI	RCATGY	2 cut(s)	1475, 1532
PaeI	GCATGC	2 cut(s)	1475, 1532
PagI	TCATGA	1 cut(s)	1651
PasI	CCCWGGG	1 cut(s)	928
PciSI	GCTCTTC	2 cut(s)	776, 1024
PdmI	GAANNNNTTC	1 cut(s)	1647
PfeI	GAWTC	4 cut(s)	986, 1390, 1411, 1835
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	44, 89, 106, 1377
PleI	GAGTC	5 cut(s)	63, 220, 917, 1915, 2187
PpsI	GAGTC	5 cut(s)	63, 220, 917, 1915, 2187
PshBI	ATTAAT	1 cut(s)	798
Psp1406I	AACGTT	1 cut(s)	2015
Psp6I	CCWGG	3 cut(s)	292, 385, 927
PspGI	CCWGG	3 cut(s)	292, 385, 927
PspN4I	GGNNCC	5 cut(s)	573, 648, 1369, 1914, 1935
PspPI	GGNCC	6 cut(s)	64, 478, 647, 1105, 1187, 1580
PsuI	RGATCY	4 cut(s)	97, 132, 499, 2095
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	653
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	3 cut(s)	622, 1822, 2032
RsaNI	GTAC	3 cut(s)	621, 1821, 2031
RseI	CAYNNNNRTG	2 cut(s)	486, 1778
SapI	GCTCTTC	2 cut(s)	776, 1024
SatI	GCNGC	4 cut(s)	43, 88, 105, 1376
Sau3AI	GATC	9 cut(s)	81, 97, 132, 499, 843, 1079, 1462, 1519, 2095
Sau96I	GGNCC	6 cut(s)	64, 478, 647, 1105, 1187, 1580
ScaI	AGTACT	1 cut(s)	2032
SchI	GAGTC	5 cut(s)	63, 221, 917, 1915, 2188
ScrFI	CCNGG	3 cut(s)	294, 387, 929
SduI	GDGCHC	2 cut(s)	1717, 2172
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	5 cut(s)	659, 1436, 1684, 1706, 1770
SfcI	CTRYAG	2 cut(s)	1131, 1326
SinI	GGWCC	3 cut(s)	64, 478, 647
SmiMI	CAYNNNNRTG	2 cut(s)	486, 1778
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
SphI	GCATGC	2 cut(s)	1475, 1532
SsiI	CCGC	7 cut(s)	43, 87, 104, 150, 1227, 2026, 2082
SspMI	CTAG	4 cut(s)	339, 357, 1602, 2085
StyD4I	CCNGG	3 cut(s)	292, 385, 927
StyI	CCWWGG	1 cut(s)	2006
TaaI	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
TaiI	ACGT	1 cut(s)	2018
TaqI	TCGA	2 cut(s)	374, 2259
TatI	WGTACW	2 cut(s)	1820, 2030
TauI	GCSGC	3 cut(s)	45, 90, 107
TfiI	GAWTC	4 cut(s)	986, 1390, 1411, 1835
TscAI	CASTG	6 cut(s)	175, 325, 867, 1189, 1717, 2217
TseFI	GTSAC	3 cut(s)	172, 1042, 1604
TseI	GCWGC	1 cut(s)	1375
Tsp45I	GTSAC	3 cut(s)	172, 1042, 1604
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	6 cut(s)	175, 325, 867, 1189, 1717, 2217
Tth111I	GACNNNGTC	1 cut(s)	170
VneI	GTGCAC	1 cut(s)	1713
VpaK11BI	GGWCC	3 cut(s)	64, 478, 647
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	2 cut(s)	593, 712
XceI	RCATGY	2 cut(s)	1475, 1532
XmnI	GAANNNNTTC	1 cut(s)	1647
XspI	CTAG	4 cut(s)	339, 357, 1602, 2085
ZrmI	AGTACT	1 cut(s)	2032
Zsp2I	ATGCAT	2 cut(s)	1630, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.