Rh1AG471100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009191
Physical Location & Seq
Forward (+)
68361783 .. 68367016
5234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG471100.1

Sequence Viewer

Length: 3231 bp
ATGGAGTCGCTCCATTTCAGCTCAAACTACTCCTCTTTTCTCTGTACCACTATTCCACTGACCACTTGTTCTCCCTTGAGCAGCTCCTCAAGAAAACCCAAGATTCGCGTCCGCATCCGAATCCGATCCTCAGTGACCCCAGACCCGTGGTCTCTCAGCGACGGAAACCCGGACCGGCCCAAGCCCAAGTCCAAGCACCCAAAGAACCCTCTCTCCGACGACAACGCCCGCCGCATAATCAAGTCCAAGGCCCTGTACCTGAGCTCCCTCCGCCGCAACCAGGGCCCACACGCCCAGACCCCTAAGTGGATCAAGAGGACGCCGGAGCAGATGGTCCGCTATTTGCAGGACGACAGAAACGGCCACCTCTACGGCCGCCACGTCGTCGCCGCCATCAAGCGCGTCAGGTCACTCTCCGAGAAGGCCGAGGGCGAGTACGACATGAGAACCGTCATGTCGTCTTTTGTGGGGAAGCTCAGCTTCAGAGAAATGTGCGTGGTGCTTAAGGAACAAAAGGGGTGGAGGCAAGTCAGGGACTTGTTTTCCTGGATGAAATTGCAGTTAAGCTACCGCCCAAGTGTGATTGTGTACACTATAGTTCTAAGGACGTATGGGCAAATTGGGAAGATCAAGCTTGCTGAGCAGACCTTCTTGGAGATGCTTGAAGCTGGTTGTGAACCTGATGAAGTTGCCTGTGGAACCATGCTCTGCACATATGCCCGCTGGGGCCGCGAAAAGGCTATGCTGGCATTTTATTCAGCTGTGCAGGAGAGAGGGATTCTACTTTCTGTTGCTGTTTATAATTTCATGTTGTCCTCCTTGCAGAAGAAATCGCTCCACGAAAAAGTCGTGCAGGTTTGGAGACAGATGGTGGGGGAGGGAGTGGCGCCGAATAAGTTTACTTATACTGTAGTGATTAGCTCGCTTGTCAAAGAAGGCCTCGTTGAGGAGGCTTTCAAGTGTTTTGATGAGTGTAAGAGTGTTGGATTTGTTCCTGAGGAGGCGACTTATAGTTTGCTCATCAGTTTAAGCACCAAAAGTGGCGACTATGACCAAGCACTAAGATTGTATGAGGACATGAGATCTATGAAAATTGTTCCGAGCAACTACACCTGTGCTTCATTGCTCACTTTGTATTACAAAAAGGAGGATTATTCTAAAGCCCTTTCTCTCTTTTCAGAAATGGAGAGAGAGAAAATTGCGGCTGATGAAGTCATATATGGGTTGCTGATTAGAATATATGGAAAGCTTGGTCTTTATGAGGATGCTCGGACAACATTTAAAGAGATGGAGCAGCTGGGTCTACTTAGTGATCAGAAAACATATTTAGCAATGGCACAAGTCAATCTCAATTCAGGGGATTATGACAAAGCTTTGGAGGTCATTGAACTAATGAAGTCTAGAAACAACATTTGGCTCTCAAGGTTTGCTTATATTGTCTTATTGCAGTGTTATGTTATGAAGGAAGATCTTAGTTCTGCCGAAGTTACATTTCAGGCTCTATCCAAGACTGGACTCCCAGATGCAGGTTCTTGTAATGATATGCTCAATTTGTATACAAGACTCGACTTAATGGAAAAGGCCAAGGACTTTATTGTCCAGATAAGAAGAGACCGAGTAGAATTTGACGAGGAGCTTTGCAGAACAGTTATGAGTATATATTGCAAGGAGGGAATGGTTGGAGATACTGAACAGTTAATAAAAGAGCTCAGCTCAAGTCCATTATTCAAAGATAGTAGATTCATCCAAACAATTTGTAGGGCTATGTATGAACACAAGGATGATGAACAACTTGAAGGTAAACTTGTGACCTTTTTCCAGCCGGATACTACAGCCCTTGGATTGGTGCTTAGTCTCTATCTTGCAAATGGCAATATGAGTAAGACAGACAAAGTTGTGGCGTTGTTGCTTGAGAATTCTGGTGGCTTATCAACTGCTAGTCAGCTCATCAGAAATATTATCAGAGATGGTGATGCATATAAAGCAGAAATTCATATCAATCAATTGCTCAAGCTTGGCTGCAGAGTGGATAATGCAACAATTTCTTCTTTGATTAATTTATATGGAAAGAAACACGAGCTGAAAAAGGCAGAAGAGATATATACAGCATTTGCAGATTCACCTCTAGCTAAAAAGTTACTATGTAACTCACTGCTTGATGCTTATGCCAAATGTGGTAAATCAGAGGAAGCATACTCACTTTACAGACGGCTTACAGAAGAAGGGCATGATCTGGATGCTGTTGCCATCAGCATAGTTGTGAATGCTTTGACTCATAGTGGAAAACATAGAGAAGCAGAGAACGTCATCCGCCAAAGTCTTGAACACCGATTGGAGCTTGATACTGTGGCATACAATACTTTCATTAAGGCTATGCTGGGAGCAGGTAGGTTACATTTTGCTTCTAGTATCTATGAGTGCATGCTTTCTGAGGGGGTTACTCCATCAATTCAGACATATAACACCATGATCAGTGTTTACGGACGTGGTAGAAAGTTGGATAGGGCTGTGGAAATGTTTAATACAGCTTGTAGCTTGGGTTTGTCTCCGGATGAAAAGGCATACATGAATTTGATTAGCTACTATGGAAAAGCTGGAAAAAGGCATGAAGCTTCCATGCTATTCACCAAAATGCGTGAAAGCATAAAACCTGGAATGGTAAGTTACAATATAATGATGAATGTATATGCTACTGGAGGACTTTATCAAGAAGCTGAGAAATTATTCAAAGCCATGAAGCAAGATGGTTGGTTACCTGACTCATTCACTTACCTCTCCCTAGTTCGAGCTTACACAGAGAATTTGAAATATTCAGAAGCAGAGGAAACCATTAATTCTATGCAAGAAGACGGTGTCTATCCTTCATGTTCACATTTTAACCTCATTCTCTCTGCTTTTGCCAAAATGGGATTGATAGGGGAAGCAGAAAGAGTTTATGAGGAACTACTTGCAGCAGGTTTAAGCCCAGATGCAGCTTGTTATGGGACTATGCTGCGAGGTTACATGGACTACGGACACGTGGAAGAAGGCATCAAGTTCTATGAACAAATAAGTGAGTCTATAAAGGCAGACAGGTTTATTTTGAGTGCAGCTGTGCATTTTTACAGATCTGTAGGAAAGGAAGTAGAAGCTCAGAGTGTTTTGCATTCCATGAGTAGCATGGGAATTTCATTTCTGGAGAACCTAGAAGTTGGATCCAAGCTAAAATCTCCGCCAATGTTGCAGAACTGA

Protein Analysis

1076

Amino Acids

121.79

Weight (kDa)

7.87

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 192 - 240 1e-07 PPR repeat family
PPR_long PF17177 246 - 377 1.8e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 263 - 311 1.9e-09 PPR repeat family
PPR_1 PF12854 294 - 324 3.9e-06 PPR repeat
PPR PF01535 300 - 330 4.7e-06 PPR repeat
PPR_2 PF13041 304 - 342 4e-06 PPR repeat family
PPR_long PF17177 315 - 418 8.3e-10 Pentacotripeptide-repeat region of PRORP
PPR_long PF17177 381 - 494 1.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 715 - 757 5e-06 PPR repeat family
PPR_3 PF13812 778 - 828 1.8e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 781 - 827 1e-09 PPR repeat family
PPR_2 PF13041 815 - 855 5.2e-06 PPR repeat family
PPR_3 PF13812 846 - 896 8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 884 - 931 2.5e-11 PPR repeat family
PPR PF01535 887 - 916 7.5e-07 PPR repeat
PPR_long PF17177 903 - 1020 3.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 907 - 968 1.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 958 - 1001 1.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AasI GACNNNNNNGTC 1 cut(s) 1595
Acc36I ACCTGC 4 cut(s) 844, 1517, 2375, 2945
AccB1I GGYRCC 1 cut(s) 886
AccI GTMKAC 2 cut(s) 1303, 1556
AccII CGCG 3 cut(s) 108, 402, 732
AccIII TCCGGA 1 cut(s) 2548
AclWI GGATC 4 cut(s) 120, 317, 3189, 3202
AcoI YGGCCR 2 cut(s) 361, 373
AcsI RAATTY 6 cut(s) 1622, 1915, 1989, 2569, 2800, 3165
AcuI CTGAAG 1 cut(s) 466
AcvI CACGTG 1 cut(s) 3019
AcyI GRCGYC 2 cut(s) 320, 887
AfaI GTAC 4 cut(s) 46, 257, 437, 590
AfiI CCNNNNNNNGG 6 cut(s) 280, 306, 736, 946, 1526, 1843
AflII CTTAAG 1 cut(s) 503
AflIII ACRYGT 1 cut(s) 3016
AgsI TTSAA 8 cut(s) 665, 958, 1388, 1729, 1796, 2324, 2728, 2806
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 2 cut(s) 382, 2486
AjnI CCWGG 3 cut(s) 279, 545, 2650
AjuI GAANNNNNNNTTGG 2 cut(s) 1396, 1428
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
Alw21I GWGCWC 2 cut(s) 266, 1710
Alw26I GTCTC 5 cut(s) 156, 856, 1605, 1859, 2550
AlwI GGATC 4 cut(s) 120, 317, 3189, 3202
Aor13HI TCCGGA 1 cut(s) 2548
AoxI GGCC 9 cut(s) 176, 249, 283, 361, 373, 423, 727, 937, 1581
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 7 cut(s) 81, 1294, 2019, 2951, 2972, 2992, 3089
ApoI RAATTY 6 cut(s) 1622, 1915, 1989, 2569, 2800, 3165
ArsI GACNNNNNNTTYG 2 cut(s) 997, 1029
AseI ATTAAT 2 cut(s) 2055, 2832
Asp700I GAANNNNTTC 1 cut(s) 2723
AspLEI GCGC 2 cut(s) 402, 889
AspS9I GGNCC 7 cut(s) 172, 177, 250, 283, 284, 334, 727
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 3 cut(s) 1982, 2112, 2617
AvaII GGWCC 2 cut(s) 172, 334
AxyI CCTNAGG 1 cut(s) 996
BaeGI GKGCMC 1 cut(s) 287
BamHI GGATCC 1 cut(s) 3194
BanI GGYRCC 1 cut(s) 886
BanII GRGCYC 3 cut(s) 266, 287, 1710
BauI CACGAG 1 cut(s) 2075
BbrPI CACGTG 1 cut(s) 3019
BbsI GAAGAC 1 cut(s) 2853
Bbv12I GWGCWC 2 cut(s) 266, 1710
BbvI GCAGC 7 cut(s) 93, 1306, 2006, 2963, 2979, 2984, 3101
BccI CCATC 8 cut(s) 325, 401, 862, 1282, 1961, 2255, 2452, 2738
BceAI ACGGC 3 cut(s) 376, 388, 2225
BciT130I CCWGG 3 cut(s) 281, 547, 2652
BciVI GTATCC 1 cut(s) 1819
BclI TGATCA 2 cut(s) 1312, 2469
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 5 cut(s) 156, 856, 1605, 1859, 2550
BfaI CTAG 6 cut(s) 1401, 1938, 2126, 2406, 2780, 3185
BfmI CTRYAG 5 cut(s) 594, 909, 1830, 2020, 3111
BfoI RGCGCY 1 cut(s) 890
BfrI CTTAAG 1 cut(s) 503
BfuAI ACCTGC 4 cut(s) 844, 1517, 2375, 2945
BfuI GTATCC 1 cut(s) 1819
BglII AGATCT 3 cut(s) 1082, 1468, 3107
BlpI GCTNAGC 3 cut(s) 476, 639, 1709
Bme1390I CCNGG 4 cut(s) 170, 281, 547, 2652
Bme18I GGWCC 2 cut(s) 172, 334
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgBI CACGTC 2 cut(s) 382, 2486
BmgT120I GGNCC 7 cut(s) 172, 177, 250, 283, 284, 334, 727
BmiI GGNNCC 5 cut(s) 285, 700, 728, 888, 3196
BmrFI CCNGG 4 cut(s) 170, 281, 547, 2652
BmsI GCATC 9 cut(s) 123, 648, 1255, 1513, 1963, 2149, 2227, 2959, 3039
BpiI GAAGAC 1 cut(s) 2853
BplI GAGNNNNNCTC 2 cut(s) 1697, 1729
BpmI CTGGAG 2 cut(s) 2715, 3197
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 3 cut(s) 476, 639, 1709
BpuEI CTTGAG 6 cut(s) 73, 97, 1405, 1699, 1931, 1994
BpuMI CCSGG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 3019
BsaHI GRCGYC 2 cut(s) 320, 887
BsaI GGTCTC 2 cut(s) 156, 1605
BsaJI CCNNGG 6 cut(s) 146, 246, 280, 426, 1584, 1837
BsaWI WCCGGW 1 cut(s) 2548
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 197, 227, 248, 278
Bsc4I CCNNNNNNNGG 6 cut(s) 280, 306, 736, 946, 1526, 1843
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 1516, 2698
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 2 cut(s) 1121, 1338
BseAI TCCGGA 1 cut(s) 2548
BseBI CCWGG 3 cut(s) 281, 547, 2652
BseDI CCNNGG 6 cut(s) 146, 246, 280, 426, 1584, 1837
BseGI GGATG 8 cut(s) 114, 555, 1270, 1743, 1786, 2242, 2307, 2557
BseLI CCNNNNNNNGG 6 cut(s) 280, 306, 736, 946, 1526, 1843
BseMI GCAATG 2 cut(s) 1121, 1338
BseNI ACTGG 2 cut(s) 1516, 2698
BseRI GAGGAG 5 cut(s) 22, 76, 962, 1013, 1646
BseSI GKGCMC 1 cut(s) 287
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 7 cut(s) 93, 1306, 2006, 2963, 2979, 2984, 3101
BseYI CCCAGC 3 cut(s) 723, 1297, 2377
BsgI GTGCAG 4 cut(s) 694, 785, 872, 3108
Bsh1236I CGCG 3 cut(s) 108, 402, 732
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 9 cut(s) 178, 251, 285, 363, 375, 425, 729, 939, 1583
BshNI GGYRCC 1 cut(s) 886
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 2 cut(s) 266, 1710
BsiSI CCGG 5 cut(s) 170, 175, 323, 1823, 2549
BslFI GGGAC 2 cut(s) 548, 2998
BslI CCNNNNNNNGG 6 cut(s) 280, 306, 736, 946, 1526, 1843
BsmAI GTCTC 5 cut(s) 156, 856, 1605, 1859, 2550
BsmFI GGGAC 2 cut(s) 548, 2998
BsmI GAATGC 2 cut(s) 2269, 3145
BsnI GGCC 9 cut(s) 178, 251, 285, 363, 375, 425, 729, 939, 1583
Bso31I GGTCTC 2 cut(s) 156, 1605
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 266, 287, 1710
Bsp13I TCCGGA 1 cut(s) 2548
Bsp1407I TGTACA 1 cut(s) 588
Bsp1720I GCTNAGC 3 cut(s) 476, 639, 1709
BspANI GGCC 9 cut(s) 178, 251, 285, 363, 375, 425, 729, 939, 1583
BspEI TCCGGA 1 cut(s) 2548
BspFNI CGCG 3 cut(s) 108, 402, 732
BspLI GGNNCC 5 cut(s) 285, 700, 728, 888, 3196
BspMAI CTGCAG 1 cut(s) 2024
BspMI ACCTGC 4 cut(s) 844, 1517, 2375, 2945
BspPI GGATC 4 cut(s) 120, 317, 3189, 3202
BspT107I GGYRCC 1 cut(s) 886
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 2 cut(s) 156, 1605
BsrDI GCAATG 2 cut(s) 1121, 1338
BsrFI RCCGGY 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 2 cut(s) 1516, 2698
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 6 cut(s) 146, 246, 280, 426, 1584, 1837
BssNAI GTATAC 1 cut(s) 1557
BssNI GRCGYC 2 cut(s) 320, 887
BssSI CACGAG 1 cut(s) 2075
BssT1I CCWWGG 3 cut(s) 246, 1584, 1837
Bst1107I GTATAC 1 cut(s) 1557
Bst2BI CACGAG 1 cut(s) 2075
Bst2UI CCWGG 3 cut(s) 281, 547, 2652
Bst4CI ACNGT 6 cut(s) 451, 910, 1648, 1695, 2347, 2852
Bst6I CTCTTC 2 cut(s) 1603, 2088
BstACI GRCGYC 2 cut(s) 320, 887
BstAFI CTTAAG 1 cut(s) 503
BstAUI TGTACA 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 3019
BstC8I GCNNGC 6 cut(s) 229, 636, 721, 747, 923, 2423
BstDSI CCRYGG 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 2751
BstENI CCTNNNNNAGG 1 cut(s) 944
BstF5I GGATG 8 cut(s) 114, 555, 1270, 1743, 1786, 2242, 2307, 2557
BstFNI CGCG 3 cut(s) 108, 402, 732
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 2 cut(s) 402, 889
BstMAI GTCTC 5 cut(s) 156, 856, 1605, 1859, 2550
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 7 cut(s) 270, 282, 640, 729, 746, 1982, 3220
BstNI CCWGG 3 cut(s) 281, 547, 2652
BstNSI RCATGY 1 cut(s) 2425
BstPI GGTNACC 1 cut(s) 2751
BstSCI CCNGG 4 cut(s) 168, 279, 545, 2650
BstSFI CTRYAG 5 cut(s) 594, 909, 1830, 2020, 3111
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 3 cut(s) 108, 402, 732
BstV1I GCAGC 7 cut(s) 93, 1306, 2006, 2963, 2979, 2984, 3101
BstV2I GAAGAC 1 cut(s) 2853
BstX2I RGATCY 4 cut(s) 1082, 1468, 3107, 3194
BstXI CCANNNNNNTGG 1 cut(s) 147
BstYI RGATCY 4 cut(s) 1082, 1468, 3107, 3194
BstZ17I GTATAC 1 cut(s) 1557
BstZI CGGCCG 1 cut(s) 373
Bsu36I CCTNAGG 1 cut(s) 996
BsuI GTATCC 1 cut(s) 1819
BsuRI GGCC 9 cut(s) 178, 251, 285, 363, 375, 425, 729, 939, 1583
BtgI CCRYGG 1 cut(s) 146
BtrI CACGTC 2 cut(s) 382, 2486
BtsCI GGATG 8 cut(s) 114, 555, 1270, 1743, 1786, 2242, 2307, 2557
BtsI GCAGTG 2 cut(s) 1454, 2150
BtsIMutI CAGTG 5 cut(s) 56, 138, 1454, 2150, 2479
BveI ACCTGC 4 cut(s) 844, 1517, 2375, 2945
Cac8I GCNNGC 6 cut(s) 229, 636, 721, 747, 923, 2423
CfoI GCGC 2 cut(s) 402, 889
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 7 cut(s) 172, 177, 250, 283, 284, 334, 727
CpoI CGGWCCG 1 cut(s) 172
CseI GACGC 3 cut(s) 97, 328, 391
Csp6I GTAC 4 cut(s) 45, 256, 436, 589
CspCI CAANNNNNGTGG 2 cut(s) 500, 535
CspI CGGWCCG 1 cut(s) 172
CviQI GTAC 4 cut(s) 45, 256, 436, 589
DinI GGCGCC 1 cut(s) 888
DraI TTTAAA 1 cut(s) 1282
DrdI GACNNNNNNGTC 1 cut(s) 1595
DriI GACNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 1595
EaeI YGGCCR 2 cut(s) 361, 373
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 2 cut(s) 1603, 2088
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 2 cut(s) 1603, 2088
EciI GGCGGA 3 cut(s) 260, 2300, 3201
Ecl136II GAGCTC 2 cut(s) 264, 1708
EclXI CGGCCG 1 cut(s) 373
Eco130I CCWWGG 3 cut(s) 246, 1584, 1837
Eco147I AGGCCT 1 cut(s) 939
Eco24I GRGCYC 3 cut(s) 266, 287, 1710
Eco31I GGTCTC 2 cut(s) 156, 1605
Eco47I GGWCC 2 cut(s) 172, 334
Eco52I CGGCCG 1 cut(s) 373
Eco53kI GAGCTC 2 cut(s) 264, 1708
Eco57I CTGAAG 1 cut(s) 466
Eco72I CACGTG 1 cut(s) 3019
Eco81I CCTNAGG 1 cut(s) 996
Eco91I GGTNACC 1 cut(s) 2751
EcoICRI GAGCTC 2 cut(s) 264, 1708
EcoNI CCTNNNNNAGG 1 cut(s) 944
EcoO109I RGGNCCY 2 cut(s) 250, 283
EcoO65I GGTNACC 1 cut(s) 2751
EcoRI GAATTC 1 cut(s) 1915
EcoRII CCWGG 3 cut(s) 279, 545, 2650
EcoT14I CCWWGG 3 cut(s) 246, 1584, 1837
EcoT22I ATGCAT 1 cut(s) 1978
EcoT38I GRGCYC 3 cut(s) 266, 287, 1710
EgeI GGCGCC 1 cut(s) 888
EheI GGCGCC 1 cut(s) 888
ErhI CCWWGG 3 cut(s) 246, 1584, 1837
FalI AAGNNNNNCTT 6 cut(s) 464, 496, 1414, 1446, 1788, 1820
FaqI GGGAC 2 cut(s) 548, 2998
FauI CCCGC 2 cut(s) 236, 728
FauNDI CATATG 1 cut(s) 715
FbaI TGATCA 2 cut(s) 1312, 2469
FblI GTMKAC 2 cut(s) 1303, 1556
FokI GGATG 8 cut(s) 101, 562, 1277, 1730, 1793, 2249, 2294, 2564
FriOI GRGCYC 3 cut(s) 266, 287, 1710
FspBI CTAG 6 cut(s) 1401, 1938, 2126, 2406, 2780, 3185
GlaI GCGC 2 cut(s) 401, 888
GsaI CCCAGC 3 cut(s) 727, 1301, 2381
GsuI CTGGAG 2 cut(s) 2715, 3197
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 9 cut(s) 178, 251, 285, 363, 375, 425, 729, 939, 1583
HapII CCGG 5 cut(s) 170, 175, 323, 1823, 2549
HgaI GACGC 3 cut(s) 97, 328, 391
HhaI GCGC 2 cut(s) 402, 889
Hin1I GRCGYC 2 cut(s) 320, 887
Hin6I GCGC 2 cut(s) 400, 887
HinP1I GCGC 2 cut(s) 400, 887
HindIII AAGCTT 5 cut(s) 632, 1247, 1371, 2012, 2610
HpaII CCGG 5 cut(s) 170, 175, 323, 1823, 2549
HphI GGTGA 3 cut(s) 1982, 2112, 2617
Hpy166II GTNNAC 9 cut(s) 589, 591, 677, 900, 1304, 1557, 1802, 2479, 2870
Hpy8I GTNNAC 9 cut(s) 589, 591, 677, 900, 1304, 1557, 1802, 2479, 2870
Hpy99I CGWCG 4 cut(s) 164, 221, 386, 389
HpyAV CCTTC 8 cut(s) 415, 658, 929, 1456, 1790, 2216, 2871, 3020
HpyCH4III ACNGT 6 cut(s) 451, 910, 1648, 1695, 2347, 2852
HpyCH4IV ACGT 5 cut(s) 381, 608, 2304, 2485, 3018
HpyF10VI GCNNNNNNNGC 7 cut(s) 270, 282, 640, 729, 746, 1982, 3220
HpySE526I ACGT 5 cut(s) 381, 608, 2304, 2485, 3018
Hsp92I GRCGYC 2 cut(s) 320, 887
HspAI GCGC 2 cut(s) 400, 887
KasI GGCGCC 1 cut(s) 886
Kpn2I TCCGGA 1 cut(s) 2548
Ksp22I TGATCA 2 cut(s) 1312, 2469
LmnI GCTCC 9 cut(s) 15, 89, 269, 325, 840, 1291, 1633, 2335, 2381
Lsp1109I GCAGC 7 cut(s) 93, 1306, 2006, 2963, 2979, 2984, 3101
LweI GCATC 9 cut(s) 123, 648, 1255, 1513, 1963, 2149, 2227, 2959, 3039
MaeI CTAG 6 cut(s) 1401, 1938, 2126, 2406, 2780, 3185
MaeII ACGT 5 cut(s) 381, 608, 2304, 2485, 3018
MboII GAAGA 9 cut(s) 637, 838, 1478, 1620, 2037, 2105, 2231, 2858, 3035
MfeI CAATTG 1 cut(s) 2003
MflI RGATCY 4 cut(s) 1082, 1468, 3107, 3194
MhlI GDGCHC 3 cut(s) 266, 287, 1710
Mly113I GGCGCC 1 cut(s) 887
MlyI GAGTC 6 cut(s) 14, 1509, 1557, 2266, 2753, 3065
MmeI TCCRAC 5 cut(s) 240, 964, 1660, 2478, 3172
Mph1103I ATGCAT 1 cut(s) 1978
MroI TCCGGA 1 cut(s) 2548
MroXI GAANNNNTTC 1 cut(s) 2723
MslI CAYNNNNRTG 3 cut(s) 1779, 2258, 2630
MspA1I CMGCKG 4 cut(s) 723, 761, 1297, 3092
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 5 cut(s) 170, 175, 323, 1823, 2549
MspR9I CCNGG 4 cut(s) 170, 281, 547, 2652
MunI CAATTG 1 cut(s) 2003
Mva1269I GAATGC 2 cut(s) 2269, 3145
MvaI CCWGG 3 cut(s) 281, 547, 2652
MvnI CGCG 3 cut(s) 108, 402, 732
MwoI GCNNNNNNNGC 7 cut(s) 270, 282, 640, 729, 746, 1982, 3220
NarI GGCGCC 1 cut(s) 887
NciI CCSGG 1 cut(s) 170
NdeI CATATG 1 cut(s) 715
NlaIV GGNNCC 5 cut(s) 285, 700, 728, 888, 3196
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 3 cut(s) 133, 408, 1807
NsiI ATGCAT 1 cut(s) 1978
NspI RCATGY 1 cut(s) 2425
PaeI GCATGC 1 cut(s) 2425
PceI AGGCCT 1 cut(s) 939
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 846
PctI GAATGC 2 cut(s) 2269, 3145
PdmI GAANNNNTTC 1 cut(s) 2723
PfeI GAWTC 5 cut(s) 103, 120, 778, 1740, 2117
PflFI GACNNNGTC 1 cut(s) 2852
PfoI TCCNGGA 1 cut(s) 545
PleI GAGTC 6 cut(s) 13, 1509, 1557, 2266, 2753, 3064
PluTI GGCGCC 1 cut(s) 890
PmaCI CACGTG 1 cut(s) 3019
PmlI CACGTG 1 cut(s) 3019
PpsI GAGTC 6 cut(s) 13, 1509, 1557, 2266, 2753, 3064
Ppu21I YACGTR 1 cut(s) 3019
PshBI ATTAAT 2 cut(s) 2055, 2832
PsiI TTATAA 1 cut(s) 801
Psp124BI GAGCTC 2 cut(s) 266, 1710
Psp6I CCWGG 3 cut(s) 279, 545, 2650
PspCI CACGTG 1 cut(s) 3019
PspEI GGTNACC 1 cut(s) 2751
PspFI CCCAGC 3 cut(s) 723, 1297, 2377
PspGI CCWGG 3 cut(s) 279, 545, 2650
PspN4I GGNNCC 5 cut(s) 285, 700, 728, 888, 3196
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 7 cut(s) 172, 177, 250, 283, 284, 334, 727
PstI CTGCAG 1 cut(s) 2024
PsuI RGATCY 4 cut(s) 1082, 1468, 3107, 3194
PsyI GACNNNGTC 1 cut(s) 2852
PvuII CAGCTG 3 cut(s) 761, 1297, 3092
RsaI GTAC 4 cut(s) 46, 257, 437, 590
RsaNI GTAC 4 cut(s) 45, 256, 436, 589
RseI CAYNNNNRTG 3 cut(s) 1779, 2258, 2630
Rsr2I CGGWCCG 1 cut(s) 172
RsrII CGGWCCG 1 cut(s) 172
SacI GAGCTC 2 cut(s) 266, 1710
Sau96I GGNCC 7 cut(s) 172, 177, 250, 283, 284, 334, 727
SchI GAGTC 6 cut(s) 14, 1509, 1557, 2266, 2753, 3065
ScrFI CCNGG 4 cut(s) 170, 281, 547, 2652
SduI GDGCHC 3 cut(s) 266, 287, 1710
SfaNI GCATC 9 cut(s) 123, 648, 1255, 1513, 1963, 2149, 2227, 2959, 3039
SfcI CTRYAG 5 cut(s) 594, 909, 1830, 2020, 3111
SfoI GGCGCC 1 cut(s) 888
SinI GGWCC 2 cut(s) 172, 334
SmiMI CAYNNNNRTG 3 cut(s) 1779, 2258, 2630
SmlI CTYRAG 7 cut(s) 76, 88, 503, 1420, 1714, 1910, 2009
SmoI CTYRAG 7 cut(s) 76, 88, 503, 1420, 1714, 1910, 2009
SphI GCATGC 1 cut(s) 2425
SseBI AGGCCT 1 cut(s) 939
SspDI GGCGCC 1 cut(s) 886
SspI AATATT 2 cut(s) 1957, 2810
SspMI CTAG 6 cut(s) 1401, 1938, 2126, 2406, 2780, 3185
SstI GAGCTC 2 cut(s) 266, 1710
StuI AGGCCT 1 cut(s) 939
StyD4I CCNGG 4 cut(s) 168, 279, 545, 2650
StyI CCWWGG 3 cut(s) 246, 1584, 1837
TaaI ACNGT 6 cut(s) 451, 910, 1648, 1695, 2347, 2852
TaiI ACGT 5 cut(s) 384, 611, 2307, 2488, 3021
TaqI TCGA 2 cut(s) 1566, 2785
TaqII GACCGA 1 cut(s) 1629
TatI WGTACW 1 cut(s) 588
TauI GCSGC 6 cut(s) 234, 276, 378, 392, 732, 1205
TfiI GAWTC 5 cut(s) 103, 120, 778, 1740, 2117
TscAI CASTG 5 cut(s) 63, 138, 1454, 2157, 2479
TseFI GTSAC 3 cut(s) 133, 408, 1807
TseI GCWGC 7 cut(s) 81, 1294, 2019, 2951, 2972, 2992, 3089
Tsp45I GTSAC 3 cut(s) 133, 408, 1807
TspGWI ACGGA 3 cut(s) 177, 2496, 3027
TspRI CASTG 5 cut(s) 63, 138, 1454, 2157, 2479
Tth111I GACNNNGTC 1 cut(s) 2852
Vha464I CTTAAG 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 172, 334
VspI ATTAAT 2 cut(s) 2055, 2832
XagI CCTNNNNNAGG 1 cut(s) 944
XapI RAATTY 6 cut(s) 1622, 1915, 1989, 2569, 2800, 3165
XbaI TCTAGA 1 cut(s) 1400
XceI RCATGY 1 cut(s) 2425
XcmI CCANNNNNNNNNTGG 1 cut(s) 3157
XmiI GTMKAC 2 cut(s) 1303, 1556
XmnI GAANNNNTTC 1 cut(s) 2723
XspI CTAG 6 cut(s) 1401, 1938, 2126, 2406, 2780, 3185
Zsp2I ATGCAT 1 cut(s) 1978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.