FvH4_7g34292

Folate-Biopterin Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011273
Physical Location & Seq
Forward (+)
24203928 .. 24204935
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34292.t1

Sequence Viewer

Length: 1008 bp
ATGACCCTATATCTCCTGTTTAGTAATTTGGGAGCTTCAATTGCTGAGGTTGCCAATGATGCCATTGTTGCTGAGGCAGGAAAACAACATACTTCCGCCAAAAATCCACAAGCATCATCCTCGGGCGAGCTCCAGTCTTTTGTTTGGATGGCTTCAGCGGTGGGTGGAATTCTTGGATTTCTCCTAGGTGGTATTGCCATCGACAGATACTCTCCCCAAAATATGTTCCTATTCTATGGCTTTCTCCTCGGTATTCAGTTCTTCATAAGCATTCTTGTCAAGGAGAGCTCTATGAACCTTCCCAAAAGAAGATTAGATGTTGGAATTCGAGAGAAGCTTTCTGAGCTCTCAATTGCATTAAGAAAACGTGAGATTGCTTACTCAATTACATGGTTTGCAGCATCATATGCCATCATTCCATCATTGACAGGCACGATGTTCTTTTACCAGACACAATATTTGAATATTGACTCGTCGGTGTTGGGAATCTCAAAGGTGTTTGGCCAGGCAGCGATGCTTATGTGGAGTGTCATCTATAATCGTCACCTGAAATCGGTCACACCAAGGAAACTAATTTCAGCCATTCAGGTTACTATGGCTTTATTTATGATTTCTGATGCCTTGTTTGCACAAGGGTTTTACCGAAATATGGGCCTGTCAGACACTTTTTATGTCGTTATATTTTCTGGACTGTCGGAGGTTCTCTTGTTTATTAAGATTCTGCCCTTCAGCATTCTTGTAGCCAAACTCTGCCCACCGGGATGCGAGGGATCGCTAATGGCATTTGTAATGTCTGCAATAGCGGTTGCATTCATTATGAGCGGATATCTTGGTATTGCGCTTGCATCTTATGTTGGGGTTACAGGAAATGATTTCTCAAGGCTTCCGCTTGCCCTCCTAATACAAGCGTTTCTCACACTCTTGCCACTGTATTGGTCACCATGTATCCCTATCCTTGAATTGGAACCTGATCATGTAGACGGAAAACCCATCAGCAAGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

336

Amino Acids

36.75

Weight (kDa)

8.64

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 2 - 327 5.7e-82 BT1 family
MFS_1 PF07690 42 - 273 4.2e-09 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64890
fragaria_vesca FvH4_7g34292
malus_domestica MD07G1311100.v1.1
prunus_persica Prupe.2G330100_v2.0.a1
pyrus_communis pycom07g28340
rosa_chinensis RchiOBHm_Chr1g0384681
rosa_laevigata RLG00000026016
rosa_multiflora Rmu_sc0012136.1_g000022
rosa_roxburghii Rroxscaffold_4G00276470 Rroxscaffold_7G00218000
rosa_rugosa Rorug01G0450700 Rorug01G0450700 Rorug01G0450800
rosa_samantha Rh1AG475200 Rh1BG433400 Rh1CG446800 Rh1CG446900 Rh1DG465900 Rh6BG010000
rosa_wichuraiana Rw1G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 822
AccI GTMKAC 1 cut(s) 978
AciI CCGC 5 cut(s) 96, 158, 803, 822, 887
AclWI GGATC 1 cut(s) 778
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 2 cut(s) 168, 324
AcuI CTGAAG 2 cut(s) 138, 712
AfiI CCNNNNNNNGG 3 cut(s) 553, 649, 961
AgsI TTSAA 3 cut(s) 39, 463, 959
AjnI CCWGG 1 cut(s) 504
AluBI AGCT 5 cut(s) 35, 130, 288, 337, 346
AluI AGCT 5 cut(s) 35, 130, 288, 337, 346
Alw21I GWGCWC 3 cut(s) 132, 290, 348
AlwI GGATC 1 cut(s) 778
Ama87I CYCGRG 1 cut(s) 121
AoxI GGCC 2 cut(s) 502, 652
ApeKI GCWGC 2 cut(s) 398, 509
ApoI RAATTY 2 cut(s) 168, 324
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AspA2I CCTAGG 1 cut(s) 184
AspLEI GCGC 1 cut(s) 841
AspS9I GGNCC 1 cut(s) 652
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 536, 930
AvaI CYCGRG 1 cut(s) 121
AvrII CCTAGG 1 cut(s) 184
BalI TGGCCA 1 cut(s) 504
BanII GRGCYC 3 cut(s) 132, 290, 348
Bbv12I GWGCWC 3 cut(s) 132, 290, 348
BbvCI CCTCAGC 2 cut(s) 45, 72
BbvI GCAGC 2 cut(s) 410, 521
BccI CCATC 5 cut(s) 142, 206, 419, 427, 998
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 1 cut(s) 506
BciVI GTATCC 1 cut(s) 956
BclI TGATCA 1 cut(s) 970
BcnI CCSGG 1 cut(s) 759
BfaI CTAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 956
BisI GCNGC 2 cut(s) 399, 510
BlnI CCTAGG 1 cut(s) 184
BlsI GCNGC 2 cut(s) 400, 511
Bme1390I CCNGG 2 cut(s) 506, 759
BmeT110I CYCGRG 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 966
BmrFI CCNGG 2 cut(s) 506, 759
BmsI GCATC 7 cut(s) 49, 122, 410, 504, 607, 752, 854
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 2 cut(s) 45, 72
BpuEI CTTGAG 1 cut(s) 862
BpuMI CCSGG 1 cut(s) 759
BsaJI CCNNGG 4 cut(s) 120, 184, 247, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 649, 961
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 506
BseDI CCNNGG 4 cut(s) 120, 184, 247, 563
BseGI GGATG 3 cut(s) 116, 153, 767
BseLI CCNNNNNNNGG 3 cut(s) 553, 649, 961
BseMII CTCAG 3 cut(s) 36, 63, 333
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 410, 521
BshFI GGCC 2 cut(s) 504, 654
BsiHKAI GWGCWC 3 cut(s) 132, 290, 348
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 1 cut(s) 758
BslI CCNNNNNNNGG 3 cut(s) 553, 649, 961
BsmI GAATGC 3 cut(s) 270, 732, 809
BsnI GGCC 2 cut(s) 504, 654
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 3 cut(s) 132, 290, 348
Bsp143I GATC 2 cut(s) 770, 970
BspACI CCGC 5 cut(s) 96, 158, 803, 822, 887
BspANI GGCC 2 cut(s) 504, 654
BspCNI CTCAG 3 cut(s) 37, 64, 334
BspLI GGNNCC 1 cut(s) 966
BspPI GGATC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 822
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 120, 184, 247, 563
BssMI GATC 2 cut(s) 770, 970
BssT1I CCWWGG 2 cut(s) 184, 563
Bst2UI CCWGG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 693, 930
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 3 cut(s) 128, 843, 891
BstDEI CTNAG 3 cut(s) 45, 72, 342
BstEII GGTNACC 1 cut(s) 936
BstF5I GGATG 3 cut(s) 116, 153, 767
BstHHI GCGC 1 cut(s) 841
BstKTI GATC 2 cut(s) 773, 973
BstMBI GATC 2 cut(s) 770, 970
BstMWI GCNNNNNNNGC 7 cut(s) 41, 50, 59, 68, 343, 407, 626
BstNI CCWGG 1 cut(s) 506
BstPI GGTNACC 1 cut(s) 936
BstSCI CCNGG 2 cut(s) 504, 757
BstV1I GCAGC 2 cut(s) 410, 521
BstXI CCANNNNNNTGG 1 cut(s) 933
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 2 cut(s) 504, 654
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 3 cut(s) 116, 153, 767
BtsIMutI CAGTG 1 cut(s) 926
Cac8I GCNNGC 3 cut(s) 128, 843, 891
CfoI GCGC 1 cut(s) 841
Cfr13I GGNCC 1 cut(s) 652
CviAII CATG 3 cut(s) 390, 942, 974
DdeI CTNAG 3 cut(s) 45, 72, 342
DpnI GATC 2 cut(s) 772, 972
DpnII GATC 2 cut(s) 770, 970
EaeI YGGCCR 1 cut(s) 502
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 3 cut(s) 130, 288, 346
Eco130I CCWWGG 2 cut(s) 184, 563
Eco24I GRGCYC 3 cut(s) 132, 290, 348
Eco32I GATATC 1 cut(s) 827
Eco53kI GAGCTC 3 cut(s) 130, 288, 346
Eco57I CTGAAG 2 cut(s) 138, 712
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 936
EcoICRI GAGCTC 3 cut(s) 130, 288, 346
EcoO65I GGTNACC 1 cut(s) 936
EcoRI GAATTC 2 cut(s) 168, 324
EcoRII CCWGG 1 cut(s) 504
EcoRV GATATC 1 cut(s) 827
EcoT14I CCWWGG 2 cut(s) 184, 563
EcoT38I GRGCYC 3 cut(s) 132, 290, 348
ErhI CCWWGG 2 cut(s) 184, 563
FaeI CATG 3 cut(s) 393, 945, 977
FatI CATG 3 cut(s) 389, 941, 973
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 1 cut(s) 978
Fnu4HI GCNGC 2 cut(s) 399, 510
FokI GGATG 3 cut(s) 103, 160, 774
FriOI GRGCYC 3 cut(s) 132, 290, 348
Fsp4HI GCNGC 2 cut(s) 399, 510
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 840
GluI GCNGC 2 cut(s) 399, 510
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 2 cut(s) 504, 654
HapII CCGG 1 cut(s) 758
HhaI GCGC 1 cut(s) 841
Hin1II CATG 3 cut(s) 393, 945, 977
Hin6I GCGC 1 cut(s) 839
HinP1I GCGC 1 cut(s) 839
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 3 cut(s) 470, 486, 718
HpaII CCGG 1 cut(s) 758
HphI GGTGA 2 cut(s) 536, 930
Hpy166II GTNNAC 1 cut(s) 979
Hpy188I TCNGA 4 cut(s) 343, 616, 661, 697
Hpy188III TCNNGA 2 cut(s) 329, 687
Hpy8I GTNNAC 1 cut(s) 979
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 308, 736, 994
HpyCH4III ACNGT 2 cut(s) 693, 930
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 6 cut(s) 356, 398, 629, 797, 809, 845
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 50, 59, 68, 343, 407, 626
HpyF3I CTNAG 3 cut(s) 45, 72, 342
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 393, 945, 977
HspAI GCGC 1 cut(s) 839
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 2 cut(s) 770, 970
LmnI GCTCC 2 cut(s) 32, 135
Lsp1109I GCAGC 2 cut(s) 410, 521
LweI GCATC 7 cut(s) 49, 122, 410, 504, 607, 752, 854
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 5 cut(s) 542, 556, 589, 859, 936
MalI GATC 2 cut(s) 772, 972
MbiI CCGCTC 1 cut(s) 822
MboI GATC 2 cut(s) 770, 970
MboII GAAGA 2 cut(s) 253, 321
MfeI CAATTG 2 cut(s) 39, 351
MhlI GDGCHC 3 cut(s) 132, 290, 348
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 8 cut(s) 25, 39, 168, 324, 351, 384, 573, 959
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 301, 675
MnlI CCTC 7 cut(s) 40, 67, 130, 257, 691, 760, 905
Mox20I TGGCCA 1 cut(s) 504
MscI TGGCCA 1 cut(s) 504
MseI TTAA 2 cut(s) 359, 714
MslI CAYNNNNRTG 1 cut(s) 760
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 2 cut(s) 506, 759
MunI CAATTG 2 cut(s) 39, 351
Mva1269I GAATGC 3 cut(s) 270, 732, 809
MvaI CCWGG 1 cut(s) 506
MwoI GCNNNNNNNGC 7 cut(s) 41, 50, 59, 68, 343, 407, 626
NciI CCSGG 1 cut(s) 759
NdeI CATATG 1 cut(s) 406
NdeII GATC 2 cut(s) 770, 970
NlaIII CATG 3 cut(s) 393, 945, 977
NlaIV GGNNCC 1 cut(s) 966
NmuCI GTSAC 3 cut(s) 542, 556, 936
PctI GAATGC 3 cut(s) 270, 732, 809
PfeI GAWTC 2 cut(s) 486, 718
PkrI GCNGC 2 cut(s) 400, 511
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp124BI GAGCTC 3 cut(s) 132, 290, 348
Psp6I CCWGG 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 936
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 966
PspPI GGNCC 1 cut(s) 652
RseI CAYNNNNRTG 1 cut(s) 760
SacI GAGCTC 3 cut(s) 132, 290, 348
SaqAI TTAA 2 cut(s) 359, 714
SatI GCNGC 2 cut(s) 399, 510
Sau3AI GATC 2 cut(s) 770, 970
Sau96I GGNCC 1 cut(s) 652
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 506, 759
SduI GDGCHC 3 cut(s) 132, 290, 348
SfaNI GCATC 7 cut(s) 49, 122, 410, 504, 607, 752, 854
SmiMI CAYNNNNRTG 1 cut(s) 760
SmlI CTYRAG 1 cut(s) 877
SmoI CTYRAG 1 cut(s) 877
Sse9I AATT 8 cut(s) 25, 39, 168, 324, 351, 384, 573, 959
SsiI CCGC 5 cut(s) 96, 158, 803, 822, 887
SspI AATATT 2 cut(s) 458, 466
SspMI CTAG 1 cut(s) 185
SstI GAGCTC 3 cut(s) 132, 290, 348
StyD4I CCNGG 2 cut(s) 504, 757
StyI CCWWGG 2 cut(s) 184, 563
TaaI ACNGT 2 cut(s) 693, 930
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 201, 328
TaqII GACCGA 1 cut(s) 544
TasI AATT 8 cut(s) 25, 39, 168, 324, 351, 384, 573, 959
TfiI GAWTC 2 cut(s) 486, 718
Tru1I TTAA 2 cut(s) 359, 714
Tru9I TTAA 2 cut(s) 359, 714
TscAI CASTG 1 cut(s) 933
TseFI GTSAC 3 cut(s) 542, 556, 936
TseI GCWGC 2 cut(s) 398, 509
Tsp45I GTSAC 3 cut(s) 542, 556, 936
TspDTI ATGAA 3 cut(s) 253, 308, 802
TspGWI ACGGA 1 cut(s) 996
TspRI CASTG 1 cut(s) 933
XapI RAATTY 2 cut(s) 168, 324
XmaJI CCTAGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 978
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.