Rroxscaffold_7G00218000

Folate-Biopterin Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011273
Physical Location & Seq
Reverse (-)
68657664 .. 68659491
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00218000.1

Sequence Viewer

Length: 1158 bp
ATGGTCGGAAAGCCCCTTTACGGTATCGTTTTCGACGCCATCTACATTGCTGGCCAGCACCGCATTCCTTATCTCGCCCTTGGCGCGTTCTTACAAGCAGTGTCATGGTTGGCTATAGCAATCCTCTCCCAATCAGGCATCTCAATTAGCGCTATGACCCTATATCTCCTCAGTAATTTGGGTGCTTCAATTGCTGAGGTTGCCAATGATGCCATTGTTGCAGAGGCAGGAAAACAGCCTGCTTCCTCCAAAAGTCCACAACCATCATCCTCGGGCGAGCTTCAGTCTTTTGTGTGGATGTCTTCAGCAGTGGGTGGAATCCTAGGATTTCTCCTAGGTGGTATTGCCATCGACAGATATGGTCCCCAAAAGATGTTCCTATTCTACGGCTTTCTCCTCGGTGTTCAGTTTTTCATTAGCATTCTTGTCAAGGAGAGCTCTATGAACCTTCCCAAGAGAAGATCTGATGTTGGAATTCGAGAGAAGCTTTCCGAGCTGTCAATTGCATTAAGAAAACCTGAGATCGCTTACTCAATTACATGGTTTGCAGCATTCTATGCCATCATTCCATCATTGACAGGCACGATGTTCTTTTACCAGACACAATATTTGAATATTGACTCATCGGTGTTGGGAATCTCAAAGGTGTTTGGCCAGGCGGCAATGCTTCTATGGAGTGTCATCTATAATCGTCACCTGAAACCAGTAACACCGAGGAAACTAATTTCAGCCATTCAAGTTACCATGGCTTTATTTATGATTTCTGATGCGTTGTTTGCAAATGGGTTTTACCGGAATATGGGGCTGTTAGACAATTTTTACATCGTAATATTTTCTGGCCTCTCAGAGGTTCTCTTGTTTATTAAGATTCTGCCCTTCAGCATTCTTGTAGCCAAGCTCTGCCCACCGGGATGCGAGGGATCTCTAATGGCATTTGTAATGTCTGCAATAGCAGTTGCGTTGATTATGAGCGGATATCTAGGTATTGCGCATGCTTCTTATGTTGGGATCACAGGAAATGATTTTTCAGGGCTTCCGCTTGCCTTCCTAATACAAGCATTTCTCACACTCTTGCCACTCTATTGGTCATCATGTATCCCTATCCTTGAATCGGAACCCGATCATGTAAAAGCAAAACCCAGTAGCAAGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

385

Amino Acids

41.83

Weight (kDa)

8.94

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 1 - 378 1.8e-93 BT1 family
MFS_1 PF07690 3 - 323 1.2e-10 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64890
fragaria_vesca FvH4_7g34292
malus_domestica MD07G1311100.v1.1
prunus_persica Prupe.2G330100_v2.0.a1
pyrus_communis pycom07g28340
rosa_chinensis RchiOBHm_Chr1g0384681
rosa_laevigata RLG00000026016
rosa_multiflora Rmu_sc0012136.1_g000022
rosa_roxburghii Rroxscaffold_4G00276470 Rroxscaffold_7G00218000
rosa_rugosa Rorug01G0450700 Rorug01G0450700 Rorug01G0450800
rosa_samantha Rh1AG475200 Rh1BG433400 Rh1CG446800 Rh1CG446900 Rh1DG465900 Rh6BG010000
rosa_wichuraiana Rw1G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 990
AccBSI CCGCTC 1 cut(s) 972
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 61, 659, 972, 1037
AclWI GGATC 2 cut(s) 928, 1016
AcoI YGGCCR 2 cut(s) 52, 652
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 3 cut(s) 266, 288, 862
AcyI GRCGYC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 4 cut(s) 20, 799, 847, 1111
AgsI TTSAA 4 cut(s) 189, 613, 737, 1109
AjnI CCWGG 1 cut(s) 654
AluBI AGCT 5 cut(s) 280, 438, 487, 496, 898
AluI AGCT 5 cut(s) 280, 438, 487, 496, 898
Alw21I GWGCWC 1 cut(s) 440
AlwI GGATC 2 cut(s) 928, 1016
Ama87I CYCGRG 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 3 cut(s) 52, 652, 838
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 592, 624
AspA2I CCTAGG 2 cut(s) 322, 334
AspLEI GCGC 3 cut(s) 86, 152, 991
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 1 cut(s) 362
AvrII CCTAGG 2 cut(s) 322, 334
BalI TGGCCA 2 cut(s) 54, 654
BanII GRGCYC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 440
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 1 cut(s) 560
BccI CCATC 5 cut(s) 47, 271, 356, 569, 577
BceAI ACGGC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 656
BciVI GTATCC 1 cut(s) 1106
BcnI CCSGG 1 cut(s) 909
BfaI CTAG 3 cut(s) 323, 335, 980
BfmI CTRYAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 1106
BglII AGATCT 1 cut(s) 461
BisI GCNGC 2 cut(s) 549, 660
BlnI CCTAGG 2 cut(s) 322, 334
BlsI GCNGC 2 cut(s) 550, 661
Bme1390I CCNGG 2 cut(s) 656, 909
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 364, 1116
BmrFI CCNGG 2 cut(s) 656, 909
BmrI ACTGGG 1 cut(s) 1134
BmsI GCATC 4 cut(s) 147, 199, 757, 902
BmuI ACTGGG 1 cut(s) 1134
BpiI GAAGAC 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 909
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 7 cut(s) 79, 270, 322, 334, 397, 713, 744
BsaWI WCCGGW 1 cut(s) 792
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 799, 847, 1111
Bse1I ACTGG 2 cut(s) 704, 1140
Bse3DI GCAATG 2 cut(s) 45, 669
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 7 cut(s) 79, 270, 322, 334, 397, 713, 744
BseGI GGATG 3 cut(s) 266, 303, 917
BseLI CCNNNNNNNGG 4 cut(s) 20, 799, 847, 1111
BseMI GCAATG 2 cut(s) 45, 669
BseMII CTCAG 4 cut(s) 184, 186, 510, 858
BseNI ACTGG 2 cut(s) 704, 1140
BseRI GAGGAG 2 cut(s) 158, 386
BseXI GCAGC 1 cut(s) 560
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 54, 654, 840
BsiHKAI GWGCWC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 793, 908
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 4 cut(s) 20, 799, 847, 1111
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 4 cut(s) 63, 420, 551, 882
BsnI GGCC 3 cut(s) 54, 654, 840
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 440
Bsp143I GATC 5 cut(s) 461, 522, 920, 1008, 1120
Bsp19I CCATGG 1 cut(s) 744
BspACI CCGC 4 cut(s) 61, 659, 972, 1037
BspANI GGCC 3 cut(s) 54, 654, 840
BspCNI CTCAG 4 cut(s) 183, 187, 511, 857
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 364, 1116
BspPI GGATC 2 cut(s) 928, 1016
BsrBI CCGCTC 1 cut(s) 972
BsrDI GCAATG 2 cut(s) 45, 669
BsrI ACTGG 2 cut(s) 704, 1140
BssECI CCNNGG 7 cut(s) 79, 270, 322, 334, 397, 713, 744
BssMI GATC 5 cut(s) 461, 522, 920, 1008, 1120
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 79, 322, 334, 744
Bst2UI CCWGG 1 cut(s) 656
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 557
BstC8I GCNNGC 6 cut(s) 52, 56, 240, 278, 993, 1041
BstDEI CTNAG 4 cut(s) 170, 195, 519, 844
BstDSI CCRYGG 1 cut(s) 744
BstENI CCTNNNNNAGG 1 cut(s) 845
BstF5I GGATG 3 cut(s) 266, 303, 917
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 86, 152, 991
BstKTI GATC 5 cut(s) 464, 525, 923, 1011, 1123
BstMBI GATC 5 cut(s) 461, 522, 920, 1008, 1120
BstMWI GCNNNNNNNGC 9 cut(s) 60, 83, 191, 200, 209, 218, 493, 557, 776
BstNI CCWGG 1 cut(s) 656
BstNSI RCATGY 1 cut(s) 995
BstSCI CCNGG 2 cut(s) 654, 907
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 560
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 461, 920
BstXI CCANNNNNNTGG 1 cut(s) 1083
BstYI RGATCY 2 cut(s) 461, 920
BsuI GTATCC 1 cut(s) 1106
BsuRI GGCC 3 cut(s) 54, 654, 840
BtgI CCRYGG 1 cut(s) 744
BtsCI GGATG 3 cut(s) 266, 303, 917
BtsI GCAGTG 2 cut(s) 105, 315
BtsIMutI CAGTG 2 cut(s) 105, 315
Cac8I GCNNGC 6 cut(s) 52, 56, 240, 278, 993, 1041
CfoI GCGC 3 cut(s) 86, 152, 991
Cfr13I GGNCC 1 cut(s) 362
CseI GACGC 1 cut(s) 44
CviAII CATG 6 cut(s) 105, 540, 745, 992, 1092, 1124
DdeI CTNAG 4 cut(s) 170, 195, 519, 844
DpnI GATC 5 cut(s) 463, 524, 922, 1010, 1122
DpnII GATC 5 cut(s) 461, 522, 920, 1008, 1120
EaeI YGGCCR 2 cut(s) 52, 652
Ecl136II GAGCTC 1 cut(s) 438
Eco130I CCWWGG 4 cut(s) 79, 322, 334, 744
Eco24I GRGCYC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 977
Eco47I GGWCC 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 438
Eco57I CTGAAG 3 cut(s) 266, 288, 862
Eco88I CYCGRG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 438
EcoNI CCTNNNNNAGG 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 1 cut(s) 654
EcoRV GATATC 1 cut(s) 977
EcoT14I CCWWGG 4 cut(s) 79, 322, 334, 744
EcoT38I GRGCYC 1 cut(s) 440
ErhI CCWWGG 4 cut(s) 79, 322, 334, 744
FaeI CATG 6 cut(s) 108, 543, 748, 995, 1095, 1127
FaqI GGGAC 1 cut(s) 348
FatI CATG 6 cut(s) 104, 539, 744, 991, 1091, 1123
Fnu4HI GCNGC 2 cut(s) 549, 660
FokI GGATG 3 cut(s) 253, 310, 924
FriOI GRGCYC 1 cut(s) 440
Fsp4HI GCNGC 2 cut(s) 549, 660
FspBI CTAG 3 cut(s) 323, 335, 980
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 3 cut(s) 85, 151, 990
GluI GCNGC 2 cut(s) 549, 660
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 3 cut(s) 54, 654, 840
HapII CCGG 2 cut(s) 793, 908
HgaI GACGC 1 cut(s) 44
HhaI GCGC 3 cut(s) 86, 152, 991
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 6 cut(s) 108, 543, 748, 995, 1095, 1127
Hin6I GCGC 3 cut(s) 84, 150, 989
HinP1I GCGC 3 cut(s) 84, 150, 989
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 5 cut(s) 318, 620, 636, 868, 1109
HpaII CCGG 2 cut(s) 793, 908
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 257
Hpy188I TCNGA 6 cut(s) 8, 466, 493, 766, 847, 1114
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 1 cut(s) 257
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 458, 886, 1054, 1144
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 221, 506, 548, 779, 947
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 83, 191, 200, 209, 218, 493, 557, 776
HpyF3I CTNAG 4 cut(s) 170, 195, 519, 844
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 6 cut(s) 108, 543, 748, 995, 1095, 1127
HspAI GCGC 3 cut(s) 84, 150, 989
Kzo9I GATC 5 cut(s) 461, 522, 920, 1008, 1120
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 4 cut(s) 147, 199, 757, 902
MaeI CTAG 3 cut(s) 323, 335, 980
MaeIII GTNAC 3 cut(s) 692, 706, 739
MalI GATC 5 cut(s) 463, 524, 922, 1010, 1122
MbiI CCGCTC 1 cut(s) 972
MboI GATC 5 cut(s) 461, 522, 920, 1008, 1120
MboII GAAGA 2 cut(s) 294, 471
MfeI CAATTG 2 cut(s) 189, 501
MflI RGATCY 2 cut(s) 461, 920
MhlI GDGCHC 1 cut(s) 440
MlsI TGGCCA 2 cut(s) 54, 654
MluCI AATT 8 cut(s) 144, 175, 189, 474, 501, 534, 723, 814
MluNI TGGCCA 2 cut(s) 54, 654
MlyI GAGTC 1 cut(s) 614
MmeI TCCRAC 1 cut(s) 451
Mox20I TGGCCA 2 cut(s) 54, 654
MscI TGGCCA 2 cut(s) 54, 654
MseI TTAA 2 cut(s) 509, 864
MslI CAYNNNNRTG 1 cut(s) 910
Msp20I TGGCCA 2 cut(s) 54, 654
MspI CCGG 2 cut(s) 793, 908
MspR9I CCNGG 2 cut(s) 656, 909
MunI CAATTG 2 cut(s) 189, 501
Mva1269I GAATGC 4 cut(s) 63, 420, 551, 882
MvaI CCWGG 1 cut(s) 656
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 9 cut(s) 60, 83, 191, 200, 209, 218, 493, 557, 776
NciI CCSGG 1 cut(s) 909
NcoI CCATGG 1 cut(s) 744
NdeII GATC 5 cut(s) 461, 522, 920, 1008, 1120
NlaIII CATG 6 cut(s) 108, 543, 748, 995, 1095, 1127
NlaIV GGNNCC 2 cut(s) 364, 1116
NmuCI GTSAC 1 cut(s) 692
NsbI TGCGCA 1 cut(s) 990
NspI RCATGY 1 cut(s) 995
PaeI GCATGC 1 cut(s) 995
PctI GAATGC 4 cut(s) 63, 420, 551, 882
PfeI GAWTC 4 cut(s) 318, 636, 868, 1109
PkrI GCNGC 2 cut(s) 550, 661
PleI GAGTC 1 cut(s) 614
PpsI GAGTC 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 364, 1116
PspPI GGNCC 1 cut(s) 362
PsuI RGATCY 2 cut(s) 461, 920
RseI CAYNNNNRTG 1 cut(s) 910
SacI GAGCTC 1 cut(s) 440
SaqAI TTAA 2 cut(s) 509, 864
SatI GCNGC 2 cut(s) 549, 660
Sau3AI GATC 5 cut(s) 461, 522, 920, 1008, 1120
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 2 cut(s) 656, 909
SduI GDGCHC 1 cut(s) 440
SfaNI GCATC 4 cut(s) 147, 199, 757, 902
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 910
SphI GCATGC 1 cut(s) 995
Sse9I AATT 8 cut(s) 144, 175, 189, 474, 501, 534, 723, 814
SsiI CCGC 4 cut(s) 61, 659, 972, 1037
SspI AATATT 3 cut(s) 608, 616, 831
SspMI CTAG 3 cut(s) 323, 335, 980
SstI GAGCTC 1 cut(s) 440
StyD4I CCNGG 2 cut(s) 654, 907
StyI CCWWGG 4 cut(s) 79, 322, 334, 744
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 3 cut(s) 33, 351, 478
TasI AATT 8 cut(s) 144, 175, 189, 474, 501, 534, 723, 814
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 4 cut(s) 318, 636, 868, 1109
Tru1I TTAA 2 cut(s) 509, 864
Tru9I TTAA 2 cut(s) 509, 864
TscAI CASTG 2 cut(s) 105, 315
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 2 cut(s) 403, 458
TspRI CASTG 2 cut(s) 105, 315
VpaK11BI GGWCC 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 845
XapI RAATTY 1 cut(s) 474
XceI RCATGY 1 cut(s) 995
XmaJI CCTAGG 2 cut(s) 322, 334
XspI CTAG 3 cut(s) 323, 335, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.