Rorug01G0450700

Folate-Biopterin Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011273
Physical Location & Seq
Reverse (-)
54605581 .. 54608883
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0450700.1

Sequence Viewer

Length: 975 bp
ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTTACCCGGACTCGGGCCATTCGCGTCTGTCGCCACGGCGGCGACCACCACGGCGTCGACGACGTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATCGGGTCGAAGACAGTTATACAGATACGTAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAACATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGGGTTCATCCAAAGACCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGCAGTCCCTTCTTGGCCTAATACTTCTGTGCAAACAGCCAACCTATCACATGAGACCAAAGGGCCAGCTAAGCCGAGCTGCAATAGTGCAGAAAGCACTCCAAAAGCTCAACCAGCCAGTGAAACAACTGATCAAGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACAGCTTCATTGGCGGTGTCTTTGACCCTAATACTTCAGGGCATCTGCAGAAACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCTACAAGATTGATGCCGATACAACAGATCACCTTGATGCAAGTAAAAACCTTCATAGCGACCAACAAAAGAATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

324

Amino Acids

35.48

Weight (kDa)

8.79

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 62 - 107 1.4e-10 Myb-like DNA-binding domain
RVE6 PF24904 237 - 299 1.2e-37 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64890
fragaria_vesca FvH4_7g34292
malus_domestica MD07G1311100.v1.1
prunus_persica Prupe.2G330100_v2.0.a1
pyrus_communis pycom07g28340
rosa_chinensis RchiOBHm_Chr1g0384681
rosa_laevigata RLG00000026016
rosa_multiflora Rmu_sc0012136.1_g000022
rosa_roxburghii Rroxscaffold_4G00276470 Rroxscaffold_7G00218000
rosa_rugosa Rorug01G0450700 Rorug01G0450700 Rorug01G0450800
rosa_samantha Rh1AG475200 Rh1BG433400 Rh1CG446800 Rh1CG446900 Rh1DG465900 Rh6BG010000
rosa_wichuraiana Rw1G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 124, 127
AatII GACGTC 1 cut(s) 125
AccI GTMKAC 2 cut(s) 116, 729
AccII CGCG 1 cut(s) 83
AciI CCGC 4 cut(s) 23, 98, 134, 744
AclWI GGATC 4 cut(s) 38, 51, 147, 879
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 4 cut(s) 215, 344, 750, 806
AcyI GRCGYC 2 cut(s) 113, 122
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 527
AgsI TTSAA 3 cut(s) 263, 473, 812
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 9 cut(s) 192, 227, 235, 266, 383, 602, 612, 641, 735
AluI AGCT 9 cut(s) 192, 227, 235, 266, 383, 602, 612, 641, 735
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 4 cut(s) 38, 51, 147, 879
AlwNI CAGNNNCTG 1 cut(s) 784
Ama87I CYCGRG 2 cut(s) 71, 203
AoxI GGCC 5 cut(s) 31, 74, 368, 548, 596
ApeKI GCWGC 2 cut(s) 612, 678
ApoI RAATTY 1 cut(s) 847
Asp700I GAANNNNTTC 2 cut(s) 228, 317
AspA2I CCTAGG 1 cut(s) 365
AspS9I GGNCC 3 cut(s) 74, 596, 796
AsuC2I CCSGG 2 cut(s) 66, 245
AsuHPI GGTGA 2 cut(s) 380, 914
AvaI CYCGRG 2 cut(s) 71, 203
AvaII GGWCC 1 cut(s) 796
AvrII CCTAGG 1 cut(s) 365
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 599, 690
BccI CCATC 2 cut(s) 702, 787
BceAI ACGGC 3 cut(s) 46, 111, 126
BciT130I CCWGG 1 cut(s) 528
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 2 cut(s) 66, 245
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 776, 801
BfuI GTATCC 1 cut(s) 16
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 3 cut(s) 99, 613, 679
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 3 cut(s) 100, 614, 680
Bme1390I CCNGG 3 cut(s) 66, 245, 528
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 2 cut(s) 71, 203
BmgT120I GGNCC 3 cut(s) 74, 596, 796
BmiI GGNNCC 2 cut(s) 45, 798
BmrFI CCNGG 3 cut(s) 66, 245, 528
BmsI GCATC 3 cut(s) 781, 895, 919
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 66, 245
BsaAI YACGTR 1 cut(s) 299
BsaHI GRCGYC 2 cut(s) 113, 122
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 3 cut(s) 93, 108, 365
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 527
Bse1I ACTGG 1 cut(s) 651
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 93, 108, 365
BseGI GGATG 3 cut(s) 483, 694, 890
BseLI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 527
BseMII CTCAG 3 cut(s) 134, 189, 413
BseNI ACTGG 1 cut(s) 651
BseXI GCAGC 2 cut(s) 599, 690
BsgI GTGCAG 2 cut(s) 555, 642
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 5 cut(s) 33, 76, 370, 550, 598
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 2 cut(s) 71, 203
BsiSI CCGG 2 cut(s) 66, 244
BslFI GGGAC 4 cut(s) 355, 504, 524, 843
BslI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 527
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 4 cut(s) 355, 504, 524, 843
BsnI GGCC 5 cut(s) 33, 76, 370, 550, 598
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 2 cut(s) 71, 203
Bsp1286I GDGCHC 2 cut(s) 204, 210
Bsp143I GATC 5 cut(s) 43, 139, 664, 871, 919
Bsp1720I GCTNAGC 1 cut(s) 603
BspACI CCGC 4 cut(s) 23, 98, 134, 744
BspANI GGCC 5 cut(s) 33, 76, 370, 550, 598
BspCNI CTCAG 3 cut(s) 135, 190, 412
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 45, 798
BspMAI CTGCAG 1 cut(s) 780
BspPI GGATC 4 cut(s) 38, 51, 147, 879
BspQI GCTCTTC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 581
BsrI ACTGG 1 cut(s) 651
BssECI CCNNGG 3 cut(s) 93, 108, 365
BssMI GATC 5 cut(s) 43, 139, 664, 871, 919
BssNAI GTATAC 1 cut(s) 730
BssNI GRCGYC 2 cut(s) 113, 122
BssT1I CCWWGG 1 cut(s) 365
Bst1107I GTATAC 1 cut(s) 730
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 3 cut(s) 286, 817, 825
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 2 cut(s) 113, 122
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 423, 600
BstDEI CTNAG 4 cut(s) 143, 198, 399, 603
BstDSI CCRYGG 2 cut(s) 93, 108
BstF5I GGATG 3 cut(s) 483, 694, 890
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 5 cut(s) 46, 142, 667, 874, 922
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 5 cut(s) 43, 139, 664, 871, 919
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 604, 647, 741
BstNI CCWGG 1 cut(s) 528
BstPAI GACNNNNGTC 1 cut(s) 720
BstSCI CCNGG 3 cut(s) 64, 243, 526
BstSFI CTRYAG 2 cut(s) 776, 801
BstSNI TACGTA 1 cut(s) 299
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 599, 690
BstV2I GAAGAC 1 cut(s) 287
BstX2I RGATCY 2 cut(s) 43, 139
BstYI RGATCY 2 cut(s) 43, 139
BstZ17I GTATAC 1 cut(s) 730
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 5 cut(s) 33, 76, 370, 550, 598
BtgI CCRYGG 2 cut(s) 93, 108
BtsCI GGATG 3 cut(s) 483, 694, 890
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 423, 600
CaiI CAGNNNCTG 1 cut(s) 784
Cfr13I GGNCC 3 cut(s) 74, 596, 796
CseI GACGC 2 cut(s) 72, 102
Csp6I GTAC 1 cut(s) 37
CviAII CATG 4 cut(s) 305, 447, 584, 844
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 4 cut(s) 143, 198, 399, 603
DpnI GATC 5 cut(s) 45, 141, 666, 873, 921
DpnII GATC 5 cut(s) 43, 139, 664, 871, 919
DrdI GACNNNNNNGTC 2 cut(s) 124, 127
DseDI GACNNNNNNGTC 2 cut(s) 124, 127
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
EciI GGCGGA 2 cut(s) 12, 149
Eco105I TACGTA 1 cut(s) 299
Eco130I CCWWGG 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 4 cut(s) 215, 344, 750, 806
Eco88I CYCGRG 2 cut(s) 71, 203
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 365
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 365
FaeI CATG 4 cut(s) 308, 450, 587, 847
FalI AAGNNNNNCTT 2 cut(s) 367, 399
FaqI GGGAC 4 cut(s) 355, 504, 524, 843
FatI CATG 4 cut(s) 304, 446, 583, 843
FbaI TGATCA 1 cut(s) 664
FblI GTMKAC 2 cut(s) 116, 729
Fnu4HI GCNGC 3 cut(s) 99, 613, 679
FokI GGATG 3 cut(s) 470, 681, 877
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 3 cut(s) 99, 613, 679
FspBI CTAG 1 cut(s) 366
GluI GCNGC 3 cut(s) 99, 613, 679
HaeIII GGCC 5 cut(s) 33, 76, 370, 550, 598
HapII CCGG 2 cut(s) 66, 244
HgaI GACGC 2 cut(s) 72, 102
Hin1I GRCGYC 2 cut(s) 113, 122
Hin1II CATG 4 cut(s) 308, 450, 587, 847
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HindIII AAGCTT 2 cut(s) 264, 381
HinfI GANTC 6 cut(s) 19, 69, 154, 473, 497, 673
HpaII CCGG 2 cut(s) 66, 244
HphI GGTGA 2 cut(s) 380, 914
Hpy166II GTNNAC 2 cut(s) 117, 730
Hpy188I TCNGA 5 cut(s) 48, 144, 159, 333, 402
Hpy188III TCNNGA 3 cut(s) 183, 322, 860
Hpy8I GTNNAC 2 cut(s) 117, 730
Hpy99I CGWCG 7 cut(s) 32, 118, 121, 124, 127, 130, 133
HpyAV CCTTC 3 cut(s) 319, 552, 953
HpyCH4III ACNGT 3 cut(s) 286, 817, 825
HpyCH4IV ACGT 2 cut(s) 122, 298
HpyCH4V TGCA 7 cut(s) 308, 536, 565, 615, 623, 778, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 604, 647, 741
HpyF3I CTNAG 4 cut(s) 143, 198, 399, 603
HpySE526I ACGT 2 cut(s) 122, 298
Hsp92I GRCGYC 2 cut(s) 113, 122
Hsp92II CATG 4 cut(s) 308, 450, 587, 847
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 5 cut(s) 43, 139, 664, 871, 919
LguI GCTCTTC 1 cut(s) 234
Lsp1109I GCAGC 2 cut(s) 599, 690
LweI GCATC 3 cut(s) 781, 895, 919
MaeI CTAG 1 cut(s) 366
MaeII ACGT 2 cut(s) 122, 298
MaeIII GTNAC 3 cut(s) 60, 465, 819
MalI GATC 5 cut(s) 45, 141, 666, 873, 921
MboI GATC 5 cut(s) 43, 139, 664, 871, 919
MboII GAAGA 9 cut(s) 163, 221, 265, 268, 292, 346, 447, 799, 802
MflI RGATCY 2 cut(s) 43, 139
MhlI GDGCHC 2 cut(s) 204, 210
MluCI AATT 1 cut(s) 847
MlyI GAGTC 2 cut(s) 13, 63
MnlI CCTC 6 cut(s) 130, 230, 369, 408, 418, 862
MroXI GAANNNNTTC 2 cut(s) 228, 317
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 1 cut(s) 927
MspI CCGG 2 cut(s) 66, 244
MspR9I CCNGG 3 cut(s) 66, 245, 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 604, 647, 741
NciI CCSGG 2 cut(s) 66, 245
NdeII GATC 5 cut(s) 43, 139, 664, 871, 919
NlaIII CATG 4 cut(s) 308, 450, 587, 847
NlaIV GGNNCC 2 cut(s) 45, 798
NmeAIII GCCGAG 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 3 cut(s) 116, 122, 125
PdmI GAANNNNTTC 2 cut(s) 228, 317
PfeI GAWTC 4 cut(s) 154, 473, 497, 673
PflFI GACNNNGTC 2 cut(s) 121, 124
PkrI GCNGC 3 cut(s) 100, 614, 680
PleI GAGTC 2 cut(s) 13, 63
PpsI GAGTC 2 cut(s) 13, 63
Ppu21I YACGTR 1 cut(s) 299
PshAI GACNNNNGTC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 45, 798
PspPI GGNCC 3 cut(s) 74, 596, 796
PstI CTGCAG 1 cut(s) 780
PstNI CAGNNNCTG 1 cut(s) 784
PsuI RGATCY 2 cut(s) 43, 139
PsyI GACNNNGTC 2 cut(s) 121, 124
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 927
SalI GTCGAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 684
SatI GCNGC 3 cut(s) 99, 613, 679
Sau3AI GATC 5 cut(s) 43, 139, 664, 871, 919
Sau96I GGNCC 3 cut(s) 74, 596, 796
SchI GAGTC 2 cut(s) 13, 63
ScrFI CCNGG 3 cut(s) 66, 245, 528
SduI GDGCHC 2 cut(s) 204, 210
SfaNI GCATC 3 cut(s) 781, 895, 919
SfcI CTRYAG 2 cut(s) 776, 801
SgrDI CGTCGACG 1 cut(s) 115
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 1 cut(s) 927
SnaBI TACGTA 1 cut(s) 299
Sse9I AATT 1 cut(s) 847
SsiI CCGC 4 cut(s) 23, 98, 134, 744
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 3 cut(s) 64, 243, 526
StyI CCWWGG 1 cut(s) 365
TaaI ACNGT 3 cut(s) 286, 817, 825
TaiI ACGT 2 cut(s) 125, 301
TaqI TCGA 3 cut(s) 116, 222, 278
TasI AATT 1 cut(s) 847
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 4 cut(s) 154, 473, 497, 673
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 658
TseI GCWGC 2 cut(s) 612, 678
TspDTI ATGAA 8 cut(s) 435, 447, 472, 489, 727, 860, 879, 935
TspRI CASTG 1 cut(s) 658
Tth111I GACNNNGTC 2 cut(s) 121, 124
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 1 cut(s) 847
XmaJI CCTAGG 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 116, 729
XmnI GAANNNNTTC 2 cut(s) 228, 317
XspI CTAG 1 cut(s) 366
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.