Rh6BG010000

Folate-Biopterin Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011273
Physical Location & Seq
Reverse (-)
1561089 .. 1562920
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG010000.1

Sequence Viewer

Length: 1161 bp
ATGGTTGGAAAGCCCCTTTACGGTATCGTTTCCGACGCCATCTACATTGCTGGCCAGCACCGCATTCCTTATCTCGCCCTTGGCGCGTTCTTACAAGCAGTGTCATGGTTGGCTATAGCAATCCTCTCCCAATCAGGCATCTCAATTAGCGCTATGACCCTATATCTCCTCCTCAGTAATTTGGGTGCTTCAATTGCTGAGGTTGCCAATGATGCCATTGTTGCAGAGGCAGGAAAACAGCCTGCTTCCTCCAAAAGTCCACAACCATCATCCTCGGGCGAGCTTCAGTCTTTTGTGTGGATGTCTTCAGCAGTGGGTGGAATCCTAGGATTTCTCCTAGGTGGTATTGCCATCGACAGATATGGTCCCCAAAAGATGTTCCTGTTCTACGGCTTTCTCCTCGGTGTTCAGTTTTTCATTAGCATTCTTGTCAAGGAGAGCTCTATGAACCTTCCCAAGAGAAGATCTGATGTTGGAATTCGAGAGAAGCTTTCCGAGCTGTCAATTGCATTAAGAAAACCTGAGATTGCTTACTCAATTACATGGTTTGCAGCATTATATGCCATCATTCCATCATTGACAGGCACGATGTTCTTTTACCAGACACAATATTTGAATATTGACTCATCGGTGTTGGGAATCTCAAAGGTGTTTGGCCAGGCGGCAATGCTTCTATGGAGTGTCATCTATAATCGTCACCTGAAACCGGTAACACCGAGGAAACTAATTTCAGCCATTCAAGTTACCATGGCTTTATTTATGATTTCTGATGCGTTGTTTGCAAATGGGTTTTACCGGAATATGGGGCTGTCAGACAATTTTTACATCGTAATATTTTCTAGCCTCTCAGAGGTTCTCTTGTTTATTAAGATTCTGCCCTTCAGCATTCTTGTAGCCAAGCTCTGCCCACCGGGATGCGAGAGATCTCTAATGGCATTTGTAATGTCTGCAATAGCAGTTGCGTTGATTATGAGCGGATATCTAGGTATTGCGCTTGCTTCTTATGTTGGGATCACAGGAAATGATTTTTCAGGGCTTCCGCTTGCCTTCCTAATACAAGCATTTCTCACACTCTTGCCACTCTATTGGTCATCATGTATCCCTATCCTTGAATCGGAACCCGATCATGTAAAAGCAAAACCCAGTAGCAAGAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

386

Amino Acids

41.93

Weight (kDa)

9.06

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BT1 PF03092 1 - 379 2e-98 BT1 family
MFS_1 PF07690 2 - 321 4.4e-10 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64890
fragaria_vesca FvH4_7g34292
malus_domestica MD07G1311100.v1.1
prunus_persica Prupe.2G330100_v2.0.a1
pyrus_communis pycom07g28340
rosa_chinensis RchiOBHm_Chr1g0384681
rosa_laevigata RLG00000026016
rosa_multiflora Rmu_sc0012136.1_g000022
rosa_roxburghii Rroxscaffold_4G00276470 Rroxscaffold_7G00218000
rosa_rugosa Rorug01G0450700 Rorug01G0450700 Rorug01G0450800
rosa_samantha Rh1AG475200 Rh1BG433400 Rh1CG446800 Rh1CG446900 Rh1DG465900 Rh6BG010000
rosa_wichuraiana Rw1G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 975
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 61, 662, 975, 1040
AclWI GGATC 1 cut(s) 1019
AcoI YGGCCR 2 cut(s) 52, 655
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 3 cut(s) 269, 291, 865
AcyI GRCGYC 1 cut(s) 36
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 5 cut(s) 20, 706, 802, 850, 1114
AgeI ACCGGT 1 cut(s) 706
AgsI TTSAA 4 cut(s) 192, 616, 740, 1112
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 5 cut(s) 283, 441, 490, 499, 901
AluI AGCT 5 cut(s) 283, 441, 490, 499, 901
Alw21I GWGCWC 1 cut(s) 443
AlwI GGATC 1 cut(s) 1019
Ama87I CYCGRG 1 cut(s) 274
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 2 cut(s) 52, 655
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 477
ArsI GACNNNNNNTTYG 2 cut(s) 595, 627
AsiGI ACCGGT 1 cut(s) 706
AspA2I CCTAGG 2 cut(s) 325, 337
AspLEI GCGC 3 cut(s) 86, 152, 994
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 912
AsuHPI GGTGA 1 cut(s) 689
AvaI CYCGRG 1 cut(s) 274
AvaII GGWCC 1 cut(s) 365
AvrII CCTAGG 2 cut(s) 325, 337
BalI TGGCCA 2 cut(s) 54, 657
BanII GRGCYC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 443
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 563
BccI CCATC 5 cut(s) 47, 274, 359, 572, 580
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 659
BciVI GTATCC 1 cut(s) 1109
BcnI CCSGG 1 cut(s) 912
BfaI CTAG 4 cut(s) 326, 338, 840, 983
BfmI CTRYAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 153
BfuI GTATCC 1 cut(s) 1109
BglII AGATCT 2 cut(s) 464, 923
BisI GCNGC 2 cut(s) 552, 663
BlnI CCTAGG 2 cut(s) 325, 337
BlsI GCNGC 2 cut(s) 553, 664
Bme1390I CCNGG 2 cut(s) 659, 912
Bme18I GGWCC 1 cut(s) 365
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 367, 1119
BmrFI CCNGG 2 cut(s) 659, 912
BmrI ACTGGG 1 cut(s) 1137
BmsI GCATC 4 cut(s) 147, 202, 760, 905
BmuI ACTGGG 1 cut(s) 1137
BpiI GAAGAC 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 912
BsaHI GRCGYC 1 cut(s) 36
BsaJI CCNNGG 7 cut(s) 79, 273, 325, 337, 400, 716, 747
BsaWI WCCGGW 2 cut(s) 706, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 20, 706, 802, 850, 1114
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 1 cut(s) 1143
Bse3DI GCAATG 2 cut(s) 45, 672
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 7 cut(s) 79, 273, 325, 337, 400, 716, 747
BseGI GGATG 3 cut(s) 269, 306, 920
BseLI CCNNNNNNNGG 5 cut(s) 20, 706, 802, 850, 1114
BseMI GCAATG 2 cut(s) 45, 672
BseMII CTCAG 4 cut(s) 187, 189, 513, 861
BseNI ACTGG 1 cut(s) 1143
BseRI GAGGAG 3 cut(s) 158, 161, 389
BseXI GCAGC 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 2 cut(s) 54, 657
BshTI ACCGGT 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 3 cut(s) 707, 796, 911
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 5 cut(s) 20, 706, 802, 850, 1114
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 3 cut(s) 63, 423, 885
BsnI GGCC 2 cut(s) 54, 657
BsoBI CYCGRG 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 4 cut(s) 464, 923, 1011, 1123
Bsp19I CCATGG 1 cut(s) 747
BspACI CCGC 4 cut(s) 61, 662, 975, 1040
BspANI GGCC 2 cut(s) 54, 657
BspCNI CTCAG 4 cut(s) 186, 190, 514, 860
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 367, 1119
BspPI GGATC 1 cut(s) 1019
BsrBI CCGCTC 1 cut(s) 975
BsrDI GCAATG 2 cut(s) 45, 672
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 1 cut(s) 1143
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 7 cut(s) 79, 273, 325, 337, 400, 716, 747
BssMI GATC 4 cut(s) 464, 923, 1011, 1123
BssNI GRCGYC 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 79, 325, 337, 747
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 6 cut(s) 52, 56, 243, 281, 996, 1044
BstDEI CTNAG 4 cut(s) 173, 198, 522, 847
BstDSI CCRYGG 1 cut(s) 747
BstENI CCTNNNNNAGG 1 cut(s) 848
BstF5I GGATG 3 cut(s) 269, 306, 920
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 86, 152, 994
BstKTI GATC 4 cut(s) 467, 926, 1014, 1126
BstMBI GATC 4 cut(s) 464, 923, 1011, 1123
BstMWI GCNNNNNNNGC 9 cut(s) 60, 83, 194, 203, 212, 221, 496, 560, 779
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 657, 910
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 563
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 2 cut(s) 464, 923
BstXI CCANNNNNNTGG 1 cut(s) 1086
BstYI RGATCY 2 cut(s) 464, 923
BsuI GTATCC 1 cut(s) 1109
BsuRI GGCC 2 cut(s) 54, 657
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 3 cut(s) 269, 306, 920
BtsI GCAGTG 2 cut(s) 105, 318
BtsIMutI CAGTG 2 cut(s) 105, 318
Cac8I GCNNGC 6 cut(s) 52, 56, 243, 281, 996, 1044
CfoI GCGC 3 cut(s) 86, 152, 994
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 365
CseI GACGC 1 cut(s) 44
CspAI ACCGGT 1 cut(s) 706
CviAII CATG 5 cut(s) 105, 543, 748, 1095, 1127
DdeI CTNAG 4 cut(s) 173, 198, 522, 847
DpnI GATC 4 cut(s) 466, 925, 1013, 1125
DpnII GATC 4 cut(s) 464, 923, 1011, 1123
EaeI YGGCCR 2 cut(s) 52, 655
Ecl136II GAGCTC 1 cut(s) 441
Eco130I CCWWGG 4 cut(s) 79, 325, 337, 747
Eco24I GRGCYC 1 cut(s) 443
Eco32I GATATC 1 cut(s) 980
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 3 cut(s) 269, 291, 865
Eco88I CYCGRG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 441
EcoNI CCTNNNNNAGG 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 477
EcoRII CCWGG 1 cut(s) 657
EcoRV GATATC 1 cut(s) 980
EcoT14I CCWWGG 4 cut(s) 79, 325, 337, 747
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 4 cut(s) 79, 325, 337, 747
FaeI CATG 5 cut(s) 108, 546, 751, 1098, 1130
FaqI GGGAC 1 cut(s) 351
FatI CATG 5 cut(s) 104, 542, 747, 1094, 1126
Fnu4HI GCNGC 2 cut(s) 552, 663
FokI GGATG 3 cut(s) 256, 313, 927
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 552, 663
FspBI CTAG 4 cut(s) 326, 338, 840, 983
GlaI GCGC 3 cut(s) 85, 151, 993
GluI GCNGC 2 cut(s) 552, 663
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 2 cut(s) 54, 657
HapII CCGG 3 cut(s) 707, 796, 911
HgaI GACGC 1 cut(s) 44
HhaI GCGC 3 cut(s) 86, 152, 994
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 5 cut(s) 108, 546, 751, 1098, 1130
Hin6I GCGC 3 cut(s) 84, 150, 992
HinP1I GCGC 3 cut(s) 84, 150, 992
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 5 cut(s) 321, 623, 639, 871, 1112
HpaII CCGG 3 cut(s) 707, 796, 911
HphI GGTGA 1 cut(s) 689
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 7 cut(s) 34, 469, 496, 769, 814, 850, 1117
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 4 cut(s) 461, 889, 1057, 1147
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4V TGCA 5 cut(s) 224, 509, 551, 782, 950
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 83, 194, 203, 212, 221, 496, 560, 779
HpyF3I CTNAG 4 cut(s) 173, 198, 522, 847
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 5 cut(s) 108, 546, 751, 1098, 1130
HspAI GCGC 3 cut(s) 84, 150, 992
Kzo9I GATC 4 cut(s) 464, 923, 1011, 1123
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 4 cut(s) 147, 202, 760, 905
MaeI CTAG 4 cut(s) 326, 338, 840, 983
MaeIII GTNAC 3 cut(s) 695, 709, 742
MalI GATC 4 cut(s) 466, 925, 1013, 1125
MbiI CCGCTC 1 cut(s) 975
MboI GATC 4 cut(s) 464, 923, 1011, 1123
MboII GAAGA 2 cut(s) 297, 474
MfeI CAATTG 2 cut(s) 192, 504
MflI RGATCY 2 cut(s) 464, 923
MhlI GDGCHC 1 cut(s) 443
MlsI TGGCCA 2 cut(s) 54, 657
MluCI AATT 8 cut(s) 144, 178, 192, 477, 504, 537, 726, 817
MluNI TGGCCA 2 cut(s) 54, 657
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 2 cut(s) 57, 454
Mox20I TGGCCA 2 cut(s) 54, 657
MscI TGGCCA 2 cut(s) 54, 657
MseI TTAA 2 cut(s) 512, 867
MslI CAYNNNNRTG 1 cut(s) 913
Msp20I TGGCCA 2 cut(s) 54, 657
MspI CCGG 3 cut(s) 707, 796, 911
MspR9I CCNGG 2 cut(s) 659, 912
MunI CAATTG 2 cut(s) 192, 504
Mva1269I GAATGC 3 cut(s) 63, 423, 885
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 9 cut(s) 60, 83, 194, 203, 212, 221, 496, 560, 779
NciI CCSGG 1 cut(s) 912
NcoI CCATGG 1 cut(s) 747
NdeII GATC 4 cut(s) 464, 923, 1011, 1123
NlaIII CATG 5 cut(s) 108, 546, 751, 1098, 1130
NlaIV GGNNCC 2 cut(s) 367, 1119
NmuCI GTSAC 1 cut(s) 695
PctI GAATGC 3 cut(s) 63, 423, 885
PfeI GAWTC 4 cut(s) 321, 639, 871, 1112
PinAI ACCGGT 1 cut(s) 706
PkrI GCNGC 2 cut(s) 553, 664
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 2 cut(s) 367, 1119
PspPI GGNCC 1 cut(s) 365
PsuI RGATCY 2 cut(s) 464, 923
RseI CAYNNNNRTG 1 cut(s) 913
SacI GAGCTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 512, 867
SatI GCNGC 2 cut(s) 552, 663
Sau3AI GATC 4 cut(s) 464, 923, 1011, 1123
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 2 cut(s) 659, 912
SduI GDGCHC 1 cut(s) 443
SfaNI GCATC 4 cut(s) 147, 202, 760, 905
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 913
Sse9I AATT 8 cut(s) 144, 178, 192, 477, 504, 537, 726, 817
SsiI CCGC 4 cut(s) 61, 662, 975, 1040
SspI AATATT 3 cut(s) 611, 619, 834
SspMI CTAG 4 cut(s) 326, 338, 840, 983
SstI GAGCTC 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 657, 910
StyI CCWWGG 4 cut(s) 79, 325, 337, 747
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 2 cut(s) 354, 481
TasI AATT 8 cut(s) 144, 178, 192, 477, 504, 537, 726, 817
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 4 cut(s) 321, 639, 871, 1112
Tru1I TTAA 2 cut(s) 512, 867
Tru9I TTAA 2 cut(s) 512, 867
TscAI CASTG 2 cut(s) 105, 318
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 2 cut(s) 406, 461
TspRI CASTG 2 cut(s) 105, 318
VpaK11BI GGWCC 1 cut(s) 365
XagI CCTNNNNNAGG 1 cut(s) 848
XapI RAATTY 1 cut(s) 477
XmaJI CCTAGG 2 cut(s) 325, 337
XspI CTAG 4 cut(s) 326, 338, 840, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.