Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012662

Physical Location & Seq

Genomic Coordinates Reverse (-)

6182552 .. 6183003

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1035300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGCAGGGATATGCATACGTTCTTACTCATCCGGGAATCCCCTCAATTTTTTACGCCCACTTCTTCGATTGGGGCATGAAAGAGGAGATCAGTAAACTCGTTGCAATCAGGTTAAGGAACCGGATCAGACGTGACAGTGTCCTGCGTATTCTAGCTTCTGCTGCAGATCTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

59

Amino Acids

6.74

Weight (kDa)

9.81

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012662)

Species	Orthologous Gene IDs
malus_domestica	MD00G1035300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0359701 RchiOBHm_Chr2g0130321 RchiOBHm_Chr5g0052021 RchiOBHm_Chr5g0055831
rosa_laevigata	RLG00000018153 RLG00000028115
rosa_multiflora	Rmu_sc0000333.1_g000021 Rmu_sc0002587.1_g000019 Rmu_sc0010783.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029830
rosa_rugosa	Rorug02G0114300 Rorug02G0114400 Rorug02G0114500
rosa_samantha	Rh2AG072100 Rh2AG414200 Rh2CG400600 Rh6CG197900
rosa_wichuraiana	Rw2G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	139, 171
BbvI	GCAGC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	33
BfaI	CTAG	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	120
BseGI	GGATG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	32, 121
Bsp143I	GATC	3 cut(s)	87, 123, 166
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	131
BssMI	GATC	3 cut(s)	87, 123, 166
Bst4CI	ACNGT	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	90, 126, 169
BstMBI	GATC	3 cut(s)	87, 123, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	142
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	1 cut(s)	155
CviKI_1	RGCY	1 cut(s)	155
DpnI	GATC	3 cut(s)	89, 125, 168
DpnII	GATC	3 cut(s)	87, 123, 166
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	12, 16, 77, 173
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	162
HapII	CCGG	2 cut(s)	32, 121
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	32, 121
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4IV	ACGT	2 cut(s)	18, 130
HpyCH4V	TGCA	4 cut(s)	4, 14, 104, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	18, 130
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	87, 123, 166
LpnPI	CCDG	4 cut(s)	45, 94, 134, 155
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	2 cut(s)	18, 130
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	89, 125, 168
MboI	GATC	3 cut(s)	87, 123, 166
MboII	GAAGA	1 cut(s)	55
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	45
MnlI	CCTC	2 cut(s)	52, 76
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	1 cut(s)	113
MspI	CCGG	2 cut(s)	32, 121
MspR9I	CCNGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	87, 123, 166
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	87, 123, 166
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	4 cut(s)	21, 113, 133, 157
SfcI	CTRYAG	1 cut(s)	162
Sse9I	AATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	137
TaiI	ACGT	2 cut(s)	21, 133
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	137
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.