Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000333.1

Orthogroup ID

OG0012662

Physical Location & Seq

Genomic Coordinates Forward (+)

169480 .. 172736

Gene Structure 3257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000333.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgcccacgcgtactgcgttagagctgcaactgtcgtatacactccatcagcagaatccggtaggacataccgtacccattcatcttcctatgatcaatcaagtgtttagcagcaaccatgccgtgaagatatcactgaattccccagtggcaagactgaggccacttgcgggaaagcatatgcctggagaggttgttgttgttcgtgtccctatcctgcatctctcaaacttccaaatcaatgactggcctgagctctcaacaaaacgctatgctttgatggtgttgatgctccattctgatagtgcaaggcaatggcatgtgcatgagttagagctggttgaggcagttgctaaccagggttatgcatatatactcacacaccccagaataccttccgtcttctatgaccacttctatgattcgggtcatcctggtcctgatatgatgatccgtttactaaagactttgcacggacatccattctctagagagaaacgaagcatgaatcaaaagtggattcttggactaagcgtgaccgccgccgctgcctcatggggccgccgctgtccaccaccagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

194

Amino Acids

21.98

Weight (kDa)

9.72

Isoelectric Point (pI)

49.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012662)

Species	Orthologous Gene IDs
malus_domestica	MD00G1035300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0359701 RchiOBHm_Chr2g0130321 RchiOBHm_Chr5g0052021 RchiOBHm_Chr5g0055831
rosa_laevigata	RLG00000018153 RLG00000028115
rosa_multiflora	Rmu_sc0000333.1_g000021 Rmu_sc0002587.1_g000019 Rmu_sc0010783.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029830
rosa_rugosa	Rorug02G0114300 Rorug02G0114400 Rorug02G0114500
rosa_samantha	Rh2AG072100 Rh2AG414200 Rh2CG400600 Rh6CG197900
rosa_wichuraiana	Rw2G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	10
AciI	CCGC	6 cut(s)	170, 540, 543, 546, 562, 565
AclWI	GGATC	1 cut(s)	445
AcsI	RAATTY	1 cut(s)	139
AfaI	GTAC	2 cut(s)	13, 75
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	8
AjnI	CCWGG	3 cut(s)	184, 357, 433
AluBI	AGCT	3 cut(s)	25, 256, 337
AluI	AGCT	3 cut(s)	25, 256, 337
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	3 cut(s)	161, 248, 559
ApeKI	GCWGC	3 cut(s)	25, 111, 548
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	394
AspS9I	GGNCC	2 cut(s)	437, 559
AvaII	GGWCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	12, 123, 535
BccI	CCATC	2 cut(s)	54, 274
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	3 cut(s)	186, 359, 435
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	1 cut(s)	489
BisI	GCNGC	7 cut(s)	26, 112, 543, 546, 549, 562, 565
BlsI	GCNGC	7 cut(s)	27, 113, 544, 547, 550, 563, 566
Bme1390I	CCNGG	3 cut(s)	186, 359, 435
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	437, 559
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	3 cut(s)	186, 359, 435
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	2 cut(s)	229, 279
BmuI	ACTGGG	1 cut(s)	140
BpiI	GAAGAC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	146, 251
Bse3DI	GCAATG	1 cut(s)	320
BseBI	CCWGG	3 cut(s)	186, 359, 435
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	430, 478
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	149, 243
BseNI	ACTGG	2 cut(s)	146, 251
BseXI	GCAGC	3 cut(s)	12, 123, 535
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	163, 250, 561
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	163, 250, 561
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	93, 450
BspACI	CCGC	6 cut(s)	170, 540, 543, 546, 562, 565
BspANI	GGCC	3 cut(s)	163, 250, 561
BspCNI	CTCAG	2 cut(s)	150, 244
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	560
BspPI	GGATC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	146, 251
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	2 cut(s)	93, 450
BssNAI	GTATAC	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	186, 359, 435
Bst4CI	ACNGT	2 cut(s)	33, 73
BstDEI	CTNAG	3 cut(s)	158, 252, 530
BstF5I	GGATG	2 cut(s)	430, 478
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	96, 453
BstMBI	GATC	2 cut(s)	93, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	548
BstNI	CCWGG	3 cut(s)	186, 359, 435
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	184, 357, 433
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	12, 123, 535
BstV2I	GAAGAC	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	163, 250, 561
BtsCI	GGATG	2 cut(s)	430, 478
BtsIMutI	CAGTG	2 cut(s)	134, 153
Cfr13I	GGNCC	2 cut(s)	437, 559
Csp6I	GTAC	2 cut(s)	12, 74
CviAII	CATG	5 cut(s)	119, 320, 326, 505, 555
CviJI	RGCY	7 cut(s)	25, 163, 250, 256, 337, 561, 581
CviKI_1	RGCY	7 cut(s)	25, 163, 250, 256, 337, 561, 581
CviQI	GTAC	2 cut(s)	12, 74
DdeI	CTNAG	3 cut(s)	158, 252, 530
DpnI	GATC	2 cut(s)	95, 452
DpnII	GATC	2 cut(s)	93, 450
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	3 cut(s)	184, 357, 433
EcoRV	GATATC	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	5 cut(s)	122, 323, 329, 508, 558
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	118, 319, 325, 504, 554
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	7 cut(s)	26, 112, 543, 546, 549, 562, 565
FokI	GGATG	2 cut(s)	417, 465
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	7 cut(s)	26, 112, 543, 546, 549, 562, 565
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	7 cut(s)	26, 112, 543, 546, 549, 562, 565
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	163, 250, 561
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	5 cut(s)	122, 323, 329, 508, 558
HinfI	GANTC	4 cut(s)	55, 422, 508, 520
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	3 cut(s)	39, 458, 572
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	2 cut(s)	440, 489
Hpy8I	GTNNAC	3 cut(s)	39, 458, 572
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	2 cut(s)	33, 73
HpyCH4V	TGCA	6 cut(s)	28, 220, 308, 325, 368, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	548
HpyF3I	CTNAG	3 cut(s)	158, 252, 530
Hsp92II	CATG	5 cut(s)	122, 323, 329, 508, 558
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 450
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	3 cut(s)	12, 123, 535
LweI	GCATC	2 cut(s)	229, 279
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	2 cut(s)	95, 452
MboI	GATC	2 cut(s)	93, 450
MboII	GAAGA	3 cut(s)	77, 139, 394
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	139
MluI	ACGCGT	1 cut(s)	8
MnlI	CCTC	4 cut(s)	153, 184, 337, 562
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	394
MslI	CAYNNNNRTG	2 cut(s)	324, 417
MspA1I	CMGCKG	2 cut(s)	548, 567
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	3 cut(s)	186, 359, 435
MvaI	CCWGG	3 cut(s)	186, 359, 435
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	548
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	2 cut(s)	93, 450
NlaIII	CATG	5 cut(s)	122, 323, 329, 508, 558
NlaIV	GGNNCC	1 cut(s)	560
NmuCI	GTSAC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	55, 422, 508, 520
PkrI	GCNGC	7 cut(s)	27, 113, 544, 547, 550, 563, 566
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	184, 357, 433
PspGI	CCWGG	3 cut(s)	184, 357, 433
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	2 cut(s)	437, 559
RsaI	GTAC	2 cut(s)	13, 75
RsaNI	GTAC	2 cut(s)	12, 74
RseI	CAYNNNNRTG	2 cut(s)	324, 417
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	7 cut(s)	26, 112, 543, 546, 549, 562, 565
Sau3AI	GATC	2 cut(s)	93, 450
Sau96I	GGNCC	2 cut(s)	437, 559
ScrFI	CCNGG	3 cut(s)	186, 359, 435
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	5 cut(s)	27, 195, 258, 339, 397
SfaNI	GCATC	2 cut(s)	229, 279
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	324, 417
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	6 cut(s)	170, 540, 543, 546, 562, 565
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	184, 357, 433
TaaI	ACNGT	2 cut(s)	33, 73
TasI	AATT	1 cut(s)	139
TauI	GCSGC	4 cut(s)	545, 548, 564, 567
TfiI	GAWTC	4 cut(s)	55, 422, 508, 520
TscAI	CASTG	2 cut(s)	141, 153
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	3 cut(s)	25, 111, 548
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	2 cut(s)	71, 521
TspGWI	ACGGA	3 cut(s)	388, 443, 489
TspRI	CASTG	2 cut(s)	141, 153
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	394
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.