Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012662

Physical Location & Seq

Genomic Coordinates Forward (+)

32938996 .. 33007753

Gene Structure 68758 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAGTTGCGCTAAATGGCTTCCCCATTGGTCCACAGGCTGCTTCATCATGGCTATATGTTTATCCAAAAGGAATTAGAGACCTTTTACTCTACACAAAGACAAAGTATAATGATCCACTTATTTATATTACTGAGAATGGCATTGATGAGTTCAATGATCCCAAATTATCACTTGAGGAAGCCCTCTATGACACTCAGAGAGTTGACTATTACTTCCGCCACCTCTATTACCTTCAAAAAGCAATCAAAGAAATTGGAAATCATATTTTTTTCTCTAAATCAAGAAAAGCTATATTGATATCACCGAATTCCCCAGTGGCAAGACTGAGGCCACTTGCGGGAAAGCATATGCCTGGAGAGGTTGTTGCTGTTCGTGTCCCTCTCCTGCATCTCTCAAACTTCCAAATCAATGACTGGCCTGAGCTCTCAACAAAACGCTATGCTTTGATGGTGTTGATGCTCCCTTCTGATAGTGTAAGGCAATGGCATGTGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGACCAGGGAACACGTAAAGCCATGAAAGATGTTTGTTTGAATATAATCGATGTCAAGATTTTGCTTCTAGTTAGTTTGTTAGTCATGAGGTATCATCTTGTTTCTTGCTCTAATTGGGCTCGTCGTCAGAAGGTTTTTGTTGTTTTCTTGCAAGCTAATCTGTTCTCTGATTTGCTTCAAAAGGCTATAAGACGTCATTCTGCTCTTTGTGCTGGCTTGCTACAAGAAAATGGATCCTTCTCATGGATGCCCACAATAGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

263

Amino Acids

30.26

Weight (kDa)

9.14

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	10 - 85	2e-12	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012662)

Species	Orthologous Gene IDs
malus_domestica	MD00G1035300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0359701 RchiOBHm_Chr2g0130321 RchiOBHm_Chr5g0052021 RchiOBHm_Chr5g0055831
rosa_laevigata	RLG00000018153 RLG00000028115
rosa_multiflora	Rmu_sc0000333.1_g000021 Rmu_sc0002587.1_g000019 Rmu_sc0010783.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029830
rosa_rugosa	Rorug02G0114300 Rorug02G0114400 Rorug02G0114500
rosa_samantha	Rh2AG072100 Rh2AG414200 Rh2CG400600 Rh6CG197900
rosa_wichuraiana	Rw2G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	721
AciI	CCGC	2 cut(s)	220, 341
AclWI	GGATC	4 cut(s)	110, 155, 753, 766
AcsI	RAATTY	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	718
AfiI	CCNNNNNNNGG	2 cut(s)	341, 768
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	157, 239, 565, 704
AjnI	CCWGG	2 cut(s)	355, 528
AluBI	AGCT	4 cut(s)	293, 427, 508, 680
AluI	AGCT	4 cut(s)	293, 427, 508, 680
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	4 cut(s)	110, 155, 753, 766
AoxI	GGCC	2 cut(s)	332, 419
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	310
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	758
BanII	GRGCYC	2 cut(s)	429, 646
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	357, 530
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	593
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	357, 530
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	357, 530
BmrI	ACTGGG	1 cut(s)	311
BmsI	GCATC	3 cut(s)	400, 450, 762
BmuI	ACTGGG	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	197
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	539
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 768
Bse1I	ACTGG	2 cut(s)	317, 422
Bse3DI	GCAATG	1 cut(s)	491
BseBI	CCWGG	2 cut(s)	357, 530
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	341, 768
BseMI	GCAATG	1 cut(s)	491
BseMII	CTCAG	4 cut(s)	126, 212, 320, 414
BseNI	ACTGG	2 cut(s)	317, 422
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	334, 421
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	341, 768
BsmAI	GTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	2 cut(s)	334, 421
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	429, 646
Bsp143I	GATC	3 cut(s)	115, 160, 758
BspACI	CCGC	2 cut(s)	220, 341
BspANI	GGCC	2 cut(s)	334, 421
BspCNI	CTCAG	4 cut(s)	127, 211, 321, 415
BspDI	ATCGAT	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	760
BspPI	GGATC	4 cut(s)	110, 155, 753, 766
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	317, 422
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	3 cut(s)	115, 160, 758
BssNI	GRCGYC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	357, 530
BstACI	GRCGYC	1 cut(s)	718
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	3 cut(s)	678, 739, 743
BstDEI	CTNAG	4 cut(s)	135, 198, 329, 423
BstF5I	GGATG	1 cut(s)	777
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	118, 163, 761
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	3 cut(s)	115, 160, 758
BstMWI	GCNNNNNNNGC	1 cut(s)	734
BstNI	CCWGG	2 cut(s)	357, 530
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	355, 528
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	334, 421
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	678, 739, 743
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	573
CviAII	CATG	6 cut(s)	51, 491, 497, 547, 610, 768
DdeI	CTNAG	4 cut(s)	135, 198, 329, 423
DpnI	GATC	3 cut(s)	117, 162, 760
DpnII	GATC	3 cut(s)	115, 160, 758
EciI	GGCGGA	1 cut(s)	209
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	2 cut(s)	429, 646
Eco31I	GGTCTC	1 cut(s)	75
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	355, 528
EcoRV	GATATC	1 cut(s)	303
EcoT38I	GRGCYC	2 cut(s)	429, 646
FaeI	CATG	6 cut(s)	54, 494, 500, 550, 613, 771
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	6 cut(s)	50, 490, 496, 546, 609, 767
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	2 cut(s)	429, 646
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	334, 421
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	718
Hin1II	CATG	6 cut(s)	54, 494, 500, 550, 613, 771
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	35, 208
Hpy188I	TCNGA	4 cut(s)	201, 472, 654, 694
Hpy188III	TCNNGA	3 cut(s)	285, 580, 610
Hpy8I	GTNNAC	2 cut(s)	35, 208
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	4 cut(s)	245, 477, 649, 772
HpyCH4IV	ACGT	2 cut(s)	538, 718
HpyCH4V	TGCA	3 cut(s)	391, 496, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	734
HpyF3I	CTNAG	4 cut(s)	135, 198, 329, 423
HpySE526I	ACGT	2 cut(s)	538, 718
Hsp92I	GRCGYC	1 cut(s)	718
Hsp92II	CATG	6 cut(s)	54, 494, 500, 550, 613, 771
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	3 cut(s)	115, 160, 758
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	3 cut(s)	400, 450, 762
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	2 cut(s)	538, 718
MalI	GATC	3 cut(s)	117, 162, 760
MboI	GATC	3 cut(s)	115, 160, 758
MflI	RGATCY	1 cut(s)	758
MhlI	GDGCHC	2 cut(s)	429, 646
MluCI	AATT	5 cut(s)	75, 167, 255, 310, 637
MnlI	CCTC	8 cut(s)	172, 197, 236, 324, 355, 393, 508, 606
MslI	CAYNNNNRTG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	357, 530
Mva1269I	GAATGC	1 cut(s)	785
MvaI	CCWGG	2 cut(s)	357, 530
MwoI	GCNNNNNNNGC	1 cut(s)	734
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	3 cut(s)	115, 160, 758
NlaIII	CATG	6 cut(s)	54, 494, 500, 550, 613, 771
NlaIV	GGNNCC	1 cut(s)	760
NspI	RCATGY	1 cut(s)	494
PagI	TCATGA	1 cut(s)	609
PctI	GAATGC	1 cut(s)	785
PkrI	GCNGC	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	355, 528
PspGI	CCWGG	2 cut(s)	355, 528
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	758
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	429
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	115, 160, 758
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	357, 530
SduI	GDGCHC	2 cut(s)	429, 646
SfaNI	GCATC	3 cut(s)	400, 450, 762
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	5 cut(s)	75, 167, 255, 310, 637
SsiI	CCGC	2 cut(s)	220, 341
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	355, 528
TaiI	ACGT	2 cut(s)	541, 721
TaqI	TCGA	1 cut(s)	573
TasI	AATT	5 cut(s)	75, 167, 255, 310, 637
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	36, 563
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.