Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012662

Physical Location & Seq

Genomic Coordinates Reverse (-)

61486912 .. 61489066

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG414200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCCCATGCGTACTGCGTTAGAGTTTCAACTGTCGTATACACTCCATCAGCAGACTCCGGTAGGACATACTGTACCCATTCATCTTCCTGTGATCAATCAAGTGTTTAGCACCAACCATGCTGTGAAGATATCACCGAATTCCCCAGTGGCAAGACTGAGGCCACTTGCGGGAAAGCATATGCCTGGAGAGGTTGTTGCTGTTCGTGTCCCTCTCCTGCATCTCTCAAACTTCCAAATCAATGACTGGCCTGAGCTCTCAACAAAACGCTATGCTTTGATGGTGTTGATGCTCCCTTCTGATAGTGCACGACAATGGCATGTGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGACCAGGGAACACGTAAAGCCATGAAAGATGTTTGTTTGAATATAATCGATGTCAAGATTTTGCTTCTAGTTAGTTTGTTAGTCATGAGGTATCATCTTGTTTCTTGCTCTAATTGGGCTCGTTGTCAGAAGGTTTTTGTTGTTTTCTTGCAAGCTAATCTGTTCTCTGATTTGCTTCAAAAGGCTGTAAGACGTCATTCTGCTCTTTGTGCTCGCTTGCTGCAAGAAAATGGATCCTTCTCATGGATGCCCACAATAGCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

GAF HATPase_c HisKA Response_reg

Protein Analysis

206

Amino Acids

23.39

Weight (kDa)

9.54

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012662)

Species	Orthologous Gene IDs
malus_domestica	MD00G1035300.v1.1
rosa_chinensis	RchiOBHm_Chr1g0359701 RchiOBHm_Chr2g0130321 RchiOBHm_Chr5g0052021 RchiOBHm_Chr5g0055831
rosa_laevigata	RLG00000018153 RLG00000028115
rosa_multiflora	Rmu_sc0000333.1_g000021 Rmu_sc0002587.1_g000019 Rmu_sc0010783.1_g000006
rosa_roxburghii	Rroxscaffold_1G00029830
rosa_rugosa	Rorug02G0114300 Rorug02G0114400 Rorug02G0114500
rosa_samantha	Rh2AG072100 Rh2AG414200 Rh2CG400600 Rh6CG197900
rosa_wichuraiana	Rw2G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	38
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	2 cut(s)	582, 595
AcsI	RAATTY	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	547
AfaI	GTAC	2 cut(s)	13, 75
AfiI	CCNNNNNNNGG	2 cut(s)	170, 597
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	29, 394, 533
AjnI	CCWGG	2 cut(s)	184, 357
AluBI	AGCT	3 cut(s)	256, 337, 509
AluI	AGCT	3 cut(s)	256, 337, 509
Alw21I	GWGCWC	3 cut(s)	258, 310, 568
Alw44I	GTGCAC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	582, 595
AoxI	GGCC	2 cut(s)	161, 248
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	574
ApoI	RAATTY	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	310
BamHI	GGATCC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	258, 475
Bbv12I	GWGCWC	3 cut(s)	258, 310, 568
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	2 cut(s)	54, 274
BciT130I	CCWGG	2 cut(s)	186, 359
BclI	TGATCA	1 cut(s)	93
BfaI	CTAG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	575
BlsI	GCNGC	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	186, 359
BmiI	GGNNCC	1 cut(s)	589
BmrFI	CCNGG	2 cut(s)	186, 359
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	229, 279, 591
BmuI	ACTGGG	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	252
Bsa29I	ATCGAT	1 cut(s)	402
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	547
BsaJI	CCNNGG	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	58
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 597
Bse1I	ACTGG	2 cut(s)	146, 251
BseBI	CCWGG	2 cut(s)	186, 359
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	1 cut(s)	606
BseLI	CCNNNNNNNGG	2 cut(s)	170, 597
BseMII	CTCAG	2 cut(s)	149, 243
BseNI	ACTGG	2 cut(s)	146, 251
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	561
BshFI	GGCC	2 cut(s)	163, 250
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	3 cut(s)	258, 310, 568
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	170, 597
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	2 cut(s)	163, 250
Bsp1286I	GDGCHC	4 cut(s)	258, 310, 475, 568
Bsp143I	GATC	2 cut(s)	93, 587
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	163, 250
BspCNI	CTCAG	2 cut(s)	150, 244
BspDI	ATCGAT	1 cut(s)	402
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	582, 595
BsrI	ACTGG	2 cut(s)	146, 251
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	2 cut(s)	93, 587
BssNAI	GTATAC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	547
Bst1107I	GTATAC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	186, 359
Bst4CI	ACNGT	2 cut(s)	33, 73
BstACI	GRCGYC	1 cut(s)	547
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	507, 568, 572
BstDEI	CTNAG	2 cut(s)	158, 252
BstF5I	GGATG	1 cut(s)	606
BstKTI	GATC	2 cut(s)	96, 590
BstMBI	GATC	2 cut(s)	93, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	186, 359
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	184, 357
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BstZ17I	GTATAC	1 cut(s)	39
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	163, 250
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	507, 568, 572
CciI	TCATGA	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	402
Csp6I	GTAC	2 cut(s)	12, 74
CviAII	CATG	7 cut(s)	7, 119, 320, 326, 376, 439, 597
CviJI	RGCY	8 cut(s)	163, 250, 256, 337, 374, 473, 509, 539
CviKI_1	RGCY	8 cut(s)	163, 250, 256, 337, 374, 473, 509, 539
CviQI	GTAC	2 cut(s)	12, 74
DdeI	CTNAG	2 cut(s)	158, 252
DpnI	GATC	2 cut(s)	95, 589
DpnII	GATC	2 cut(s)	93, 587
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	2 cut(s)	258, 475
Eco32I	GATATC	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	184, 357
EcoRV	GATATC	1 cut(s)	132
EcoT38I	GRGCYC	2 cut(s)	258, 475
FaeI	CATG	7 cut(s)	10, 122, 323, 329, 379, 442, 600
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	7 cut(s)	6, 118, 319, 325, 375, 438, 596
FauI	CCCGC	1 cut(s)	163
FauNDI	CATATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	575
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	2 cut(s)	258, 475
Fsp4HI	GCNGC	1 cut(s)	575
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	163, 250
HapII	CCGG	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	547
Hin1II	CATG	7 cut(s)	10, 122, 323, 329, 379, 442, 600
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	39, 308
Hpy188I	TCNGA	3 cut(s)	301, 483, 523
Hpy188III	TCNNGA	2 cut(s)	409, 439
Hpy8I	GTNNAC	2 cut(s)	39, 308
HpyAV	CCTTC	3 cut(s)	306, 478, 601
HpyCH4III	ACNGT	2 cut(s)	33, 73
HpyCH4IV	ACGT	2 cut(s)	367, 547
HpyCH4V	TGCA	5 cut(s)	220, 308, 325, 505, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	2 cut(s)	158, 252
HpySE526I	ACGT	2 cut(s)	367, 547
Hsp92I	GRCGYC	1 cut(s)	547
Hsp92II	CATG	7 cut(s)	10, 122, 323, 329, 379, 442, 600
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	93, 587
LmnI	GCTCC	1 cut(s)	297
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	3 cut(s)	229, 279, 591
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	2 cut(s)	367, 547
MalI	GATC	2 cut(s)	95, 589
MboI	GATC	2 cut(s)	93, 587
MboII	GAAGA	2 cut(s)	77, 139
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	4 cut(s)	258, 310, 475, 568
MluCI	AATT	2 cut(s)	139, 466
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	153, 184, 222, 337, 435
MslI	CAYNNNNRTG	2 cut(s)	313, 324
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	186, 359
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	2 cut(s)	186, 359
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	2 cut(s)	93, 587
NlaIII	CATG	7 cut(s)	10, 122, 323, 329, 379, 442, 600
NlaIV	GGNNCC	1 cut(s)	589
NspI	RCATGY	1 cut(s)	323
PagI	TCATGA	1 cut(s)	438
PctI	GAATGC	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	576
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	184, 357
PspGI	CCWGG	2 cut(s)	184, 357
PspN4I	GGNNCC	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	2 cut(s)	13, 75
RsaNI	GTAC	2 cut(s)	12, 74
RseI	CAYNNNNRTG	2 cut(s)	313, 324
SacI	GAGCTC	1 cut(s)	258
SatI	GCNGC	1 cut(s)	575
Sau3AI	GATC	2 cut(s)	93, 587
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	186, 359
SduI	GDGCHC	4 cut(s)	258, 310, 475, 568
SetI	ASST	9 cut(s)	195, 258, 339, 348, 370, 446, 489, 511, 550
SfaNI	GCATC	3 cut(s)	229, 279, 591
SmiMI	CAYNNNNRTG	2 cut(s)	313, 324
Sse9I	AATT	2 cut(s)	139, 466
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	184, 357
TaaI	ACNGT	2 cut(s)	33, 73
TaiI	ACGT	2 cut(s)	370, 550
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	139, 466
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	574
TspDTI	ATGAA	2 cut(s)	71, 392
TspRI	CASTG	1 cut(s)	153
VneI	GTGCAC	1 cut(s)	306
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	38
XspI	CTAG	1 cut(s)	422
ZraI	GACGTC	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.