Rh2CG400600

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012662
Physical Location & Seq
Reverse (-)
54458688 .. 54466996
8309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG400600.1

Sequence Viewer

Length: 537 bp
ATGGAAAGCATATATATAAGTACTCTTGATAGACATACCATACTGAAAACCACACTTGTTGAGTTGGGTAGAACTTTGGCATTGGAAGAGTGTGCGTTGTGGATGCCCATGCGTACTGCGTTAGAGTTTCAACTGTCGTATACACTCCATCAGCAGACTCCGGTAGGACATACTGTACCCATTCATCTTCCTGTGATCAATCAAGTGTTTAGCACCAACCATGCTGTGAAGATATCACCGAATTCCCCAGTGGCAAGACTGAGGCCACTTGCGGGAAAGCATATGCCTGGAGAGGTTGTTGCTGTTCGTGTCCCTCTCCTGCATCTCTCAAACTTCCAAATCAATGACTGGCCTGAGCTCTCAACAAAACGCTATGCTTTGATGGTGTTGATGCTCCCTTCTGATAGTGCACGACAATGGCATGTGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGACCAGGGAACACGTAAAGCCATGAAAGATGTTTGTTTGAATATAATCGATGTCAAGATTTTGCTTCTAAGTTTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
GAF HATPase_c HisKA Response_reg

Protein Analysis

178

Amino Acids

20.12

Weight (kDa)

7.13

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAF PF01590 10 - 154 2.1e-10 GAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 140
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 241
AfaI GTAC 3 cut(s) 22, 115, 177
AfiI CCNNNNNNNGG 1 cut(s) 272
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 2 cut(s) 131, 496
AjnI CCWGG 2 cut(s) 286, 459
AluBI AGCT 2 cut(s) 358, 439
AluI AGCT 2 cut(s) 358, 439
Alw21I GWGCWC 2 cut(s) 360, 412
Alw44I GTGCAC 1 cut(s) 408
AoxI GGCC 2 cut(s) 263, 350
ApaLI GTGCAC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 360, 412
BccI CCATC 2 cut(s) 156, 376
BciT130I CCWGG 2 cut(s) 288, 461
BclI TGATCA 1 cut(s) 195
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 288, 461
BmrFI CCNGG 2 cut(s) 288, 461
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 93, 331, 381
BmuI ACTGGG 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 460
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 248, 353
BseBI CCWGG 2 cut(s) 288, 461
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 460
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 251, 345
BseNI ACTGG 2 cut(s) 248, 353
BseSI GKGCMC 1 cut(s) 412
BshFI GGCC 2 cut(s) 265, 352
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 360, 412
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 265, 352
Bsp1286I GDGCHC 2 cut(s) 360, 412
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 265, 352
BspCNI CTCAG 2 cut(s) 252, 346
BspDI ATCGAT 1 cut(s) 504
BsrI ACTGG 2 cut(s) 248, 353
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 1 cut(s) 195
BssNAI GTATAC 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 288, 461
Bst4CI ACNGT 2 cut(s) 135, 175
Bst6I CTCTTC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 470
BstDEI CTNAG 3 cut(s) 260, 354, 524
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstNI CCWGG 2 cut(s) 288, 461
BstNSI RCATGY 1 cut(s) 425
BstSCI CCNGG 2 cut(s) 286, 459
BstSLI GKGCMC 1 cut(s) 412
BstZ17I GTATAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 2 cut(s) 265, 352
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 3 cut(s) 21, 114, 176
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviAII CATG 5 cut(s) 109, 221, 422, 428, 478
CviJI RGCY 5 cut(s) 265, 352, 358, 439, 476
CviKI_1 RGCY 5 cut(s) 265, 352, 358, 439, 476
CviQI GTAC 3 cut(s) 21, 114, 176
DdeI CTNAG 3 cut(s) 260, 354, 524
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
DraI TTTAAA 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 360
Eco32I GATATC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 286, 459
EcoRV GATATC 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 5 cut(s) 112, 224, 425, 431, 481
FaqI GGGAC 1 cut(s) 296
FatI CATG 5 cut(s) 108, 220, 421, 427, 477
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 1 cut(s) 282
FbaI TGATCA 1 cut(s) 195
FblI GTMKAC 1 cut(s) 140
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 265, 352
HapII CCGG 1 cut(s) 161
Hin1II CATG 5 cut(s) 112, 224, 425, 431, 481
HinfI GANTC 1 cut(s) 157
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 2 cut(s) 141, 410
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 2 cut(s) 26, 511
Hpy8I GTNNAC 2 cut(s) 141, 410
HpyAV CCTTC 1 cut(s) 408
HpyCH4III ACNGT 2 cut(s) 135, 175
HpyCH4IV ACGT 1 cut(s) 469
HpyCH4V TGCA 3 cut(s) 322, 410, 427
HpyF3I CTNAG 3 cut(s) 260, 354, 524
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 5 cut(s) 112, 224, 425, 431, 481
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 399
LweI GCATC 3 cut(s) 93, 331, 381
MaeII ACGT 1 cut(s) 469
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MboII GAAGA 3 cut(s) 98, 179, 241
MhlI GDGCHC 2 cut(s) 360, 412
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 4 cut(s) 255, 286, 324, 439
MseI TTAA 1 cut(s) 530
MslI CAYNNNNRTG 2 cut(s) 415, 426
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 288, 461
MssI GTTTAAAC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 288, 461
NdeI CATATG 1 cut(s) 282
NdeII GATC 1 cut(s) 195
NlaIII CATG 5 cut(s) 112, 224, 425, 431, 481
NspI RCATGY 1 cut(s) 425
PleI GAGTC 1 cut(s) 151
PmeI GTTTAAAC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 286, 459
PspGI CCWGG 2 cut(s) 286, 459
RsaI GTAC 3 cut(s) 22, 115, 177
RsaNI GTAC 3 cut(s) 21, 114, 176
RseI CAYNNNNRTG 2 cut(s) 415, 426
SacI GAGCTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 530
Sau3AI GATC 1 cut(s) 195
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 288, 461
SduI GDGCHC 2 cut(s) 360, 412
SetI ASST 5 cut(s) 297, 360, 441, 450, 472
SfaNI GCATC 3 cut(s) 93, 331, 381
SmiMI CAYNNNNRTG 2 cut(s) 415, 426
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 272
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 286, 459
TaaI ACNGT 2 cut(s) 135, 175
TaiI ACGT 1 cut(s) 472
TaqI TCGA 1 cut(s) 504
TasI AATT 1 cut(s) 241
TatI WGTACW 1 cut(s) 20
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 255
TspDTI ATGAA 2 cut(s) 173, 494
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 408
XapI RAATTY 1 cut(s) 241
XceI RCATGY 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 140
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.