Rh2AG072100

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012662
Physical Location & Seq
Forward (+)
6056521 .. 6058670
2150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG072100.1

Sequence Viewer

Length: 420 bp
ATGCCTACGCGTACTGCGTTAGAGCTGCAACTGTCGTATACACTCCATCAGCAGAATCCGGTAGGACATACCGTACCCATTCATCTTCATGTGATCAATCAAGTGTTTAGCAGCAACCATGCTGTGAAGATATCACCGAATTCCCCAGTGGCAAGACTGAGGCCACTTGCGGGAAAGCATATGCCTGGAGAGGTTGTTGTTGTTCGTGTCCCTGTCCTGCATCTCTCAAACTTCCAAATCAATGACTGGCCTAAGCTCTCAACAAAACGCTATGCTTTGATGGTGTTGATGCTCCCTTCTGATAGTGCAAGGCAATGGCATGTGCATGAGTTAGAGCTGGTTGAGGTAGTTGCTGACCAGGCTGTAAGACATCATTCTGCTCTTTGTGCTGTCTTGCCTTCTCATGGATGCCCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
GAF HATPase_c HisKA Response_reg

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

9.18

Isoelectric Point (pI)

47.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 38
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 139
AfaI GTAC 2 cut(s) 13, 75
AfiI CCNNNNNNNGG 2 cut(s) 170, 404
AflIII ACRYGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 184, 357
AluBI AGCT 3 cut(s) 25, 256, 337
AluI AGCT 3 cut(s) 25, 256, 337
AoxI GGCC 2 cut(s) 161, 248
ApeKI GCWGC 2 cut(s) 25, 111
ApoI RAATTY 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 126
BbvI GCAGC 2 cut(s) 12, 123
BccI CCATC 2 cut(s) 54, 274
BciT130I CCWGG 2 cut(s) 186, 359
BclI TGATCA 1 cut(s) 93
BisI GCNGC 2 cut(s) 26, 112
BlsI GCNGC 2 cut(s) 27, 113
Bme1390I CCNGG 2 cut(s) 186, 359
BmrFI CCNGG 2 cut(s) 186, 359
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 3 cut(s) 229, 279, 398
BmuI ACTGGG 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 404
Bse1I ACTGG 2 cut(s) 146, 251
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 186, 359
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 170, 404
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 146, 251
BseXI GCAGC 2 cut(s) 12, 123
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 2 cut(s) 163, 250
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 170, 404
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 163, 250
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 170
BspANI GGCC 2 cut(s) 163, 250
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 2 cut(s) 146, 251
BssMI GATC 1 cut(s) 93
BssNAI GTATAC 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 186, 359
Bst4CI ACNGT 2 cut(s) 33, 73
BstDEI CTNAG 2 cut(s) 158, 252
BstF5I GGATG 1 cut(s) 413
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 359, 386
BstNI CCWGG 2 cut(s) 186, 359
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 184, 357
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 12, 123
BstZ17I GTATAC 1 cut(s) 39
BsuRI GGCC 2 cut(s) 163, 250
BtsCI GGATG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 153
Csp6I GTAC 2 cut(s) 12, 74
CviAII CATG 5 cut(s) 89, 119, 320, 326, 404
CviJI RGCY 6 cut(s) 25, 163, 250, 256, 337, 362
CviKI_1 RGCY 6 cut(s) 25, 163, 250, 256, 337, 362
CviQI GTAC 2 cut(s) 12, 74
DdeI CTNAG 2 cut(s) 158, 252
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 184, 357
EcoRV GATATC 1 cut(s) 132
FaeI CATG 5 cut(s) 92, 122, 323, 329, 407
FaqI GGGAC 1 cut(s) 194
FatI CATG 5 cut(s) 88, 118, 319, 325, 403
FauI CCCGC 1 cut(s) 163
FauNDI CATATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 26, 112
Fsp4HI GCNGC 2 cut(s) 26, 112
GluI GCNGC 2 cut(s) 26, 112
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 2 cut(s) 163, 250
HapII CCGG 1 cut(s) 59
Hin1II CATG 5 cut(s) 92, 122, 323, 329, 407
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 306, 408
HpyCH4III ACNGT 2 cut(s) 33, 73
HpyCH4V TGCA 4 cut(s) 28, 220, 308, 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 386
HpyF3I CTNAG 2 cut(s) 158, 252
Hsp92II CATG 5 cut(s) 92, 122, 323, 329, 407
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 297
Lsp1109I GCAGC 2 cut(s) 12, 123
LweI GCATC 3 cut(s) 229, 279, 398
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 77, 139
MluCI AATT 1 cut(s) 139
MluI ACGCGT 1 cut(s) 8
MnlI CCTC 3 cut(s) 153, 184, 337
MslI CAYNNNNRTG 2 cut(s) 87, 324
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 186, 359
MvaI CCWGG 2 cut(s) 186, 359
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 359, 386
NdeI CATATG 1 cut(s) 180
NdeII GATC 1 cut(s) 93
NlaIII CATG 5 cut(s) 92, 122, 323, 329, 407
NspI RCATGY 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 27, 113
Psp6I CCWGG 2 cut(s) 184, 357
PspGI CCWGG 2 cut(s) 184, 357
RsaI GTAC 2 cut(s) 13, 75
RsaNI GTAC 2 cut(s) 12, 74
RseI CAYNNNNRTG 2 cut(s) 87, 324
SatI GCNGC 2 cut(s) 26, 112
Sau3AI GATC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 186, 359
SetI ASST 5 cut(s) 27, 195, 258, 339, 348
SfaNI GCATC 3 cut(s) 229, 279, 398
SmiMI CAYNNNNRTG 2 cut(s) 87, 324
Sse9I AATT 1 cut(s) 139
SsiI CCGC 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 184, 357
TaaI ACNGT 2 cut(s) 33, 73
TasI AATT 1 cut(s) 139
TfiI GAWTC 1 cut(s) 55
TscAI CASTG 1 cut(s) 153
TseI GCWGC 2 cut(s) 25, 111
TspDTI ATGAA 2 cut(s) 71, 77
TspRI CASTG 1 cut(s) 153
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.