Rmu_sc0002587.1_g000019

May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002587.1
OG0012662
Physical Location & Seq
Forward (+)
52653 .. 55173
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002587.1_g000019.1.cds

Sequence Viewer

Length: 471 bp
atgcgtactgcgttagagctgcaactgtcgtatacactccatcagcagaatctggtaggacatactgtacccattcatcttcctgtgatcaatcaagtgtttagcaccaaccatgccgtgaagatatcaccaaattccccagtgacaagactgaggccacttgcgggaaagcatatgcctggagaggttgttgctgttcgtgtccctctcctgcatctctcaaacttccaaatcaattactggcctgagctctcaacaaaactctatgctttgatggtgttgatgctcccttctgatagtgcaaggcaatggcatgtgcatgagttagagctggttgaggtagttactgaccagggttatgcatgtatacttacgcaccccagaataccttccgtcttctatgaccaattctatgattcgggtgattccattcatgatcagattgtgaaactggtacagcagtatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001101 GO:0002237 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009308 GO:0009408 GO:0009593 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009651 GO:0009690 GO:0009719 GO:0009720 GO:0009723 GO:0009725 GO:0009726 GO:0009727 GO:0009733 GO:0009737 GO:0009739 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010087 GO:0010104 GO:0010105 GO:0010119 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0016999 GO:0017000 GO:0017144 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0033993 GO:0034754 GO:0035556 GO:0036211 GO:0038023 GO:0038199 GO:0042221 GO:0042445 GO:0042545 GO:0042562 GO:0042742 GO:0042743 GO:0042802 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046483 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048856 GO:0050665 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051186 GO:0051188 GO:0051239 GO:0051301 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0051740 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0072328 GO:0072593 GO:0097305 GO:0098542 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:1903409 GO:2000026
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
GAF HATPase_c HisKA Response_reg

Protein Analysis

156

Amino Acids

17.79

Weight (kDa)

6.53

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 32, 367
AciI CCGC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 7, 69, 456
AfiI CCNNNNNNNGG 1 cut(s) 164
AjnI CCWGG 2 cut(s) 178, 351
AluBI AGCT 4 cut(s) 19, 250, 331, 468
AluI AGCT 4 cut(s) 19, 250, 331, 468
Alw21I GWGCWC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 52
AoxI GGCC 2 cut(s) 155, 242
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 120, 434
BaeI ACNNNNGTAYC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 6
BccI CCATC 2 cut(s) 48, 268
BceAI ACGGC 1 cut(s) 101
BciT130I CCWGG 2 cut(s) 180, 353
BclI TGATCA 2 cut(s) 87, 436
BfaI CTAG 1 cut(s) 469
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 180, 353
BmrFI CCNGG 2 cut(s) 180, 353
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 223, 273
BmuI ACTGGG 1 cut(s) 134
BpiI GAAGAC 1 cut(s) 388
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 352
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 140, 245, 456
Bse3DI GCAATG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 180, 353
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 143, 237
BseNI ACTGG 3 cut(s) 140, 245, 456
BseXI GCAGC 1 cut(s) 6
BshFI GGCC 2 cut(s) 157, 244
BsiHKAI GWGCWC 1 cut(s) 252
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 2 cut(s) 157, 244
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 87, 436
BspACI CCGC 1 cut(s) 164
BspANI GGCC 2 cut(s) 157, 244
BspCNI CTCAG 2 cut(s) 144, 238
BspHI TCATGA 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 314
BsrI ACTGG 3 cut(s) 140, 245, 456
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 2 cut(s) 87, 436
BssNAI GTATAC 2 cut(s) 33, 368
Bst1107I GTATAC 2 cut(s) 33, 368
Bst2UI CCWGG 2 cut(s) 180, 353
Bst4CI ACNGT 2 cut(s) 27, 67
BstDEI CTNAG 2 cut(s) 152, 246
BstKTI GATC 2 cut(s) 90, 439
BstMBI GATC 2 cut(s) 87, 436
BstNI CCWGG 2 cut(s) 180, 353
BstNSI RCATGY 2 cut(s) 317, 366
BstSCI CCNGG 2 cut(s) 178, 351
BstV1I GCAGC 1 cut(s) 6
BstV2I GAAGAC 1 cut(s) 388
BstZ17I GTATAC 2 cut(s) 33, 368
BsuRI GGCC 2 cut(s) 157, 244
BtsIMutI CAGTG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 433
Csp6I GTAC 3 cut(s) 6, 68, 455
CviAII CATG 5 cut(s) 113, 314, 320, 363, 434
CviJI RGCY 6 cut(s) 19, 157, 244, 250, 331, 468
CviKI_1 RGCY 6 cut(s) 19, 157, 244, 250, 331, 468
CviQI GTAC 3 cut(s) 6, 68, 455
DdeI CTNAG 2 cut(s) 152, 246
DpnI GATC 2 cut(s) 89, 438
DpnII GATC 2 cut(s) 87, 436
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 178, 351
EcoRV GATATC 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 5 cut(s) 116, 317, 323, 366, 437
FaqI GGGAC 1 cut(s) 188
FatI CATG 5 cut(s) 112, 313, 319, 362, 433
FauI CCCGC 1 cut(s) 157
FauNDI CATATG 1 cut(s) 174
FbaI TGATCA 2 cut(s) 87, 436
FblI GTMKAC 2 cut(s) 32, 367
Fnu4HI GCNGC 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 20
FspBI CTAG 1 cut(s) 469
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 157, 244
Hin1II CATG 5 cut(s) 116, 317, 323, 366, 437
HinfI GANTC 3 cut(s) 49, 416, 425
HphI GGTGA 2 cut(s) 120, 434
Hpy166II GTNNAC 2 cut(s) 33, 368
Hpy188I TCNGA 2 cut(s) 295, 441
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 2 cut(s) 33, 368
HpyAV CCTTC 2 cut(s) 300, 399
HpyCH4III ACNGT 2 cut(s) 27, 67
HpyCH4V TGCA 5 cut(s) 22, 214, 302, 319, 362
HpyF3I CTNAG 2 cut(s) 152, 246
Hsp92II CATG 5 cut(s) 116, 317, 323, 366, 437
Ksp22I TGATCA 2 cut(s) 87, 436
Kzo9I GATC 2 cut(s) 87, 436
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 1 cut(s) 6
LweI GCATC 2 cut(s) 223, 273
MaeI CTAG 1 cut(s) 469
MaeIII GTNAC 2 cut(s) 142, 343
MalI GATC 2 cut(s) 89, 438
MboI GATC 2 cut(s) 87, 436
MboII GAAGA 3 cut(s) 71, 133, 388
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 3 cut(s) 133, 235, 407
MnlI CCTC 4 cut(s) 147, 178, 216, 331
Mph1103I ATGCAT 1 cut(s) 364
MroXI GAANNNNTTC 1 cut(s) 388
MslI CAYNNNNRTG 1 cut(s) 318
MspR9I CCNGG 2 cut(s) 180, 353
MvaI CCWGG 2 cut(s) 180, 353
NdeI CATATG 1 cut(s) 174
NdeII GATC 2 cut(s) 87, 436
NlaIII CATG 5 cut(s) 116, 317, 323, 366, 437
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 364
NspI RCATGY 2 cut(s) 317, 366
PagI TCATGA 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 49, 416, 425
PkrI GCNGC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 178, 351
PspGI CCWGG 2 cut(s) 178, 351
PstNI CAGNNNCTG 1 cut(s) 52
RsaI GTAC 3 cut(s) 7, 69, 456
RsaNI GTAC 3 cut(s) 6, 68, 455
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 252
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 87, 436
ScrFI CCNGG 2 cut(s) 180, 353
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 21, 189, 252, 333, 342, 391, 470
SfaNI GCATC 2 cut(s) 223, 273
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 3 cut(s) 133, 235, 407
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 469
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 2 cut(s) 178, 351
TaaI ACNGT 2 cut(s) 27, 67
TasI AATT 3 cut(s) 133, 235, 407
TfiI GAWTC 3 cut(s) 49, 416, 425
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 65, 422
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 1 cut(s) 147
XapI RAATTY 1 cut(s) 133
XceI RCATGY 2 cut(s) 317, 366
XmiI GTMKAC 2 cut(s) 32, 367
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 1 cut(s) 469
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.