MD00G1045200.v1.1

CTLH/CRA C-terminal to LisH motif domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0008461
Physical Location & Seq
Forward (+)
8255591 .. 8260268
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1045200.v1.1.491

Sequence Viewer

Length: 2187 bp
ATGGACTCGACGCCAATTAACTGGGAAGCCCTAGACGCTCTCATCATCGATTTCGCCAAATCGGAGAAGCTAGTCGAAGACTCCTCCTCCACTTTTACGACGTCGTCTTCCCCGCCCTCTTCCCCTTCGTCTTCCTCTTCCCCCTCCTCTATCTCCTCCTCGTCGTACCACTCGAGATTGATCATTCGTCAGATCAGACGGTCTTTGGAGGCCGGTCACATTGACGCCGCCATCGGTCTCCTCCGCTCCCACGCCCCTTTCATTCTCGACGATCACAGGCTCCTCTTCCGCTTACAGAAACAGAGGTTTATTGAGCTATTGAGGAGAGGGACCGCAGAGGATCGTGATTCTGCAATCAATTGCTTGAGGAATTCTCTTGCTCCGTGTGCCCTCGACGCTTATCCGGAAGCTTATGAGGAATTCAAGCATGTACTGCTTGCTTTTATATATGACAAAGAAGACCAATCTTCTCCGGTAGCAACTGAGTGGTCTGAAAAGAGGAGGTTTGACATTGCCGGATTAGTTTCCACTGTCTTGAGAGCTTATTTACATGCTTATGATCCAATCTTCTCGATGACCTTGAGATATTTGATAAGCATCCACAAGGGATTTTGTTTTCGTCAAGGAATTTCGTCGCCTATTTCAGATCTTACACATAGATTACTTCTTGAGGAGCGTGACCCCCCTGCAACACCTCAGGAGAGCTTGTTTGAAGCACCTCCATTTGATGAGGTTGATATACAAGCCCTTGCACATGCTGTAGAGCTCACGAGACAGGGAGCTGTAGATAGTTTGAGATTTGCTAAGGGTGATTTATTTCAGGCGTTTCAGAATGAATTATGCAGAATGAGATTTGATGTTGCCATGCTTGACGAGCTGGTGCATGAGTATTGTGTTTACAGGGGCATTGTGGATTCTGGTTTTGCAACTTCTTCTGTGTCTGGGGTGCAAAGCCTTTCCAAATCTTTGAAAGTTGATCAACCGGTGATTGGGCATTCTCCGTCAAGAGACTGTTCTCATGAGGTCGATTATGGAGCCAGCAAACATTCTGATGGTGAGATTTCCGTTAGTAATGATAATCTAGGTGGTTCCCCCGGAAAGAATTCTGATGTGACGAGCATGCAAGGAATGGATATTGAAATGCGTTACGTTTGTGAGCCATCGAGCACTAATGAAGATTGTAGCACCAGTGGATCACATCAGCCTGATAAACTCAGAGTTTTACAAAGAAGACCCAGCGCACCTGCAGAAAGAAGTAAACGCAAGCGATGGAGGGGAAGACAAGATGATCTTGATTTTACTCCTGGCATTTCCTGTAAGGAGATGAGTAAAGACTCTAAAGAGCTTAGCACAATTGACCCGGTTTCTGATACGTATTCATCAAGGGAACAGCAGGCTTCAGAATGCTTAAGTTTAGGCCTTGACAACGTGGAGGACAAGTATGAGATTGTGATTGGGATGAAGGAACTAGCTAGCAAAGGAATGGCTGCGGAGGTCGTGGAAGTAGTTAATTCTATGGACCCAAATTTTTTTGTACAAAATCCTGTTTTACTCTTCCAACTTAAGCAGGTTGAATTCCTTAAGCTTGTCAGCTCAGGTGATCATTCTAGTGCTCTGAGGGTTGCATGCTCTCATTTAGGTCCTTTAGCTGCAAGTGATCCAGTTTTACTGAAGCCCTTGAAGGAGACTCTGTTAGCACTGCTCCAACCTAATGAAGATGCACTTGGGAAAGGCTTGCCCTTACATGCTCTTGCAACTTCACTCCAGGTTGCAATTGGTAGGAGGCTTGGCATTGACGAGCCCCAGCTTATGAAAATAATGAGAGCAACCCTTCACACCCATAATGAGTGGTTTAAACTTCAAATGTGTAAAGACCACTTCGAAAGCCTATTAAAGATTGATTCCTTGAAAGAAGTTAATACTCCTTCGCTTGCTGCTGCCGCTGCTTCTAAGTCAAATGCAGATAGTTGCTCTAATGGGTCTTCCCAAGTAACAGTATCTTCAAGCACGAGGATGGTGGAAGATGGTAGCAGCCTGACTCAAGTGTCGTCTAGAGATGTTGTGTGTGATGAAACTGCCATACTAAAAGTAATGGAATTTCTAGCTTTGCCCAGGGCCGATGCTATCCATCTTCTTGCACAATACAACGGAAATGCCGAGACCGTCATTCAACAGATATTCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH

Protein Analysis

729

Amino Acids

80.29

Weight (kDa)

5.38

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTLH PF10607 63 - 180 3.7e-12 CTLH/CRA C-terminal to LisH motif domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1252
AasI GACNNNNNNGTC 1 cut(s) 2044
AatII GACGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 1252, 1558
AccBSI CCGCTC 1 cut(s) 246
AccII CGCG 1 cut(s) 2183
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 7 cut(s) 113, 228, 244, 289, 333, 1490, 1941
AclWI GGATC 4 cut(s) 348, 554, 1201, 1652
AcsI RAATTY 7 cut(s) 370, 419, 627, 1102, 1525, 1574, 2096
AcuI CTGAAG 2 cut(s) 1383, 1691
AcyI GRCGYC 3 cut(s) 11, 101, 225
AfaI GTAC 3 cut(s) 167, 432, 1536
AfiI CCNNNNNNNGG 1 cut(s) 989
AflII CTTAAG 3 cut(s) 1408, 1562, 1580
AgeI ACCGGT 1 cut(s) 982
AjnI CCWGG 3 cut(s) 1303, 1764, 2111
AjuI GAANNNNNNNTTGG 2 cut(s) 1707, 1739
Alw21I GWGCWC 3 cut(s) 768, 1169, 1615
Alw26I GTCTC 5 cut(s) 242, 766, 1002, 1679, 2153
AlwI GGATC 4 cut(s) 348, 554, 1201, 1652
Ama87I CYCGRG 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 3 cut(s) 210, 1417, 2115
ApeKI GCWGC 6 cut(s) 1487, 1649, 1934, 1937, 1943, 2031
ApoI RAATTY 7 cut(s) 370, 419, 627, 1102, 1525, 1574, 2096
AsiGI ACCGGT 1 cut(s) 982
Asp700I GAANNNNTTC 1 cut(s) 1102
AspLEI GCGC 1 cut(s) 1241
AspS9I GGNCC 4 cut(s) 330, 1519, 1640, 2115
AsuC2I CCSGG 2 cut(s) 1095, 1361
AsuHPI GGTGA 4 cut(s) 821, 997, 1067, 1610
AsuII TTCGAA 1 cut(s) 1881
AsuNHI GCTAGC 1 cut(s) 1472
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 3 cut(s) 330, 1519, 1640
AxyI CCTNAGG 1 cut(s) 696
BaeGI GKGCMC 1 cut(s) 391
BanII GRGCYC 2 cut(s) 768, 1803
BauI CACGAG 2 cut(s) 769, 2008
BbsI GAAGAC 7 cut(s) 84, 99, 123, 465, 1237, 1285, 1974
Bbv12I GWGCWC 3 cut(s) 768, 1169, 1615
BbvI GCAGC 6 cut(s) 1474, 1636, 1921, 1924, 1930, 2043
BccI CCATC 7 cut(s) 239, 1046, 1168, 1263, 2008, 2018, 2136
BciT130I CCWGG 3 cut(s) 1305, 1766, 2113
BclI TGATCA 3 cut(s) 180, 976, 1600
BcnI CCSGG 2 cut(s) 1095, 1361
BcoDI GTCTC 5 cut(s) 242, 766, 1002, 1679, 2153
BfaI CTAG 8 cut(s) 32, 71, 1082, 1469, 1473, 1608, 2052, 2102
BfmI CTRYAG 3 cut(s) 759, 783, 1245
BfrI CTTAAG 3 cut(s) 1408, 1562, 1580
BfuAI ACCTGC 2 cut(s) 1252, 1558
BglII AGATCT 1 cut(s) 646
BisI GCNGC 8 cut(s) 228, 1488, 1650, 1935, 1938, 1941, 1944, 2032
BlpI GCTNAGC 1 cut(s) 1346
BlsI GCNGC 8 cut(s) 229, 1489, 1651, 1936, 1939, 1942, 1945, 2033
Bme1390I CCNGG 5 cut(s) 1095, 1305, 1361, 1766, 2113
Bme18I GGWCC 3 cut(s) 330, 1519, 1640
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 4 cut(s) 330, 1519, 1640, 2115
BmiI GGNNCC 5 cut(s) 281, 331, 1036, 1090, 1521
BmrFI CCNGG 5 cut(s) 1095, 1305, 1361, 1766, 2113
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 606, 1708, 2110
BmtI GCTAGC 1 cut(s) 1476
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 7 cut(s) 84, 99, 123, 465, 1237, 1285, 1974
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 1 cut(s) 1748
Bpu10I CCTNAGC 2 cut(s) 804, 1594
Bpu1102I GCTNAGC 1 cut(s) 1346
Bpu14I TTCGAA 1 cut(s) 1881
BpuEI CTTGAG 5 cut(s) 385, 556, 601, 689, 2025
BpuMI CCSGG 2 cut(s) 1095, 1361
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 1374
BsaBI GATNNNNATC 1 cut(s) 596
BsaHI GRCGYC 3 cut(s) 11, 101, 225
BsaI GGTCTC 2 cut(s) 242, 2153
BsaJI CCNNGG 3 cut(s) 1093, 2111, 2112
BsaWI WCCGGW 3 cut(s) 403, 472, 982
BsaXI ACNNNNNCTCC 8 cut(s) 71, 101, 692, 722, 1424, 1454, 1676, 1706
Bsc4I CCNNNNNNNGG 1 cut(s) 989
Bse118I RCCGGY 2 cut(s) 212, 982
Bse1I ACTGG 3 cut(s) 26, 1188, 1661
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 510
Bse8I GATNNNNATC 1 cut(s) 596
BseAI TCCGGA 1 cut(s) 403
BseBI CCWGG 3 cut(s) 1305, 1766, 2113
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 3 cut(s) 1093, 2111, 2112
BseGI GGATG 3 cut(s) 597, 1464, 2019
BseJI GATNNNNATC 1 cut(s) 596
BseLI CCNNNNNNNGG 1 cut(s) 989
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 5 cut(s) 474, 710, 1228, 1607, 1608
BseNI ACTGG 3 cut(s) 26, 1188, 1661
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 6 cut(s) 1474, 1636, 1921, 1924, 1930, 2043
BseYI CCCAGC 2 cut(s) 1235, 1803
Bsh1236I CGCG 1 cut(s) 2183
BshFI GGCC 3 cut(s) 212, 1419, 2117
BshTI ACCGGT 1 cut(s) 982
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 3 cut(s) 768, 1169, 1615
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 7 cut(s) 213, 404, 473, 516, 983, 1095, 1361
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 989
BsmAI GTCTC 5 cut(s) 242, 766, 1002, 1679, 2153
BsmFI GGGAC 1 cut(s) 343
BsmI GAATGC 2 cut(s) 994, 1409
BsnI GGCC 3 cut(s) 212, 1419, 2117
Bso31I GGTCTC 2 cut(s) 242, 2153
BsoBI CYCGRG 1 cut(s) 172
Bsp119I TTCGAA 1 cut(s) 1881
Bsp1286I GDGCHC 5 cut(s) 391, 768, 1169, 1615, 1803
Bsp13I TCCGGA 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 1534
Bsp1720I GCTNAGC 1 cut(s) 1346
BspACI CCGC 7 cut(s) 113, 228, 244, 289, 333, 1490, 1941
BspANI GGCC 3 cut(s) 212, 1419, 2117
BspCNI CTCAG 5 cut(s) 475, 709, 1227, 1607, 1608
BspDI ATCGAT 1 cut(s) 48
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 2183
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 5 cut(s) 281, 331, 1036, 1090, 1521
BspMAI CTGCAG 1 cut(s) 1249
BspMI ACCTGC 2 cut(s) 1252, 1558
BspOI GCTAGC 1 cut(s) 1476
BspPI GGATC 4 cut(s) 348, 554, 1201, 1652
BspT104I TTCGAA 1 cut(s) 1881
BspTI CTTAAG 3 cut(s) 1408, 1562, 1580
BspTNI GGTCTC 2 cut(s) 242, 2153
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 510
BsrFI RCCGGY 2 cut(s) 212, 982
BsrGI TGTACA 1 cut(s) 1534
BsrI ACTGG 3 cut(s) 26, 1188, 1661
BssAI RCCGGY 2 cut(s) 212, 982
BssECI CCNNGG 3 cut(s) 1093, 2111, 2112
BssNI GRCGYC 3 cut(s) 11, 101, 225
BssSI CACGAG 2 cut(s) 769, 2008
Bst2BI CACGAG 2 cut(s) 769, 2008
Bst2UI CCWGG 3 cut(s) 1305, 1766, 2113
Bst4CI ACNGT 5 cut(s) 201, 532, 1013, 1996, 2164
Bst6I CTCTTC 4 cut(s) 124, 142, 290, 1559
BstACI GRCGYC 3 cut(s) 11, 101, 225
BstAFI CTTAAG 3 cut(s) 1408, 1562, 1580
BstAPI GCANNNNNTGC 1 cut(s) 433
BstAUI TGTACA 1 cut(s) 1534
BstBAI YACGTR 1 cut(s) 1374
BstBI TTCGAA 1 cut(s) 1881
BstC8I GCNNGC 9 cut(s) 438, 1039, 1121, 1265, 1395, 1474, 1627, 1736, 1932
BstDEI CTNAG 8 cut(s) 483, 696, 804, 1214, 1346, 1594, 1616, 1950
BstF5I GGATG 3 cut(s) 597, 1464, 2019
BstFNI CGCG 1 cut(s) 2183
BstHHI GCGC 1 cut(s) 1241
BstMAI GTCTC 5 cut(s) 242, 766, 1002, 1679, 2153
BstMWI GCNNNNNNNGC 7 cut(s) 35, 386, 395, 433, 874, 1940, 1943
BstNI CCWGG 3 cut(s) 1305, 1766, 2113
BstNSI RCATGY 6 cut(s) 431, 554, 758, 1123, 1629, 1748
BstSCI CCNGG 5 cut(s) 1093, 1303, 1359, 1764, 2111
BstSFI CTRYAG 3 cut(s) 759, 783, 1245
BstSLI GKGCMC 1 cut(s) 391
BstSNI TACGTA 1 cut(s) 1374
BstUI CGCG 1 cut(s) 2183
BstV1I GCAGC 6 cut(s) 1474, 1636, 1921, 1924, 1930, 2043
BstV2I GAAGAC 7 cut(s) 84, 99, 123, 465, 1237, 1285, 1974
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 21
BstYI RGATCY 1 cut(s) 646
Bsu15I ATCGAT 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 696
BsuRI GGCC 3 cut(s) 212, 1419, 2117
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 1282
BtsCI GGATG 3 cut(s) 597, 1464, 2019
BtsI GCAGTG 1 cut(s) 1697
BtsIMutI CAGTG 3 cut(s) 528, 1195, 1697
BveI ACCTGC 2 cut(s) 1252, 1558
Cac8I GCNNGC 9 cut(s) 438, 1039, 1121, 1265, 1395, 1474, 1627, 1736, 1932
CciI TCATGA 1 cut(s) 1018
CfoI GCGC 1 cut(s) 1241
Cfr10I RCCGGY 2 cut(s) 212, 982
Cfr13I GGNCC 4 cut(s) 330, 1519, 1640, 2115
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 4 cut(s) 19, 44, 233, 404
Csp6I GTAC 3 cut(s) 166, 431, 1535
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 9 cut(s) 428, 551, 755, 865, 884, 1019, 1120, 1626, 1745
CviQI GTAC 3 cut(s) 166, 431, 1535
DdeI CTNAG 8 cut(s) 483, 696, 804, 1214, 1346, 1594, 1616, 1950
DraI TTTAAA 1 cut(s) 1855
DrdI GACNNNNNNGTC 1 cut(s) 2044
DseDI GACNNNNNNGTC 1 cut(s) 2044
Eam1104I CTCTTC 4 cut(s) 124, 142, 290, 1559
EarI CTCTTC 4 cut(s) 124, 142, 290, 1559
Ecl136II GAGCTC 1 cut(s) 766
Eco105I TACGTA 1 cut(s) 1374
Eco147I AGGCCT 1 cut(s) 1419
Eco24I GRGCYC 2 cut(s) 768, 1803
Eco31I GGTCTC 2 cut(s) 242, 2153
Eco47I GGWCC 3 cut(s) 330, 1519, 1640
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 2 cut(s) 1383, 1691
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 766
EcoO109I RGGNCCY 1 cut(s) 1640
EcoRI GAATTC 4 cut(s) 370, 419, 1102, 1574
EcoRII CCWGG 3 cut(s) 1303, 1764, 2111
EcoT38I GRGCYC 2 cut(s) 768, 1803
FaeI CATG 9 cut(s) 431, 554, 758, 868, 887, 1022, 1123, 1629, 1748
FalI AAGNNNNNCTT 4 cut(s) 1275, 1307, 1707, 1739
FaqI GGGAC 1 cut(s) 343
FatI CATG 9 cut(s) 427, 550, 754, 864, 883, 1018, 1119, 1625, 1744
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 3 cut(s) 180, 976, 1600
Fnu4HI GCNGC 8 cut(s) 228, 1488, 1650, 1935, 1938, 1941, 1944, 2032
FokI GGATG 3 cut(s) 584, 1471, 2026
FriOI GRGCYC 2 cut(s) 768, 1803
Fsp4HI GCNGC 8 cut(s) 228, 1488, 1650, 1935, 1938, 1941, 1944, 2032
FspBI CTAG 8 cut(s) 32, 71, 1082, 1469, 1473, 1608, 2052, 2102
GlaI GCGC 1 cut(s) 1240
GluI GCNGC 8 cut(s) 228, 1488, 1650, 1935, 1938, 1941, 1944, 2032
GsaI CCCAGC 2 cut(s) 1239, 1807
GsuI CTGGAG 1 cut(s) 1748
HaeIII GGCC 3 cut(s) 212, 1419, 2117
HapII CCGG 7 cut(s) 213, 404, 473, 516, 983, 1095, 1361
HgaI GACGC 4 cut(s) 19, 44, 233, 404
HhaI GCGC 1 cut(s) 1241
Hin1I GRCGYC 3 cut(s) 11, 101, 225
Hin1II CATG 9 cut(s) 431, 554, 758, 868, 887, 1022, 1123, 1629, 1748
Hin6I GCGC 1 cut(s) 1239
HinP1I GCGC 1 cut(s) 1239
HindIII AAGCTT 2 cut(s) 408, 1583
HinfI GANTC 8 cut(s) 5, 80, 347, 914, 1334, 1687, 1901, 2038
HpaII CCGG 7 cut(s) 213, 404, 473, 516, 983, 1095, 1361
HphI GGTGA 4 cut(s) 821, 997, 1067, 1610
Hpy166II GTNNAC 2 cut(s) 898, 1259
Hpy8I GTNNAC 2 cut(s) 898, 1259
Hpy99I CGWCG 7 cut(s) 13, 103, 106, 166, 272, 398, 637
HpyAV CCTTC 5 cut(s) 135, 1456, 1675, 1841, 1935
HpyCH4III ACNGT 5 cut(s) 201, 532, 1013, 1996, 2164
HpyCH4IV ACGT 4 cut(s) 101, 1149, 1373, 1428
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 386, 395, 433, 874, 1940, 1943
HpyF3I CTNAG 8 cut(s) 483, 696, 804, 1214, 1346, 1594, 1616, 1950
HpySE526I ACGT 4 cut(s) 101, 1149, 1373, 1428
Hsp92I GRCGYC 3 cut(s) 11, 101, 225
Hsp92II CATG 9 cut(s) 431, 554, 758, 868, 887, 1022, 1123, 1629, 1748
HspAI GCGC 1 cut(s) 1239
Kpn2I TCCGGA 1 cut(s) 403
Ksp22I TGATCA 3 cut(s) 180, 976, 1600
LmnI GCTCC 7 cut(s) 251, 285, 385, 673, 779, 1034, 1707
Lsp1109I GCAGC 6 cut(s) 1474, 1636, 1921, 1924, 1930, 2043
LweI GCATC 3 cut(s) 606, 1708, 2110
MaeI CTAG 8 cut(s) 32, 71, 1082, 1469, 1473, 1608, 2052, 2102
MaeII ACGT 4 cut(s) 101, 1149, 1373, 1428
MaeIII GTNAC 5 cut(s) 215, 677, 1111, 1145, 1990
MbiI CCGCTC 1 cut(s) 246
MfeI CAATTG 3 cut(s) 358, 1353, 1773
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 5 cut(s) 391, 768, 1169, 1615, 1803
MlyI GAGTC 4 cut(s) 74, 1328, 1681, 2032
MmeI TCCRAC 2 cut(s) 1582, 1729
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 1102
MseI TTAA 8 cut(s) 18, 1409, 1509, 1563, 1581, 1854, 1892, 1917
MslI CAYNNNNRTG 4 cut(s) 555, 1050, 1608, 2012
MspA1I CMGCKG 1 cut(s) 1943
MspCI CTTAAG 3 cut(s) 1408, 1562, 1580
MspI CCGG 7 cut(s) 213, 404, 473, 516, 983, 1095, 1361
MspR9I CCNGG 5 cut(s) 1095, 1305, 1361, 1766, 2113
MssI GTTTAAAC 1 cut(s) 1855
MunI CAATTG 3 cut(s) 358, 1353, 1773
Mva1269I GAATGC 2 cut(s) 994, 1409
MvaI CCWGG 3 cut(s) 1305, 1766, 2113
MvnI CGCG 1 cut(s) 2183
MwoI GCNNNNNNNGC 7 cut(s) 35, 386, 395, 433, 874, 1940, 1943
NciI CCSGG 2 cut(s) 1095, 1361
NheI GCTAGC 1 cut(s) 1472
NlaIII CATG 9 cut(s) 431, 554, 758, 868, 887, 1022, 1123, 1629, 1748
NlaIV GGNNCC 5 cut(s) 281, 331, 1036, 1090, 1521
NmeAIII GCCGAG 1 cut(s) 2182
NmuCI GTSAC 3 cut(s) 215, 677, 1111
NspI RCATGY 6 cut(s) 431, 554, 758, 1123, 1629, 1748
NspV TTCGAA 1 cut(s) 1881
PaeI GCATGC 2 cut(s) 1123, 1629
PaeR7I CTCGAG 1 cut(s) 172
PagI TCATGA 1 cut(s) 1018
PaqCI CACCTGC 1 cut(s) 1252
PasI CCCWGGG 1 cut(s) 2112
PceI AGGCCT 1 cut(s) 1419
PcsI WCGNNNNNNNCGW 2 cut(s) 170, 2154
PctI GAATGC 2 cut(s) 994, 1409
PdmI GAANNNNTTC 1 cut(s) 1102
PfeI GAWTC 3 cut(s) 347, 914, 1901
PflFI GACNNNGTC 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 982
PkrI GCNGC 8 cut(s) 229, 1489, 1651, 1936, 1939, 1942, 1945, 2033
PleI GAGTC 4 cut(s) 74, 1328, 1681, 2032
PmeI GTTTAAAC 1 cut(s) 1855
PpsI GAGTC 4 cut(s) 74, 1328, 1681, 2032
Ppu21I YACGTR 1 cut(s) 1374
PpuMI RGGWCCY 1 cut(s) 1640
Psp124BI GAGCTC 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 1640
Psp6I CCWGG 3 cut(s) 1303, 1764, 2111
PspFI CCCAGC 2 cut(s) 1235, 1803
PspGI CCWGG 3 cut(s) 1303, 1764, 2111
PspN4I GGNNCC 5 cut(s) 281, 331, 1036, 1090, 1521
PspPI GGNCC 4 cut(s) 330, 1519, 1640, 2115
PspPPI RGGWCCY 1 cut(s) 1640
PstI CTGCAG 1 cut(s) 1249
PsuI RGATCY 1 cut(s) 646
PsyI GACNNNGTC 1 cut(s) 103
RsaI GTAC 3 cut(s) 167, 432, 1536
RsaNI GTAC 3 cut(s) 166, 431, 1535
RseI CAYNNNNRTG 4 cut(s) 555, 1050, 1608, 2012
SacI GAGCTC 1 cut(s) 768
SaqAI TTAA 8 cut(s) 18, 1409, 1509, 1563, 1581, 1854, 1892, 1917
SatI GCNGC 8 cut(s) 228, 1488, 1650, 1935, 1938, 1941, 1944, 2032
Sau96I GGNCC 4 cut(s) 330, 1519, 1640, 2115
SchI GAGTC 4 cut(s) 74, 1328, 1681, 2032
ScrFI CCNGG 5 cut(s) 1095, 1305, 1361, 1766, 2113
SduI GDGCHC 5 cut(s) 391, 768, 1169, 1615, 1803
SfaNI GCATC 3 cut(s) 606, 1708, 2110
SfcI CTRYAG 3 cut(s) 759, 783, 1245
Sfr274I CTCGAG 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 1881
SinI GGWCC 3 cut(s) 330, 1519, 1640
SlaI CTCGAG 1 cut(s) 172
SmiMI CAYNNNNRTG 4 cut(s) 555, 1050, 1608, 2012
SmlI CTYRAG 9 cut(s) 172, 364, 535, 580, 668, 1408, 1562, 1580, 2040
SmoI CTYRAG 9 cut(s) 172, 364, 535, 580, 668, 1408, 1562, 1580, 2040
SnaBI TACGTA 1 cut(s) 1374
SphI GCATGC 2 cut(s) 1123, 1629
SseBI AGGCCT 1 cut(s) 1419
SsiI CCGC 7 cut(s) 113, 228, 244, 289, 333, 1490, 1941
SspMI CTAG 8 cut(s) 32, 71, 1082, 1469, 1473, 1608, 2052, 2102
SstI GAGCTC 1 cut(s) 768
StuI AGGCCT 1 cut(s) 1419
StyD4I CCNGG 5 cut(s) 1093, 1303, 1359, 1764, 2111
TaaI ACNGT 5 cut(s) 201, 532, 1013, 1996, 2164
TaiI ACGT 4 cut(s) 104, 1152, 1376, 1431
TaqII GACCGA 1 cut(s) 224
TatI WGTACW 2 cut(s) 430, 1534
TauI GCSGC 2 cut(s) 230, 1943
TfiI GAWTC 3 cut(s) 347, 914, 1901
Tru1I TTAA 8 cut(s) 18, 1409, 1509, 1563, 1581, 1854, 1892, 1917
Tru9I TTAA 8 cut(s) 18, 1409, 1509, 1563, 1581, 1854, 1892, 1917
TscAI CASTG 3 cut(s) 535, 1195, 1704
TseFI GTSAC 3 cut(s) 215, 677, 1111
TseI GCWGC 6 cut(s) 1487, 1649, 1934, 1937, 1943, 2031
Tsp45I GTSAC 3 cut(s) 215, 677, 1111
TspDTI ATGAA 8 cut(s) 250, 849, 1188, 1368, 1475, 1728, 1826, 2085
TspGWI ACGGA 4 cut(s) 372, 990, 1054, 2163
TspRI CASTG 3 cut(s) 535, 1195, 1704
Tth111I GACNNNGTC 1 cut(s) 103
Vha464I CTTAAG 3 cut(s) 1408, 1562, 1580
VpaK11BI GGWCC 3 cut(s) 330, 1519, 1640
XapI RAATTY 7 cut(s) 370, 419, 627, 1102, 1525, 1574, 2096
XbaI TCTAGA 1 cut(s) 2051
XceI RCATGY 6 cut(s) 431, 554, 758, 1123, 1629, 1748
XcmI CCANNNNNNNNNTGG 1 cut(s) 1772
XhoI CTCGAG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 1102
XspI CTAG 8 cut(s) 32, 71, 1082, 1469, 1473, 1608, 2052, 2102
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.