pycom02g13670

CTLH/CRA C-terminal to LisH motif domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
10255016 .. 10257656
2641 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g13670.3

Sequence Viewer

Length: 1230 bp
ATGAGATATTTTCCACACCCCAAGACGTCCACGTACAAGTCAGTAAAAAACCTAAATCACCACAGGGTGACAGTAACATTACTCGCACCTCTCTGTCCTCTAATTAACATACACGTGGCAAAACCTATAAAGAAAGACCTCGTGTCCTCCCTTCGATTCAGAGACTATTTTCCCCTCTGCGCCTCCACCTCGCTCTCCCTCTCTAGACATTTTCCTTCCAACCAAACAGTCCAAAATTTTCCCGGAAAATTCCAAAAAATGGACTCGACCTCAATTAACTGGGAAGCTCTAGACGCTCTCGTTATCGATTTCGCCAAATCGGAGAAGCTAGTCGAAGACGACGACTCCGCCTTTACGACGTCGCCTTCCCCTTCCTCTTCCTCTTCCCCCTCCTCTATCTCCTCCTCGTCGTACCACTCGAGATTGATCATTCGTCAGATCAGGCGGTCGCTGGAGGCGGGTCACATTGACGCCGCCATCGGTCTCCTCCGCTCCCACGCCCCTTTCATTCTCGACGATCACAGGCTCCTCTTCCGCTTGCAGAAACAGAGGTTTATTGAGCTGTTGAGGAGAGGGACCGCAGAGGATCGCGACTCTGCAATCAATTGCTTGAGGAATGCTCTTGCTCCGTGTGCCCTCGACGCTTATCCGGAAGCATATGAGGAATTCAAGCATGTTCTTCTTGCTTTTATATATGACAAAGAAGACCAATCTTCTCCTGTAGCAACTGAGTGGTCTGAAAGGAGGAGGTTTGACATTGCGGGATTAGTTTCCACTGTCTTGAGAGCCTATTTACATGCTTACGATCCGGTCTTCTCGATGACACTGAGATATTTAATAAGCATCCACAAGGGCTTTTGTTTTCGTCAAGGAATTTCGTCGCCTGTTTCAGATCTTACTCATAGGTTGCTTCTAGAGGAGCGTGATGCCCCTGCAGCACCCCAGGAGAGCCTGTTTGAAGCACCTCCTTTTGATGAGGTGGACATTCAAGCTCTGGCACATGCTGTAGAGCTCACAAGACAGGGAGCAGTAGATAGTTTAAGATTTGCCAAGGGTGATTTATTTCAGGCGTTTCAGAATGAGTTATGTAGAATGAGATTTGATGTTACCATGCTCGATGAGCTGGTTCGTGAGTATTGCGTTTACAGGGGCATTGTGGACTCTGGTTTTGCAACTTCTGATGTGTCTGGGGTGCAAAGCCTTTCCAAATCCTTGAAAGGATATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

410

Amino Acids

46.25

Weight (kDa)

6.92

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 29, 362
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 492
AccII CGCG 1 cut(s) 591
AccIII TCCGGA 1 cut(s) 649
AciI CCGC 8 cut(s) 348, 445, 458, 474, 490, 535, 579, 761
AclWI GGATC 2 cut(s) 594, 800
AcsI RAATTY 4 cut(s) 235, 248, 665, 873
AcvI CACGTG 1 cut(s) 115
AcyI GRCGYC 3 cut(s) 26, 359, 471
AdeI CACNNNGTG 1 cut(s) 67
AfaI GTAC 2 cut(s) 35, 413
AfiI CCNNNNNNNGG 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 670, 959, 989, 1216
AhdI GACNNNNNGTC 1 cut(s) 142
AjnI CCWGG 1 cut(s) 942
AluBI AGCT 6 cut(s) 287, 328, 562, 992, 1012, 1123
AluI AGCT 6 cut(s) 287, 328, 562, 992, 1012, 1123
Alw21I GWGCWC 1 cut(s) 1014
Alw26I GTCTC 2 cut(s) 156, 488
AlwI GGATC 2 cut(s) 594, 800
Ama87I CYCGRG 1 cut(s) 418
Aor13HI TCCGGA 1 cut(s) 649
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 4 cut(s) 235, 248, 665, 873
ArsI GACNNNNNNTTYG 2 cut(s) 1151, 1183
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 576
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 3 cut(s) 50, 79, 1067
AvaI CYCGRG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 576
BaeGI GKGCMC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 1014
BauI CACGAG 1 cut(s) 140
BbrPI CACGTG 1 cut(s) 115
BbsI GAAGAC 3 cut(s) 342, 711, 805
Bbv12I GWGCWC 1 cut(s) 1014
BbvI GCAGC 1 cut(s) 947
BccI CCATC 1 cut(s) 485
BciT130I CCWGG 1 cut(s) 944
BclI TGATCA 1 cut(s) 426
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 156, 488
BfaI CTAG 4 cut(s) 204, 290, 329, 914
BfmI CTRYAG 3 cut(s) 720, 933, 1005
BglII AGATCT 1 cut(s) 892
BisI GCNGC 2 cut(s) 474, 936
BlsI GCNGC 2 cut(s) 475, 937
Bme1390I CCNGG 2 cut(s) 243, 944
Bme18I GGWCC 1 cut(s) 576
BmeRI GACNNNNNGTC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 2 cut(s) 527, 577
BmrFI CCNGG 2 cut(s) 243, 944
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 2 cut(s) 852, 916
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 3 cut(s) 342, 711, 805
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpmI CTGGAG 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 631, 802
BpuMI CCSGG 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 306
BsaAI YACGTR 2 cut(s) 33, 115
BsaHI GRCGYC 3 cut(s) 26, 359, 471
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 942, 1050
BsaWI WCCGGW 2 cut(s) 649, 808
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 938, 968
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse1I ACTGG 1 cut(s) 284
Bse3DI GCAATG 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 649
BseBI CCWGG 1 cut(s) 944
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 942, 1050
BseGI GGATG 1 cut(s) 843
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 756
BseMII CTCAG 2 cut(s) 720, 818
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 8 cut(s) 382, 391, 394, 476, 518, 583, 760, 932
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 947
Bsh1236I CGCG 1 cut(s) 591
Bsh1285I CGRYCG 1 cut(s) 449
BshVI ATCGAT 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 1014
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 3 cut(s) 243, 650, 809
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 156, 488
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 622
Bso31I GGTCTC 1 cut(s) 488
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 637, 1014
Bsp13I TCCGGA 1 cut(s) 649
Bsp143I GATC 6 cut(s) 426, 438, 517, 586, 805, 892
Bsp68I TCGCGA 1 cut(s) 591
BspACI CCGC 8 cut(s) 348, 445, 458, 474, 490, 535, 579, 761
BspCNI CTCAG 2 cut(s) 721, 819
BspDI ATCGAT 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 649
BspFNI CGCG 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 527, 577
BspMAI CTGCAG 1 cut(s) 937
BspPI GGATC 2 cut(s) 594, 800
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 756
BsrI ACTGG 1 cut(s) 284
BssECI CCNNGG 2 cut(s) 942, 1050
BssMI GATC 6 cut(s) 426, 438, 517, 586, 805, 892
BssNI GRCGYC 3 cut(s) 26, 359, 471
BssSI CACGAG 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 1050
Bst2BI CACGAG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 944
Bst4CI ACNGT 3 cut(s) 73, 229, 778
Bst6I CTCTTC 3 cut(s) 382, 388, 536
BstACI GRCGYC 3 cut(s) 26, 359, 471
BstBAI YACGTR 2 cut(s) 33, 115
BstC8I GCNNGC 1 cut(s) 539
BstDEI CTNAG 2 cut(s) 729, 827
BstF5I GGATG 1 cut(s) 843
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 429, 441, 520, 589, 808, 895
BstMAI GTCTC 2 cut(s) 156, 488
BstMBI GATC 6 cut(s) 426, 438, 517, 586, 805, 892
BstMCI CGRYCG 1 cut(s) 449
BstMWI GCNNNNNNNGC 5 cut(s) 293, 632, 641, 935, 1120
BstNI CCWGG 1 cut(s) 944
BstNSI RCATGY 3 cut(s) 677, 800, 1004
BstSCI CCNGG 2 cut(s) 241, 942
BstSFI CTRYAG 3 cut(s) 720, 933, 1005
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 1 cut(s) 947
BstV2I GAAGAC 3 cut(s) 342, 711, 805
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 1 cut(s) 843
BtsIMutI CAGTG 2 cut(s) 774, 824
BtuMI TCGCGA 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 539
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 576
ClaI ATCGAT 1 cut(s) 306
CseI GACGC 3 cut(s) 302, 479, 650
Csp6I GTAC 2 cut(s) 34, 412
CviAII CATG 4 cut(s) 674, 797, 1001, 1111
CviQI GTAC 2 cut(s) 34, 412
DdeI CTNAG 2 cut(s) 729, 827
DpnI GATC 6 cut(s) 428, 440, 519, 588, 807, 894
DpnII GATC 6 cut(s) 426, 438, 517, 586, 805, 892
DraIII CACNNNGTG 1 cut(s) 67
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 3 cut(s) 382, 388, 536
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 3 cut(s) 382, 388, 536
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 1 cut(s) 1012
Eco130I CCWWGG 1 cut(s) 1050
Eco24I GRGCYC 1 cut(s) 1014
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 1012
Eco72I CACGTG 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 418
EcoICRI GAGCTC 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 942
EcoT14I CCWWGG 1 cut(s) 1050
EcoT38I GRGCYC 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 4 cut(s) 677, 800, 1004, 1114
FaqI GGGAC 1 cut(s) 589
FatI CATG 4 cut(s) 673, 796, 1000, 1110
FauI CCCGC 2 cut(s) 451, 754
FauNDI CATATG 1 cut(s) 658
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 474, 936
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 1 cut(s) 1014
Fsp4HI GCNGC 2 cut(s) 474, 936
FspBI CTAG 4 cut(s) 204, 290, 329, 914
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 474, 936
GsuI CTGGAG 1 cut(s) 473
HapII CCGG 3 cut(s) 243, 650, 809
HgaI GACGC 3 cut(s) 302, 479, 650
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 3 cut(s) 26, 359, 471
Hin1II CATG 4 cut(s) 677, 800, 1004, 1114
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 5 cut(s) 156, 263, 344, 593, 1160
HpaII CCGG 3 cut(s) 243, 650, 809
HphI GGTGA 3 cut(s) 50, 79, 1067
Hpy166II GTNNAC 4 cut(s) 30, 982, 1144, 1159
Hpy188I TCNGA 7 cut(s) 161, 322, 438, 739, 892, 1077, 1180
Hpy8I GTNNAC 4 cut(s) 30, 982, 1144, 1159
Hpy99I CGWCG 7 cut(s) 344, 361, 364, 412, 518, 644, 883
HpyAV CCTTC 4 cut(s) 161, 225, 375, 381
HpyCH4III ACNGT 3 cut(s) 73, 229, 778
HpyCH4IV ACGT 4 cut(s) 26, 32, 114, 359
HpyCH4V TGCA 5 cut(s) 541, 599, 935, 1172, 1195
HpyF10VI GCNNNNNNNGC 5 cut(s) 293, 632, 641, 935, 1120
HpyF3I CTNAG 2 cut(s) 729, 827
HpySE526I ACGT 4 cut(s) 26, 32, 114, 359
Hsp92I GRCGYC 3 cut(s) 26, 359, 471
Hsp92II CATG 4 cut(s) 677, 800, 1004, 1114
HspAI GCGC 1 cut(s) 180
Kpn2I TCCGGA 1 cut(s) 649
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 6 cut(s) 426, 438, 517, 586, 805, 892
LmnI GCTCC 5 cut(s) 497, 531, 631, 919, 1025
Lsp1109I GCAGC 1 cut(s) 947
LweI GCATC 2 cut(s) 852, 916
MaeI CTAG 4 cut(s) 204, 290, 329, 914
MaeII ACGT 4 cut(s) 26, 32, 114, 359
MaeIII GTNAC 4 cut(s) 67, 73, 461, 1105
MalI GATC 6 cut(s) 428, 440, 519, 588, 807, 894
MbiI CCGCTC 1 cut(s) 492
MboI GATC 6 cut(s) 426, 438, 517, 586, 805, 892
MboII GAAGA 8 cut(s) 347, 369, 375, 523, 671, 705, 716, 805
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 2 cut(s) 637, 1014
MluCI AATT 7 cut(s) 102, 235, 248, 273, 604, 665, 873
MlyI GAGTC 4 cut(s) 257, 338, 587, 1154
MmeI TCCRAC 1 cut(s) 243
MroI TCCGGA 1 cut(s) 649
MseI TTAA 4 cut(s) 105, 276, 836, 1040
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 3 cut(s) 243, 650, 809
MspR9I CCNGG 2 cut(s) 243, 944
MunI CAATTG 1 cut(s) 604
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 944
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 5 cut(s) 293, 632, 641, 935, 1120
NciI CCSGG 1 cut(s) 243
NdeI CATATG 1 cut(s) 658
NdeII GATC 6 cut(s) 426, 438, 517, 586, 805, 892
NlaIII CATG 4 cut(s) 677, 800, 1004, 1114
NlaIV GGNNCC 2 cut(s) 527, 577
NmuCI GTSAC 2 cut(s) 67, 461
NruI TCGCGA 1 cut(s) 591
NspI RCATGY 3 cut(s) 677, 800, 1004
PaeR7I CTCGAG 1 cut(s) 418
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 416
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 2 cut(s) 475, 937
PleI GAGTC 4 cut(s) 257, 338, 587, 1154
PmaCI CACGTG 1 cut(s) 115
PmlI CACGTG 1 cut(s) 115
PpsI GAGTC 4 cut(s) 257, 338, 587, 1154
Ppu21I YACGTR 2 cut(s) 33, 115
Psp124BI GAGCTC 1 cut(s) 1014
Psp6I CCWGG 1 cut(s) 942
PspCI CACGTG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 942
PspN4I GGNNCC 2 cut(s) 527, 577
PspPI GGNCC 1 cut(s) 576
PstI CTGCAG 1 cut(s) 937
PsuI RGATCY 1 cut(s) 892
RruI TCGCGA 1 cut(s) 591
RsaI GTAC 2 cut(s) 35, 413
RsaNI GTAC 2 cut(s) 34, 412
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 1014
SaqAI TTAA 4 cut(s) 105, 276, 836, 1040
SatI GCNGC 2 cut(s) 474, 936
Sau3AI GATC 6 cut(s) 426, 438, 517, 586, 805, 892
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 4 cut(s) 257, 338, 587, 1154
ScrFI CCNGG 2 cut(s) 243, 944
SduI GDGCHC 2 cut(s) 637, 1014
SfaNI GCATC 2 cut(s) 852, 916
SfcI CTRYAG 3 cut(s) 720, 933, 1005
Sfr274I CTCGAG 1 cut(s) 418
SinI GGWCC 1 cut(s) 576
SlaI CTCGAG 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 3 cut(s) 418, 610, 781
SmoI CTYRAG 3 cut(s) 418, 610, 781
Sse9I AATT 7 cut(s) 102, 235, 248, 273, 604, 665, 873
SsiI CCGC 8 cut(s) 348, 445, 458, 474, 490, 535, 579, 761
SspMI CTAG 4 cut(s) 204, 290, 329, 914
SstI GAGCTC 1 cut(s) 1014
StyD4I CCNGG 2 cut(s) 241, 942
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 3 cut(s) 73, 229, 778
TaiI ACGT 4 cut(s) 29, 35, 117, 362
TaqI TCGA 9 cut(s) 154, 266, 306, 333, 419, 513, 639, 818, 1116
TaqII GACCGA 1 cut(s) 470
TasI AATT 7 cut(s) 102, 235, 248, 273, 604, 665, 873
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 4 cut(s) 105, 276, 836, 1040
Tru9I TTAA 4 cut(s) 105, 276, 836, 1040
TscAI CASTG 2 cut(s) 781, 831
TseFI GTSAC 2 cut(s) 67, 461
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 2 cut(s) 67, 461
TspDTI ATGAA 1 cut(s) 496
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 781, 831
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 576
XapI RAATTY 4 cut(s) 235, 248, 665, 873
XbaI TCTAGA 3 cut(s) 203, 289, 913
XceI RCATGY 3 cut(s) 677, 800, 1004
XhoI CTCGAG 1 cut(s) 418
XspI CTAG 4 cut(s) 204, 290, 329, 914
ZraI GACGTC 2 cut(s) 27, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.