Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0008461

Physical Location & Seq

Genomic Coordinates Reverse (-)

18712876 .. 18715663

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g24520.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGACTCGACGCCAATTAACTGGGAAGCCCTAGACGCTCTCATCATCGATTTCGCCAAATCGGAGAAGCTAGTCGAAGACTCCTCCACTTTTACGACGTCGTCTTCCCCGCCCTCTTCCCCTCCGTCTTCCTCTTCCCCCTCCTCTATCTCCTCCTCGTCGTACCACTCGAGATTGATCATTCATCAGATCAGACGGTCGCTAGAGGCCGGTCACATTGACGCCGCCATCGGCCTCCTCCGCTCCCACGCCCCTTTCATTCTCGACGATCACAGGCTCCTCTTCCTCTTGCAGAAACAGAGGTTTATTGAGCTATTGAGGAGAGGGACCACAGAGGATCGTGACTCTGCAATCAATTGCTTGAGGAATGCTCTTGCTCCGTGTGCCCTCGACGCTTATCCGGAAGCTTATGGGGAATTCAAGCATGTACTGCTTGCTTTTATATATGACAAAGAAGACCAATCTTCTCCGGTAGCGACTGAGTGGTCTGAAAAGAGGAGGTTTGACATTGCCGGATTAGTTTCCACTGTCTTGAGAGCTTATTTACATGCTTATGATCCAGTCTTCTCGATGACCTTGAGATATTTGATAAGCATCCACAAAGGATTTTGTTTTCGTCAAGGAATTTCATCGCCTATTTCAGATCTTACACATAGATTACTTCTTGAGGAGCGTGACCCCCCTGCAACACCCCAGGAGAGCTTGTTTGAAGCACCTCCTTTTGATGAGGTGGACATACAAGCCCTTGCACATGCTGTAGAGCTCACGAGACAGGGAGCTGTAGATAGTTTGAGATTTGCTAAGGGTGATTTATTTCAGGCGTTTCAGAATGAATTATGCAGAATGAGATTTGATGTTGCCATGCTTGATGAGCTGGTTCGTGAGTATTGCGTTTACAGGGGCATTGTGGATTCTGGTTTTGCAACTTCTTCTGTGTCTGGGGTGCAAAGCCTTTCCAAATCTTTGAAAGTTGATCAACCGGTGATTGGGCATTCTCTGTCAAGAGACTGTTCTCATGAGGTCGATTATGGATCCAGCAAACATTCTGATGGTGAGATTTCTGTTAGTAATGATAATCTAGGTGGTTCCCCTGGAAAGAGTTCTGATGTGACGAGCATGCAAGGAATGGATATTGAAATGCGTTACGTTTGTGAGCCATCGAGCACTAATGAAGATTGTAGCACCAGTGGATCACATCAGCCTGATAAACTCAGAGTTTTACAAAGAAGACCCAGTGCACCTGCAGAAAGAAGTAAACGCAAGCGATGGAGGGGAAGACAAGATCGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH

Protein Analysis

431

Amino Acids

47.95

Weight (kDa)

5.8

Isoelectric Point (pI)

64.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008461)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66810 AT5G66810 AT5G66810 AT5G66810
fragaria_vesca	FvH4_1g15790 FvH4_1g15790 FvH4_1g15790
malus_domestica	MD00G1045200.v1.1 MD02G1169700.v1.1
prunus_persica	Prupe.7G135500_v2.0.a1 Prupe.7G135500_v2.0.a1
pyrus_communis	pycom02g13670 pycom15g24520
rosa_chinensis	RchiOBHm_Chr2g0105071
rosa_laevigata	RLG00000017400
rosa_multiflora	Rmu_sc0005160.1_g000010
rosa_roxburghii	Rroxscaffold_2G00138450
rosa_rugosa	Rorug02G0126100
rosa_samantha	Rh2AG176900 Rh2BG184900 Rh2CG181200 Rh2DG183000
rosa_wichuraiana	Rw2G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1249
AasI	GACNNNNNNGTC	1 cut(s)	484
AatII	GACGTC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	1249
AccBSI	CCGCTC	1 cut(s)	243
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	3 cut(s)	110, 225, 241
AclWI	GGATC	5 cut(s)	345, 551, 1026, 1039, 1198
AcsI	RAATTY	2 cut(s)	416, 624
AcyI	GRCGYC	3 cut(s)	11, 98, 222
AfaI	GTAC	2 cut(s)	164, 429
AfiI	CCNNNNNNNGG	1 cut(s)	986
AgeI	ACCGGT	1 cut(s)	979
AgsI	TTSAA	4 cut(s)	421, 710, 967, 1136
AjnI	CCWGG	2 cut(s)	693, 1090
AluBI	AGCT	8 cut(s)	70, 313, 407, 539, 702, 763, 779, 874
AluI	AGCT	8 cut(s)	70, 313, 407, 539, 702, 763, 779, 874
Alw21I	GWGCWC	3 cut(s)	765, 1166, 1240
Alw26I	GTCTC	2 cut(s)	763, 999
Alw44I	GTGCAC	1 cut(s)	1236
AlwI	GGATC	5 cut(s)	345, 551, 1026, 1039, 1198
Ama87I	CYCGRG	1 cut(s)	169
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	2 cut(s)	207, 232
ApaLI	GTGCAC	1 cut(s)	1236
ApoI	RAATTY	2 cut(s)	416, 624
AsiGI	ACCGGT	1 cut(s)	979
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	818, 994, 1064
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	388, 1240
BamHI	GGATCC	1 cut(s)	1031
BanII	GRGCYC	1 cut(s)	765
BauI	CACGAG	1 cut(s)	766
BbsI	GAAGAC	7 cut(s)	84, 96, 120, 462, 556, 1234, 1282
Bbv12I	GWGCWC	3 cut(s)	765, 1166, 1240
BccI	CCATC	4 cut(s)	236, 1043, 1165, 1260
BciT130I	CCWGG	2 cut(s)	695, 1092
BclI	TGATCA	2 cut(s)	177, 973
BcoDI	GTCTC	2 cut(s)	763, 999
BfaI	CTAG	4 cut(s)	32, 71, 203, 1079
BfmI	CTRYAG	3 cut(s)	756, 780, 1242
BfuAI	ACCTGC	1 cut(s)	1249
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	695, 1092
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	4 cut(s)	278, 328, 1033, 1087
BmrFI	CCNGG	2 cut(s)	695, 1092
BmrI	ACTGGG	2 cut(s)	31, 1227
BmsI	GCATC	1 cut(s)	603
BmuI	ACTGGG	2 cut(s)	31, 1227
BpiI	GAAGAC	7 cut(s)	84, 96, 120, 462, 556, 1234, 1282
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	4 cut(s)	382, 553, 598, 686
Bsa29I	ATCGAT	2 cut(s)	48, 1285
BsaBI	GATNNNNATC	1 cut(s)	593
BsaHI	GRCGYC	3 cut(s)	11, 98, 222
BsaJI	CCNNGG	2 cut(s)	693, 1090
BsaWI	WCCGGW	3 cut(s)	400, 469, 979
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse118I	RCCGGY	2 cut(s)	209, 979
Bse1I	ACTGG	4 cut(s)	26, 560, 1185, 1233
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	593
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	695, 1092
BseCI	ATCGAT	2 cut(s)	48, 1285
BseDI	CCNNGG	2 cut(s)	693, 1090
BseGI	GGATG	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	471, 1225
BseNI	ACTGG	4 cut(s)	26, 560, 1185, 1233
BseRI	GAGGAG	9 cut(s)	73, 133, 142, 145, 227, 269, 334, 511, 683
BseSI	GKGCMC	2 cut(s)	388, 1240
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	209, 234
BshTI	ACCGGT	1 cut(s)	979
BshVI	ATCGAT	2 cut(s)	48, 1285
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	3 cut(s)	765, 1166, 1240
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	5 cut(s)	210, 401, 470, 513, 980
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	986
BsmAI	GTCTC	2 cut(s)	763, 999
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	2 cut(s)	373, 991
BsnI	GGCC	2 cut(s)	209, 234
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	4 cut(s)	388, 765, 1166, 1240
Bsp13I	TCCGGA	1 cut(s)	400
BspACI	CCGC	3 cut(s)	110, 225, 241
BspANI	GGCC	2 cut(s)	209, 234
BspCNI	CTCAG	2 cut(s)	472, 1224
BspDI	ATCGAT	2 cut(s)	48, 1285
BspEI	TCCGGA	1 cut(s)	400
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	4 cut(s)	278, 328, 1033, 1087
BspMAI	CTGCAG	1 cut(s)	1246
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	5 cut(s)	345, 551, 1026, 1039, 1198
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	2 cut(s)	209, 979
BsrI	ACTGG	4 cut(s)	26, 560, 1185, 1233
BssAI	RCCGGY	2 cut(s)	209, 979
BssECI	CCNNGG	2 cut(s)	693, 1090
BssNI	GRCGYC	3 cut(s)	11, 98, 222
BssSI	CACGAG	1 cut(s)	766
Bst2BI	CACGAG	1 cut(s)	766
Bst2UI	CCWGG	2 cut(s)	695, 1092
Bst4CI	ACNGT	3 cut(s)	198, 529, 1010
Bst6I	CTCTTC	3 cut(s)	121, 139, 287
BstACI	GRCGYC	3 cut(s)	11, 98, 222
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	435, 1118, 1262
BstDEI	CTNAG	3 cut(s)	480, 801, 1211
BstF5I	GGATG	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	763, 999
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 240, 383, 392, 430, 871
BstNI	CCWGG	2 cut(s)	695, 1092
BstNSI	RCATGY	4 cut(s)	428, 551, 755, 1120
BstSCI	CCNGG	2 cut(s)	693, 1090
BstSFI	CTRYAG	3 cut(s)	756, 780, 1242
BstSLI	GKGCMC	2 cut(s)	388, 1240
BstV2I	GAAGAC	7 cut(s)	84, 96, 120, 462, 556, 1234, 1282
BstX2I	RGATCY	2 cut(s)	643, 1031
BstXI	CCANNNNNNTGG	1 cut(s)	21
BstYI	RGATCY	2 cut(s)	643, 1031
Bsu15I	ATCGAT	2 cut(s)	48, 1285
BsuRI	GGCC	2 cut(s)	209, 234
BsuTUI	ATCGAT	2 cut(s)	48, 1285
BtgZI	GCGATG	2 cut(s)	615, 1279
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	3 cut(s)	525, 1192, 1240
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	3 cut(s)	435, 1118, 1262
CciI	TCATGA	1 cut(s)	1015
Cfr10I	RCCGGY	2 cut(s)	209, 979
Cfr13I	GGNCC	1 cut(s)	327
ClaI	ATCGAT	2 cut(s)	48, 1285
CseI	GACGC	4 cut(s)	19, 44, 230, 401
Csp6I	GTAC	2 cut(s)	163, 428
CspAI	ACCGGT	1 cut(s)	979
CviAII	CATG	6 cut(s)	425, 548, 752, 862, 1016, 1117
CviQI	GTAC	2 cut(s)	163, 428
DdeI	CTNAG	3 cut(s)	480, 801, 1211
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	121, 139, 287
EarI	CTCTTC	3 cut(s)	121, 139, 287
Ecl136II	GAGCTC	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	763
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	763
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	693, 1090
EcoT38I	GRGCYC	1 cut(s)	765
FaeI	CATG	6 cut(s)	428, 551, 755, 865, 1019, 1120
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	424, 547, 751, 861, 1015, 1116
FauI	CCCGC	1 cut(s)	117
FbaI	TGATCA	2 cut(s)	177, 973
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	765
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	4 cut(s)	32, 71, 203, 1079
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	209, 234
HapII	CCGG	5 cut(s)	210, 401, 470, 513, 980
HgaI	GACGC	4 cut(s)	19, 44, 230, 401
Hin1I	GRCGYC	3 cut(s)	11, 98, 222
Hin1II	CATG	6 cut(s)	428, 551, 755, 865, 1019, 1120
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	4 cut(s)	5, 80, 344, 911
HpaII	CCGG	5 cut(s)	210, 401, 470, 513, 980
HphI	GGTGA	3 cut(s)	818, 994, 1064
Hpy166II	GTNNAC	4 cut(s)	733, 895, 1238, 1256
Hpy188I	TCNGA	9 cut(s)	64, 189, 194, 490, 643, 828, 1048, 1105, 1214
Hpy8I	GTNNAC	4 cut(s)	733, 895, 1238, 1256
Hpy99I	CGWCG	6 cut(s)	13, 100, 103, 163, 269, 395
HpyCH4III	ACNGT	3 cut(s)	198, 529, 1010
HpyCH4IV	ACGT	2 cut(s)	98, 1146
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 240, 383, 392, 430, 871
HpyF3I	CTNAG	3 cut(s)	480, 801, 1211
HpySE526I	ACGT	2 cut(s)	98, 1146
Hsp92I	GRCGYC	3 cut(s)	11, 98, 222
Hsp92II	CATG	6 cut(s)	428, 551, 755, 865, 1019, 1120
Kpn2I	TCCGGA	1 cut(s)	400
Ksp22I	TGATCA	2 cut(s)	177, 973
LmnI	GCTCC	5 cut(s)	248, 282, 382, 670, 776
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	4 cut(s)	32, 71, 203, 1079
MaeII	ACGT	2 cut(s)	98, 1146
MaeIII	GTNAC	5 cut(s)	212, 341, 674, 1108, 1142
MbiI	CCGCTC	1 cut(s)	243
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	2 cut(s)	643, 1031
MhlI	GDGCHC	4 cut(s)	388, 765, 1166, 1240
MluCI	AATT	5 cut(s)	15, 355, 416, 624, 833
MlyI	GAGTC	2 cut(s)	74, 338
MroI	TCCGGA	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	1099
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	2 cut(s)	552, 1047
MspI	CCGG	5 cut(s)	210, 401, 470, 513, 980
MspR9I	CCNGG	2 cut(s)	695, 1092
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	2 cut(s)	373, 991
MvaI	CCWGG	2 cut(s)	695, 1092
MwoI	GCNNNNNNNGC	6 cut(s)	35, 240, 383, 392, 430, 871
NlaIII	CATG	6 cut(s)	428, 551, 755, 865, 1019, 1120
NlaIV	GGNNCC	4 cut(s)	278, 328, 1033, 1087
NmuCI	GTSAC	4 cut(s)	212, 341, 674, 1108
NspI	RCATGY	4 cut(s)	428, 551, 755, 1120
PaeI	GCATGC	1 cut(s)	1120
PaeR7I	CTCGAG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	1015
PaqCI	CACCTGC	1 cut(s)	1249
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	2 cut(s)	373, 991
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	1 cut(s)	911
PflFI	GACNNNGTC	1 cut(s)	100
PinAI	ACCGGT	1 cut(s)	979
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	74, 338
PpsI	GAGTC	2 cut(s)	74, 338
Psp124BI	GAGCTC	1 cut(s)	765
Psp6I	CCWGG	2 cut(s)	693, 1090
PspGI	CCWGG	2 cut(s)	693, 1090
PspN4I	GGNNCC	4 cut(s)	278, 328, 1033, 1087
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	1246
PsuI	RGATCY	2 cut(s)	643, 1031
PsyI	GACNNNGTC	1 cut(s)	100
RsaI	GTAC	2 cut(s)	164, 429
RsaNI	GTAC	2 cut(s)	163, 428
RseI	CAYNNNNRTG	2 cut(s)	552, 1047
SacI	GAGCTC	1 cut(s)	765
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	2 cut(s)	74, 338
ScrFI	CCNGG	2 cut(s)	695, 1092
SduI	GDGCHC	4 cut(s)	388, 765, 1166, 1240
SfaNI	GCATC	1 cut(s)	603
SfcI	CTRYAG	3 cut(s)	756, 780, 1242
Sfr274I	CTCGAG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	552, 1047
SmlI	CTYRAG	5 cut(s)	169, 361, 532, 577, 665
SmoI	CTYRAG	5 cut(s)	169, 361, 532, 577, 665
SphI	GCATGC	1 cut(s)	1120
Sse9I	AATT	5 cut(s)	15, 355, 416, 624, 833
SsiI	CCGC	3 cut(s)	110, 225, 241
SspMI	CTAG	4 cut(s)	32, 71, 203, 1079
SstI	GAGCTC	1 cut(s)	765
StyD4I	CCNGG	2 cut(s)	693, 1090
TaaI	ACNGT	3 cut(s)	198, 529, 1010
TaiI	ACGT	2 cut(s)	101, 1149
TasI	AATT	5 cut(s)	15, 355, 416, 624, 833
TatI	WGTACW	1 cut(s)	427
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	3 cut(s)	532, 1192, 1240
TseFI	GTSAC	4 cut(s)	212, 341, 674, 1108
Tsp45I	GTSAC	4 cut(s)	212, 341, 674, 1108
TspDTI	ATGAA	5 cut(s)	173, 247, 618, 846, 1185
TspGWI	ACGGA	2 cut(s)	114, 369
TspRI	CASTG	3 cut(s)	532, 1192, 1240
Tth111I	GACNNNGTC	1 cut(s)	100
VneI	GTGCAC	1 cut(s)	1236
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	2 cut(s)	416, 624
XceI	RCATGY	4 cut(s)	428, 551, 755, 1120
XhoI	CTCGAG	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	4 cut(s)	32, 71, 203, 1079
ZraI	GACGTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.